Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000085

Physical Location & Seq

Genomic Coordinates Forward (+)

80569943 .. 80573218

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG569900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTCAAGTTGAGGAGCGATGGGTGCGGTTAGTCCGCGCAGTATTAAGGAGGGAAAGGATGGGGCCTGATGCATACGAGCAGCATGGGATTGGTATTGCCGGAAATGTTCCATCTTCACTTGAAAATAATAGGGATATTGATGAAATTCTTAGAGTTGCAGATGAAATCCAAGATGAAGATCCCAATATCTCTAGAATCCAATGTGAACATGGTTATTCGCTGGCTCAAAATCTAGACCCCAATAGTGAAGGAAGTGGAGTTTTACAGTTTGAGACCGGATTGATGTCTGTCATTAAGAAAGTAATATTCATTCGTAAAAAGTACAAGAAGGGGAGAACTGACCTGGTTGGGACTCACCAATTGACTCATAAGAAGCCTCAGTCGGCTTACAACGACTTTGGAGATGACCTTCCAAGCCCAATAGGTTTTTTTATGTGGAAAGCCCCCACTCGCTATCTTATTGCAGACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

158

Amino Acids

17.98

Weight (kDa)

5.82

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica	MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica	Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis	pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis	RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata	RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora	Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa	Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha	Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana	Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	28, 37
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	15, 55, 121
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	195, 236
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	102, 279
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	28, 37
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	269
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	152, 381
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	86, 212
CviJI	RGCY	7 cut(s)	5, 67, 227, 379, 389, 420, 446
CviKI_1	RGCY	7 cut(s)	5, 67, 227, 379, 389, 420, 446
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	152, 381
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	76
FaeI	CATG	2 cut(s)	89, 215
FaiI	YATR	5 cut(s)	76, 87, 213, 372, 437
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	85, 211
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	195, 236
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	102, 279
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	89, 215
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	198, 355, 367
HpaII	CCGG	2 cut(s)	102, 279
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	195, 236
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	245, 325, 422
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	74, 161, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	152, 381
Hsp92II	CATG	2 cut(s)	89, 215
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	81, 115, 209, 292, 332, 359
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	345
MaeI	CTAG	2 cut(s)	195, 236
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	108, 191
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	2 cut(s)	147, 362
MlyI	GAGTC	2 cut(s)	349, 361
MnlI	CCTC	3 cut(s)	7, 45, 390
Mph1103I	ATGCAT	1 cut(s)	76
MseI	TTAA	2 cut(s)	47, 297
MspI	CCGG	2 cut(s)	102, 279
MspR9I	CCNGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	89, 215
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	2 cut(s)	349, 361
PpsI	GAGTC	2 cut(s)	349, 361
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	47, 297
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	2 cut(s)	349, 361
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	3 cut(s)	348, 414, 430
SexAI	ACCWGGT	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	147, 362
SsiI	CCGC	2 cut(s)	28, 37
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	195, 236
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	270
TasI	AATT	2 cut(s)	147, 362
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	47, 297
Tru9I	TTAA	2 cut(s)	47, 297
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	159, 180, 192, 301
XapI	RAATTY	1 cut(s)	147
XbaI	TCTAGA	2 cut(s)	194, 235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	195, 236
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.