RchiOBHm_Chr6g0256601

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000085
Physical Location & Seq
Forward (+)
11852427 .. 11854447
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23020

Sequence Viewer

Length: 1962 bp
ATGGGGGAGATTGTTGTGGGAATTCTAGGTCCAGTAATGCAACTTGGTCAGTGGGTGTGGACTCCTGTGAAGCGTGGGATGAGTTACATGGTTCATTACAAGAAAAAATTACAGTCTCTTGACCTTCAATTTTCTGACCTTGAGGTGAAGTGGAATGATCATAATGAATCTGTGGCTAGTGCTCGAACGGGTGGACACCAAATCAAGCGTGAGGTTGAAGCATGGCTAACAAAAGCTGAAAATGCCATGGGAGATGCGAGAGAATTGAAAGATGAAGCTGAAGCAGGTGAAAAGTGCTTTATAGGATGGTGTCCGGATTTGAAATGGCGTTACAATTTGGGGAAGAGAGCATGGAATCTGACAACAACACTAAAGAACCTGGTGGAAGAGGCAGAATTTGAGACTGTTTCACTTGAAGTTCGACAACCACTTGAAGTTCAGCGCTTGATCTCCACTGAAGGATTTGAACCATTTGAAGCAACTAGACAAGGCATGTATGAAGTCATGAACGCGCTGGAGAAAGATGAGATCACAGCCATTGGTGTCTATGGAATGGGTGGCATAGGGAAAACAACTGTGGTGAAACAGGTTGCTAGACAAGTGTGTAATGGACTCTTTAATCGTATGATTATGGCTGTTGTCTCTCAGAACCCCGTGGTGATGCAAATTCAAGACCAACTTAAAGATATGCTGGCCTTGAATTTGCATGAAACAACAGAAATGACAAGAGCAGCTAGACTGAAGAAGACGATAATAGAAGCGGGAAAGAAGATCCTCATAATCTTGGACGATATTTGGGACACAAAGGTTTTGTCTGACGTAGGATTGGTAGGAATTCCTAGCCACGACGAGCTTAGAAGATGCGGTTCCAAAGTCATCCTTACCACAAGAAGAAGCCAGATTTGTCATGCCATGGGGTGTCAAGTGGTGATCCGTCTCAACATATTATCAGAAGATGATTCTTGGAAGTTGTTTGTGAAGACTGCTAGAAATGAGTCTCTTGAGTCAACCGATTTCTGTGAGGTAGCAAAGCAAGTAGCTAATGAGTGTGGTGGCCTCCCAGTTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAATACCAGTTGAAAGAATGGCAAGAAGCAGCACGACGACTAAAGAATTCCCAACCTGCAAGTGATGATGATGACGGACGTGTGCTCGAATGTATGAGGTTAAGTTATGATTTCTTGAACAGCGAGGATGCAAAATCATGCTTCTTGCTTTGTTGCCTCTTTCCAGAAGACTATGATATCCCAGAAAATGACTTGATCAAGTATGGACTGGGGAAAGGGTTGTTTCGGGCGGACACATTTGAAGATGCCAGAAGCAGAGCGCATTCGGTGATCAACTACCTTAAAGCTTCCAACTTGCTTTTGGACGGTGAAAGGGATGAATTCGTAAGGATGCATGATGTCATTCGGGATATGGCCATGTTAATAGCATCATCTGAATATGATGGTGGATTTTTGGTCAAAGCTCGAACTGAAATGACGGTTTGGCCAAGTAATGCAGATGAACGCCACTCTGCAATCTCTTTAATGAAGAACTATATTGGGAAGCTTCCTGAAGAGTTGGTATGTCCAAAACTCCAGATTTTATTACTGCAAGATAATGAATATATAAAGGAGATCCCAGAAACATTTTTTGAAAGTTTGAATGAGTTAAAGGTCTTAGATCTCAGTCGCACTGGTATTTCGATCGTACCAGAGTCTTTGAGTCTGCGGACCAACCTCCAAGCATTATATCTAGATGATTGCCAGTCAATAAGGTATGTATCTCTACTGGGAAAACTGAAGAAACTTGAAATTCTTAGCCTGAGAGGTTCAGCCCTTGAGGAATTACCTGAAGGGATAGGAAATTTGGCTAGGCTAAAAATGCTTGATCTTAGTGGGTGTCGGCGCATTAAGAGAATTCCATCCAATTTGATGTCAAGTTGA

Protein Analysis

653

Amino Acids

73.77

Weight (kDa)

5.54

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 165 - 333 1.8e-31 NB-ARC domain
LRR_8 PF13855 536 - 595 4.3e-09 Leucine rich repeat
LRR_14 PF23598 587 - 650 7e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 2 cut(s) 275, 1162
AccII CGCG 1 cut(s) 512
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 4 cut(s) 761, 864, 1328, 1747
AclWI GGATC 3 cut(s) 766, 925, 1648
AcoI YGGCCR 2 cut(s) 1452, 1523
AcuI CTGAAG 6 cut(s) 300, 477, 761, 1611, 1838, 1890
AfaI GTAC 1 cut(s) 1728
AfeI AGCGCT 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 1177
AjiI CACGTC 1 cut(s) 1178
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 8 cut(s) 236, 278, 734, 853, 1040, 1385, 1502, 1585
AluI AGCT 8 cut(s) 236, 278, 734, 853, 1040, 1385, 1502, 1585
Alw21I GWGCWC 2 cut(s) 184, 1185
Alw26I GTCTC 5 cut(s) 120, 395, 646, 941, 1002
AlwI GGATC 3 cut(s) 766, 925, 1648
Aor13HI TCCGGA 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 443
AoxI GGCC 4 cut(s) 693, 1054, 1452, 1523
ApeKI GCWGC 2 cut(s) 731, 1127
ArsI GACNNNNNNTTYG 2 cut(s) 797, 829
AspLEI GCGC 4 cut(s) 444, 514, 1360, 1926
AspS9I GGNCC 2 cut(s) 29, 1749
AsuHPI GGTGA 7 cut(s) 157, 299, 592, 670, 940, 1378, 1418
AvaII GGWCC 2 cut(s) 29, 1749
BaeGI GKGCMC 1 cut(s) 1090
BalI TGGCCA 2 cut(s) 1454, 1525
BbsI GAAGAC 3 cut(s) 752, 986, 1272
Bbv12I GWGCWC 2 cut(s) 184, 1185
BbvI GCAGC 2 cut(s) 743, 1139
BccI CCATC 3 cut(s) 300, 1475, 1948
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 3 cut(s) 157, 1293, 1368
BcoDI GTCTC 5 cut(s) 120, 395, 646, 941, 1002
BfaI CTAG 9 cut(s) 26, 177, 483, 594, 735, 840, 987, 1772, 1890
BfoI RGCGCY 1 cut(s) 445
BfuAI ACCTGC 2 cut(s) 275, 1162
BglII AGATCT 1 cut(s) 1699
BisI GCNGC 2 cut(s) 732, 1128
BlsI GCNGC 2 cut(s) 733, 1129
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 2 cut(s) 29, 1749
BmgBI CACGTC 1 cut(s) 1178
BmgT120I GGNCC 2 cut(s) 29, 1749
BmiI GGNNCC 1 cut(s) 868
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 3 cut(s) 1055, 1316, 1817
BmsI GCATC 7 cut(s) 244, 651, 851, 1216, 1333, 1419, 1475
BmuI ACTGGG 3 cut(s) 1055, 1316, 1817
BpiI GAAGAC 3 cut(s) 752, 986, 1272
BpmI CTGGAG 2 cut(s) 536, 1598
BpuEI CTTGAG 3 cut(s) 161, 1022, 1877
BsaJI CCNNGG 3 cut(s) 246, 654, 912
BsaWI WCCGGW 1 cut(s) 313
Bse1I ACTGG 7 cut(s) 32, 1061, 1105, 1311, 1717, 1783, 1812
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 246, 654, 912
BseGI GGATG 7 cut(s) 84, 311, 876, 1231, 1420, 1434, 1940
BseMII CTCAG 3 cut(s) 659, 1717, 1832
BseNI ACTGG 7 cut(s) 32, 1061, 1105, 1311, 1717, 1783, 1812
BseSI GKGCMC 1 cut(s) 1090
BseXI GCAGC 2 cut(s) 743, 1139
Bsh1236I CGCG 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 1725
BshFI GGCC 4 cut(s) 695, 1056, 1454, 1525
BsiEI CGRYCG 1 cut(s) 1725
BsiHKAI GWGCWC 2 cut(s) 184, 1185
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 812
BsmAI GTCTC 5 cut(s) 120, 395, 646, 941, 1002
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 1 cut(s) 812
BsmI GAATGC 1 cut(s) 1360
BsnI GGCC 4 cut(s) 695, 1056, 1454, 1525
Bsp1286I GDGCHC 3 cut(s) 184, 1090, 1185
Bsp13I TCCGGA 1 cut(s) 313
Bsp19I CCATGG 2 cut(s) 246, 912
BspACI CCGC 4 cut(s) 761, 864, 1328, 1747
BspANI GGCC 4 cut(s) 695, 1056, 1454, 1525
BspCNI CTCAG 3 cut(s) 658, 1716, 1833
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 1 cut(s) 512
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 868
BspMI ACCTGC 2 cut(s) 275, 1162
BspPI GGATC 3 cut(s) 766, 925, 1648
BsrI ACTGG 7 cut(s) 32, 1061, 1105, 1311, 1717, 1783, 1812
BssECI CCNNGG 3 cut(s) 246, 654, 912
BssT1I CCWWGG 2 cut(s) 246, 912
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 5 cut(s) 114, 406, 577, 1406, 1519
Bst6I CTCTTC 3 cut(s) 338, 381, 1587
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 7 cut(s) 645, 854, 1696, 1703, 1835, 1841, 1910
BstDSI CCRYGG 3 cut(s) 246, 654, 912
BstF5I GGATG 7 cut(s) 84, 311, 876, 1231, 1420, 1434, 1940
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 4 cut(s) 444, 514, 1360, 1926
BstMAI GTCTC 5 cut(s) 120, 395, 646, 941, 1002
BstMCI CGRYCG 1 cut(s) 1725
BstMWI GCNNNNNNNGC 3 cut(s) 242, 1073, 1900
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 1090
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 743, 1139
BstV2I GAAGAC 3 cut(s) 752, 986, 1272
BstX2I RGATCY 3 cut(s) 771, 1653, 1699
BstYI RGATCY 3 cut(s) 771, 1653, 1699
BsuRI GGCC 4 cut(s) 695, 1056, 1454, 1525
BtgI CCRYGG 3 cut(s) 246, 654, 912
BtrI CACGTC 1 cut(s) 1178
BtsCI GGATG 7 cut(s) 84, 311, 876, 1231, 1420, 1434, 1940
BtsIMutI CAGTG 3 cut(s) 56, 453, 1710
BveI ACCTGC 2 cut(s) 275, 1162
Cac8I GCNNGC 1 cut(s) 693
CciI TCATGA 1 cut(s) 504
CfoI GCGC 4 cut(s) 444, 514, 1360, 1926
Cfr13I GGNCC 2 cut(s) 29, 1749
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 1727
CviQI GTAC 1 cut(s) 1727
DdeI CTNAG 7 cut(s) 645, 854, 1696, 1703, 1835, 1841, 1910
EaeI YGGCCR 2 cut(s) 1452, 1523
Eam1104I CTCTTC 3 cut(s) 338, 381, 1587
EarI CTCTTC 3 cut(s) 338, 381, 1587
EciI GGCGGA 1 cut(s) 1343
Eco130I CCWWGG 2 cut(s) 246, 912
Eco32I GATATC 1 cut(s) 1276
Eco47I GGWCC 2 cut(s) 29, 1749
Eco47III AGCGCT 1 cut(s) 443
Eco57I CTGAAG 6 cut(s) 300, 477, 761, 1611, 1838, 1890
EcoRI GAATTC 5 cut(s) 21, 834, 1144, 1418, 1935
EcoRII CCWGG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 1276
EcoT14I CCWWGG 2 cut(s) 246, 912
EcoT22I ATGCAT 1 cut(s) 1434
ErhI CCWWGG 2 cut(s) 246, 912
Esp3I CGTCTC 1 cut(s) 941
FalI AAGNNNNNCTT 4 cut(s) 663, 695, 864, 896
FaqI GGGAC 1 cut(s) 812
FauI CCCGC 1 cut(s) 754
FbaI TGATCA 3 cut(s) 157, 1293, 1368
Fnu4HI GCNGC 2 cut(s) 732, 1128
FokI GGATG 7 cut(s) 91, 318, 863, 1238, 1427, 1441, 1927
Fsp4HI GCNGC 2 cut(s) 732, 1128
FspBI CTAG 9 cut(s) 26, 177, 483, 594, 735, 840, 987, 1772, 1890
GlaI GCGC 4 cut(s) 443, 513, 1359, 1925
GluI GCNGC 2 cut(s) 732, 1128
GsuI CTGGAG 2 cut(s) 536, 1598
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 4 cut(s) 695, 1056, 1454, 1525
HapII CCGG 1 cut(s) 314
HhaI GCGC 4 cut(s) 444, 514, 1360, 1926
Hin6I GCGC 4 cut(s) 442, 512, 1358, 1924
HinP1I GCGC 4 cut(s) 442, 512, 1358, 1924
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 2 cut(s) 1383, 1583
HinfI GANTC 9 cut(s) 61, 167, 355, 612, 959, 995, 1004, 1733, 1741
HpaII CCGG 1 cut(s) 314
HphI GGTGA 7 cut(s) 157, 299, 592, 670, 940, 1378, 1418
Hpy166II GTNNAC 3 cut(s) 60, 194, 1008
Hpy188I TCNGA 6 cut(s) 136, 360, 648, 817, 952, 1474
Hpy8I GTNNAC 3 cut(s) 60, 194, 1008
Hpy99I CGWCG 2 cut(s) 851, 1137
HpyAV CCTTC 3 cut(s) 134, 452, 1865
HpyCH4III ACNGT 5 cut(s) 114, 406, 577, 1406, 1519
HpyCH4IV ACGT 2 cut(s) 819, 1177
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 1073, 1900
HpyF3I CTNAG 7 cut(s) 645, 854, 1696, 1703, 1835, 1841, 1910
HpySE526I ACGT 2 cut(s) 819, 1177
HspAI GCGC 4 cut(s) 442, 512, 1358, 1924
Kpn2I TCCGGA 1 cut(s) 313
Ksp22I TGATCA 3 cut(s) 157, 1293, 1368
Lsp1109I GCAGC 2 cut(s) 743, 1139
LweI GCATC 7 cut(s) 244, 651, 851, 1216, 1333, 1419, 1475
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 9 cut(s) 26, 177, 483, 594, 735, 840, 987, 1772, 1890
MaeII ACGT 2 cut(s) 819, 1177
MaeIII GTNAC 2 cut(s) 83, 329
MflI RGATCY 3 cut(s) 771, 1653, 1699
MhlI GDGCHC 3 cut(s) 184, 1090, 1185
MlsI TGGCCA 2 cut(s) 1454, 1525
MluNI TGGCCA 2 cut(s) 1454, 1525
MlyI GAGTC 6 cut(s) 55, 606, 1004, 1013, 1742, 1750
MmeI TCCRAC 1 cut(s) 1413
Mox20I TGGCCA 2 cut(s) 1454, 1525
Mph1103I ATGCAT 1 cut(s) 1434
MroI TCCGGA 1 cut(s) 313
MscI TGGCCA 2 cut(s) 1454, 1525
MseI TTAA 8 cut(s) 618, 681, 1199, 1380, 1460, 1562, 1688, 1929
Msp20I TGGCCA 2 cut(s) 1454, 1525
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 1360
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 242, 1073, 1900
NcoI CCATGG 2 cut(s) 246, 912
NlaIV GGNNCC 1 cut(s) 868
NsiI ATGCAT 1 cut(s) 1434
NspI RCATGY 1 cut(s) 496
PagI TCATGA 1 cut(s) 504
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 1360
PfeI GAWTC 3 cut(s) 167, 355, 959
PkrI GCNGC 2 cut(s) 733, 1129
Ple19I CGATCG 1 cut(s) 1725
PleI GAGTC 6 cut(s) 55, 606, 1003, 1012, 1741, 1749
PpsI GAGTC 6 cut(s) 55, 606, 1003, 1012, 1741, 1749
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 868
PspPI GGNCC 2 cut(s) 29, 1749
PsuI RGATCY 3 cut(s) 771, 1653, 1699
PvuI CGATCG 1 cut(s) 1725
RsaI GTAC 1 cut(s) 1728
RsaNI GTAC 1 cut(s) 1727
SaqAI TTAA 8 cut(s) 618, 681, 1199, 1380, 1460, 1562, 1688, 1929
SatI GCNGC 2 cut(s) 732, 1128
Sau96I GGNCC 2 cut(s) 29, 1749
SchI GAGTC 6 cut(s) 55, 606, 1004, 1013, 1742, 1750
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 3 cut(s) 184, 1090, 1185
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 7 cut(s) 244, 651, 851, 1216, 1333, 1419, 1475
SinI GGWCC 2 cut(s) 29, 1749
SmlI CTYRAG 3 cut(s) 140, 1001, 1856
SmoI CTYRAG 3 cut(s) 140, 1001, 1856
SsiI CCGC 4 cut(s) 761, 864, 1328, 1747
SspMI CTAG 9 cut(s) 26, 177, 483, 594, 735, 840, 987, 1772, 1890
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 246, 912
TaaI ACNGT 5 cut(s) 114, 406, 577, 1406, 1519
TaiI ACGT 2 cut(s) 822, 1180
TaqI TCGA 5 cut(s) 184, 421, 1185, 1504, 1721
TfiI GAWTC 3 cut(s) 167, 355, 959
Tru1I TTAA 8 cut(s) 618, 681, 1199, 1380, 1460, 1562, 1688, 1929
Tru9I TTAA 8 cut(s) 618, 681, 1199, 1380, 1460, 1562, 1688, 1929
TscAI CASTG 3 cut(s) 56, 460, 1717
TseI GCWGC 2 cut(s) 731, 1127
TspGWI ACGGA 2 cut(s) 923, 1188
TspRI CASTG 3 cut(s) 56, 460, 1717
VpaK11BI GGWCC 2 cut(s) 29, 1749
XbaI TCTAGA 1 cut(s) 1771
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 1396
XspI CTAG 9 cut(s) 26, 177, 483, 594, 735, 840, 987, 1772, 1890
Zsp2I ATGCAT 1 cut(s) 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.