Rmu_sc0003547.1_g000006

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003547.1
OG0000085
Physical Location & Seq
Forward (+)
26989 .. 30128
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003547.1_g000006.1.cds

Sequence Viewer

Length: 2517 bp
atggagtgccaagcaagaattcatctcgataccttatcagaagaagattcttggaacctttttgtgaagaaatcgggaaagtcttttcatacatctatccggctgtatggtccagcaaggatgttagctagagaatgtggtggtttcccacttgtactgataacagttgctcgggcacttggagataaacacatagacgactggaaagaagcagctcgacgagtacgcacatcccaactagccagtcctgaggatgggggagatccattcggatttataaagttgagctatgattacttgaggtctgatgatgccagatcattcttcttgcttagctgcctattcccagaagactatgacatcccaatcgaagacttgctcaagtatgcaatcgggaaaggattgcttcaagatgtcaaaacaatccaagaagccagagctacagcaaattcggtgatcaagtccctcggaacttccggcttacttttggactgtacaaaggaaggatgtgtaaggatgcatgatgtagtgcgggatgtagccgtgttgattttgttgtctgaagatggtcatagatctttggtaaaatcgggttgtgcattacggcattggccaaggattggtctgcagagaggctactctgcaatctcactaatgatgaatgatattgacaggcttcctgaagatttggtatgctcagaactccagattttgttactacaaaaaaatgctggtatatatgagatcccagaaaccttttttcaaagttcgaatgcgctaagggtcttagatattaactttactaatatttcgtcaccacccgggtcaattaatatcctaaccaatctccaagctttgtttttagattattgcaataagttaattgacatatccatattcagaaacttgaagaaactcaagattcttagtatgaaggggtttcctcttcaggagttaccaaaagagataggatacttgaccaatctaaggatgctggacttaagtgggagttacactcttggtatatttccatataatgtcatgtcaagattgtgtaacttagaagaactgtacatgcaatgtaattctgcgggctggggaagcaaaattcatggaggtggagaagaaactaatgttgatcctgatgagttgattggcttgacacatttaaacattgtgaagcttcacatatctgatgcagaatgcttgcctaaaactgttatacgcagtttgagttgggtaaacttcgacatatgtatcagcactgaatcaccatctagagactactcttcaacaccatttttttcagatgatcattcaagaaccctgactcttggcacaacaatcaagagcttaccagattggtttatcaacacggtgacagagaaggcaggaaaactacagtacctaaagtgcgagggcctaaagaacattcttgtggaatatgacagaggaaggttacatggattgaagtatctagctataattgggccgcatgagaacttggaggtgttgatggaaacaataacatgggatccgaataaacctgtgttcgagaacttggaagagttgcatctccttggcgtggaatactgtcacgacttggtgagtgcactgttgccatcaaatttgttgaagagtatacaaaatctggaaaaacttcactttgaagatgtgaatggaatggagtatgtgtttggatctgaagggttggagccagaagatattatcttgacaaaattgagagagatgatattgtgggatgtagagaaactgataaccatatggaatggtccagctccaaatgcagtattctgtaaccttaaaagtatggcagtgtccgggtgcaagaaattgaaaagtcttttcaattacgatgtagctgaatgtctttttcatttggaagacctttcagtgactcaatgtcctagcttggacagggttattgaaccaaacaaggaagcagtgaacaagaagatagtgtttccagaactgaagatcttggctttgtcatatcttccacatctcacaaggttctgcagtactgaaagtgctactattgagtgccctttattggagcacttgcatgtgcaggactgcccgcattttgcaacctctatttctgacttccacagctggaagcaattacaagttattgatctacgacatttgagaatgagcaaagacatggtcaacatcaattcagctggccagcacaccgtggacatccttgagagcctaccccagaatttcaaaacgcgggctgaggttattagagaaattcagcgtcaatatgatgagttacagaccaaaaagagatacatgattgtaaatggtgttgttgaagctgatggagttactactgaagcagcagcaaatcaagaggacaaagctgcaaaaaagagaggagtgtgtgatttctccctcaatgcactaaagaatgatgacgtgctggccaatgagatcactaatcatgatgaaggagctcttaaatatctcagacataaattggtgtag

Protein Analysis

838

Amino Acids

94.63

Weight (kDa)

5.6

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 620
AccI GTMKAC 1 cut(s) 1642
AccII CGCG 1 cut(s) 2260
AciI CCGC 5 cut(s) 532, 1091, 1493, 2102, 2260
AclWI GGATC 6 cut(s) 257, 739, 1133, 1529, 1542, 1708
AcoI YGGCCR 3 cut(s) 611, 2209, 2454
AcsI RAATTY 6 cut(s) 18, 448, 1107, 1627, 2248, 2280
AcuI CTGAAG 6 cut(s) 582, 702, 932, 1725, 2015, 2385
AdeI CACNNNGTG 1 cut(s) 2221
AfaI GTAC 6 cut(s) 156, 225, 496, 1073, 1406, 2044
AfiI CCNNNNNNNGG 5 cut(s) 254, 620, 987, 1585, 2074
AflII CTTAAG 1 cut(s) 1000
AhdI GACNNNNNGTC 1 cut(s) 1923
AjiI CACGTC 1 cut(s) 2449
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw21I GWGCWC 3 cut(s) 1615, 2082, 2488
Alw26I GTCTC 1 cut(s) 1275
Alw44I GTGCAC 1 cut(s) 1611
AlwI GGATC 6 cut(s) 257, 739, 1133, 1529, 1542, 1708
Ama87I CYCGRG 2 cut(s) 171, 821
AoxI GGCC 5 cut(s) 611, 1420, 1490, 2209, 2454
ApaLI GTGCAC 1 cut(s) 1611
ApeKI GCWGC 5 cut(s) 212, 336, 2369, 2372, 2393
ApoI RAATTY 6 cut(s) 18, 448, 1107, 1627, 2248, 2280
ArsI GACNNNNNNTTYG 2 cut(s) 2175, 2207
AseI ATTAAT 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 1659
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 4 cut(s) 110, 1420, 1490, 1793
AsuC2I CCSGG 3 cut(s) 822, 823, 1843
AsuHPI GGTGA 5 cut(s) 466, 807, 1263, 1390, 1618
AsuII TTCGAA 1 cut(s) 770
AvaI CYCGRG 2 cut(s) 171, 821
AvaII GGWCC 2 cut(s) 110, 1793
AxyI CCTNAGG 1 cut(s) 249
BaeGI GKGCMC 3 cut(s) 178, 1615, 2069
BaeI ACNNNNGTAYC 4 cut(s) 1240, 1273, 1388, 1421
BalI TGGCCA 3 cut(s) 613, 2211, 2456
BamHI GGATCC 1 cut(s) 1534
BanII GRGCYC 1 cut(s) 2488
BbsI GAAGAC 3 cut(s) 357, 378, 1911
Bbv12I GWGCWC 3 cut(s) 1615, 2082, 2488
BbvCI CCTCAGC 1 cut(s) 2265
BbvI GCAGC 5 cut(s) 224, 323, 2380, 2381, 2384
BccI CCATC 6 cut(s) 248, 560, 1282, 1510, 1630, 2345
BceAI ACGGC 2 cut(s) 527, 620
BciVI GTATCC 1 cut(s) 965
BclI TGATCA 2 cut(s) 456, 1312
BcnI CCSGG 3 cut(s) 822, 823, 1843
BcoDI GTCTC 1 cut(s) 1275
BfaI CTAG 5 cut(s) 129, 239, 1278, 1478, 1929
BfmI CTRYAG 4 cut(s) 441, 626, 1400, 2038
BfrI CTTAAG 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 965
BglII AGATCT 2 cut(s) 575, 1998
BisI GCNGC 6 cut(s) 213, 337, 1493, 2370, 2373, 2394
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 6 cut(s) 214, 338, 1494, 2371, 2374, 2395
BmcAI AGTACT 1 cut(s) 2044
Bme1390I CCNGG 3 cut(s) 822, 823, 1843
Bme18I GGWCC 2 cut(s) 110, 1793
BmeRI GACNNNNNGTC 1 cut(s) 1923
BmeT110I CYCGRG 2 cut(s) 171, 821
BmgBI CACGTC 1 cut(s) 2449
BmgT120I GGNCC 4 cut(s) 110, 1420, 1490, 1793
BmiI GGNNCC 3 cut(s) 56, 1536, 1716
BmrFI CCNGG 3 cut(s) 822, 823, 1843
BmsI GCATC 5 cut(s) 301, 507, 981, 1186, 1582
BpiI GAAGAC 3 cut(s) 357, 378, 1911
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 1 cut(s) 689
Bpu10I CCTNAGC 2 cut(s) 779, 2265
Bpu1102I GCTNAGC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 770
BpuEI CTTGAG 4 cut(s) 319, 365, 902, 2252
BpuMI CCSGG 3 cut(s) 822, 823, 1843
BsaJI CCNNGG 5 cut(s) 466, 614, 821, 1579, 2220
BsaXI ACNNNNNCTCC 2 cut(s) 1679, 1709
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 620, 987, 1585, 2074
Bse1I ACTGG 2 cut(s) 206, 243
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 1085
BseDI CCNNGG 5 cut(s) 466, 614, 821, 1579, 2220
BseLI CCNNNNNNNGG 5 cut(s) 254, 620, 987, 1585, 2074
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 4 cut(s) 240, 711, 2256, 2512
BseNI ACTGG 2 cut(s) 206, 243
BseRI GAGGAG 1 cut(s) 2421
BseSI GKGCMC 3 cut(s) 178, 1615, 2069
BseXI GCAGC 5 cut(s) 224, 323, 2380, 2381, 2384
BseYI CCCAGC 1 cut(s) 1095
BsgI GTGCAG 1 cut(s) 2111
Bsh1236I CGCG 1 cut(s) 2260
BshFI GGCC 5 cut(s) 613, 1422, 1492, 2211, 2456
BsiHKAI GWGCWC 3 cut(s) 1615, 2082, 2488
BsiHKCI CYCGRG 2 cut(s) 171, 821
BsiSI CCGG 4 cut(s) 100, 477, 822, 1842
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 5 cut(s) 254, 620, 987, 1585, 2074
BsmAI GTCTC 1 cut(s) 1275
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 2 cut(s) 778, 1208
BsnI GGCC 5 cut(s) 613, 1422, 1492, 2211, 2456
BsoBI CYCGRG 2 cut(s) 171, 821
Bsp119I TTCGAA 1 cut(s) 770
Bsp1286I GDGCHC 5 cut(s) 178, 1615, 2069, 2082, 2488
Bsp1407I TGTACA 2 cut(s) 494, 1071
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 5 cut(s) 532, 1091, 1493, 2102, 2260
BspANI GGCC 5 cut(s) 613, 1422, 1492, 2211, 2456
BspCNI CTCAG 4 cut(s) 241, 710, 2257, 2511
BspFNI CGCG 1 cut(s) 2260
BspHI TCATGA 1 cut(s) 2473
BspLI GGNNCC 3 cut(s) 56, 1536, 1716
BspMAI CTGCAG 2 cut(s) 630, 2042
BspPI GGATC 6 cut(s) 257, 739, 1133, 1529, 1542, 1708
BspT104I TTCGAA 1 cut(s) 770
BspTI CTTAAG 1 cut(s) 1000
BsrDI GCAATG 1 cut(s) 1085
BsrGI TGTACA 2 cut(s) 494, 1071
BsrI ACTGG 2 cut(s) 206, 243
BssECI CCNNGG 5 cut(s) 466, 614, 821, 1579, 2220
BssNAI GTATAC 1 cut(s) 1643
BssT1I CCWWGG 2 cut(s) 614, 1579
Bst1107I GTATAC 1 cut(s) 1643
Bst4CI ACNGT 9 cut(s) 166, 494, 1071, 1219, 1378, 1404, 1595, 1617, 2221
Bst6I CTCTTC 4 cut(s) 951, 1294, 1560, 1631
BstAFI CTTAAG 1 cut(s) 1000
BstAUI TGTACA 2 cut(s) 494, 1071
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 7 cut(s) 1093, 1208, 2102, 2209, 2213, 2262, 2454
BstDSI CCRYGG 1 cut(s) 2220
BstFNI CGCG 1 cut(s) 2260
BstHHI GCGC 1 cut(s) 778
BstMAI GTCTC 1 cut(s) 1275
BstMWI GCNNNNNNNGC 2 cut(s) 1101, 1805
BstNSI RCATGY 2 cut(s) 1078, 2090
BstSCI CCNGG 3 cut(s) 820, 821, 1841
BstSFI CTRYAG 4 cut(s) 441, 626, 1400, 2038
BstSLI GKGCMC 3 cut(s) 178, 1615, 2069
BstUI CGCG 1 cut(s) 2260
BstV1I GCAGC 5 cut(s) 224, 323, 2380, 2381, 2384
BstV2I GAAGAC 3 cut(s) 357, 378, 1911
BstX2I RGATCY 6 cut(s) 262, 575, 744, 1534, 1700, 1998
BstYI RGATCY 6 cut(s) 262, 575, 744, 1534, 1700, 1998
BstZ17I GTATAC 1 cut(s) 1643
Bsu36I CCTNAGG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 965
BsuRI GGCC 5 cut(s) 613, 1422, 1492, 2211, 2456
BtgI CCRYGG 1 cut(s) 2220
BtrI CACGTC 1 cut(s) 2449
BtsI GCAGTG 2 cut(s) 1842, 1971
BtsIMutI CAGTG 5 cut(s) 1263, 1613, 1842, 1920, 1971
Cac8I GCNNGC 7 cut(s) 1093, 1208, 2102, 2209, 2213, 2262, 2454
CciI TCATGA 1 cut(s) 2473
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 4 cut(s) 110, 1420, 1490, 1793
Cfr9I CCCGGG 1 cut(s) 821
CseI GACGC 1 cut(s) 2276
Csp6I GTAC 6 cut(s) 155, 224, 495, 1072, 1405, 2043
CviQI GTAC 6 cut(s) 155, 224, 495, 1072, 1405, 2043
DraI TTTAAA 1 cut(s) 1170
DraIII CACNNNGTG 1 cut(s) 2221
DriI GACNNNNNGTC 1 cut(s) 1923
EaeI YGGCCR 3 cut(s) 611, 2209, 2454
Eam1104I CTCTTC 4 cut(s) 951, 1294, 1560, 1631
Eam1105I GACNNNNNGTC 1 cut(s) 1923
EarI CTCTTC 4 cut(s) 951, 1294, 1560, 1631
Ecl136II GAGCTC 1 cut(s) 2486
Eco130I CCWWGG 2 cut(s) 614, 1579
Eco24I GRGCYC 1 cut(s) 2488
Eco47I GGWCC 2 cut(s) 110, 1793
Eco53kI GAGCTC 1 cut(s) 2486
Eco57I CTGAAG 6 cut(s) 582, 702, 932, 1725, 2015, 2385
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 171, 821
EcoICRI GAGCTC 1 cut(s) 2486
EcoO109I RGGNCCY 1 cut(s) 1420
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 614, 1579
EcoT22I ATGCAT 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 2488
ErhI CCWWGG 2 cut(s) 614, 1579
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 2472, 2504
FaqI GGGAC 1 cut(s) 448
FauI CCCGC 4 cut(s) 525, 1084, 2109, 2253
FauNDI CATATG 2 cut(s) 1253, 1784
FbaI TGATCA 2 cut(s) 456, 1312
FblI GTMKAC 1 cut(s) 1642
Fnu4HI GCNGC 6 cut(s) 213, 337, 1493, 2370, 2373, 2394
FriOI GRGCYC 1 cut(s) 2488
Fsp4HI GCNGC 6 cut(s) 213, 337, 1493, 2370, 2373, 2394
FspBI CTAG 5 cut(s) 129, 239, 1278, 1478, 1929
GlaI GCGC 1 cut(s) 777
GluI GCNGC 6 cut(s) 213, 337, 1493, 2370, 2373, 2394
GsaI CCCAGC 1 cut(s) 1099
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 5 cut(s) 613, 1422, 1492, 2211, 2456
HapII CCGG 4 cut(s) 100, 477, 822, 1842
HgaI GACGC 1 cut(s) 2276
HhaI GCGC 1 cut(s) 778
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 2194
HindII GTYRAC 1 cut(s) 2194
HindIII AAGCTT 2 cut(s) 852, 1181
HinfI GANTC 5 cut(s) 47, 922, 1268, 1330, 1918
HpaII CCGG 4 cut(s) 100, 477, 822, 1842
HphI GGTGA 5 cut(s) 466, 807, 1263, 1390, 1618
Hpy166II GTNNAC 6 cut(s) 1243, 1613, 1643, 1969, 2194, 2224
Hpy8I GTNNAC 6 cut(s) 1243, 1613, 1643, 1969, 2194, 2224
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 6 cut(s) 497, 928, 1381, 1449, 1700, 2474
HpyCH4III ACNGT 9 cut(s) 166, 494, 1071, 1219, 1378, 1404, 1595, 1617, 2221
HpyCH4IV ACGT 1 cut(s) 2448
HpyF10VI GCNNNNNNNGC 2 cut(s) 1101, 1805
HpySE526I ACGT 1 cut(s) 2448
HspAI GCGC 1 cut(s) 776
Ksp22I TGATCA 2 cut(s) 456, 1312
LmnI GCTCC 4 cut(s) 1714, 1804, 2077, 2483
Lsp1109I GCAGC 5 cut(s) 224, 323, 2380, 2381, 2384
LweI GCATC 5 cut(s) 301, 507, 981, 1186, 1582
MaeI CTAG 5 cut(s) 129, 239, 1278, 1478, 1929
MaeII ACGT 1 cut(s) 2448
MflI RGATCY 6 cut(s) 262, 575, 744, 1534, 1700, 1998
MhlI GDGCHC 5 cut(s) 178, 1615, 2069, 2082, 2488
MlsI TGGCCA 3 cut(s) 613, 2211, 2456
MluNI TGGCCA 3 cut(s) 613, 2211, 2456
MlyI GAGTC 2 cut(s) 1324, 1912
MmeI TCCRAC 1 cut(s) 1692
Mox20I TGGCCA 3 cut(s) 613, 2211, 2456
Mph1103I ATGCAT 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 1659
MscI TGGCCA 3 cut(s) 613, 2211, 2456
MseI TTAA 7 cut(s) 795, 831, 881, 1001, 1169, 1824, 2490
MslI CAYNNNNRTG 3 cut(s) 1116, 1436, 2085
Msp20I TGGCCA 3 cut(s) 613, 2211, 2456
MspA1I CMGCKG 2 cut(s) 2136, 2207
MspCI CTTAAG 1 cut(s) 1000
MspI CCGG 4 cut(s) 100, 477, 822, 1842
MspR9I CCNGG 3 cut(s) 822, 823, 1843
Mva1269I GAATGC 2 cut(s) 778, 1208
MvnI CGCG 1 cut(s) 2260
MwoI GCNNNNNNNGC 2 cut(s) 1101, 1805
NciI CCSGG 3 cut(s) 822, 823, 1843
NdeI CATATG 2 cut(s) 1253, 1784
NlaIV GGNNCC 3 cut(s) 56, 1536, 1716
NmuCI GTSAC 4 cut(s) 813, 1378, 1595, 1915
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 2 cut(s) 1078, 2090
NspV TTCGAA 1 cut(s) 770
PagI TCATGA 1 cut(s) 2473
PctI GAATGC 2 cut(s) 778, 1208
PdmI GAANNNNTTC 1 cut(s) 1659
PfeI GAWTC 3 cut(s) 47, 922, 1268
PflFI GACNNNGTC 1 cut(s) 2189
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 6 cut(s) 214, 338, 1494, 2371, 2374, 2395
PleI GAGTC 2 cut(s) 1324, 1912
PpsI GAGTC 2 cut(s) 1324, 1912
PshBI ATTAAT 1 cut(s) 831
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 2488
PspFI CCCAGC 1 cut(s) 1095
PspN4I GGNNCC 3 cut(s) 56, 1536, 1716
PspPI GGNCC 4 cut(s) 110, 1420, 1490, 1793
PstI CTGCAG 2 cut(s) 630, 2042
PsuI RGATCY 6 cut(s) 262, 575, 744, 1534, 1700, 1998
PsyI GACNNNGTC 1 cut(s) 2189
PvuII CAGCTG 2 cut(s) 2136, 2207
RsaI GTAC 6 cut(s) 156, 225, 496, 1073, 1406, 2044
RsaNI GTAC 6 cut(s) 155, 224, 495, 1072, 1405, 2043
RseI CAYNNNNRTG 3 cut(s) 1116, 1436, 2085
SacI GAGCTC 1 cut(s) 2488
SaqAI TTAA 7 cut(s) 795, 831, 881, 1001, 1169, 1824, 2490
SatI GCNGC 6 cut(s) 213, 337, 1493, 2370, 2373, 2394
Sau96I GGNCC 4 cut(s) 110, 1420, 1490, 1793
ScaI AGTACT 1 cut(s) 2044
SchI GAGTC 2 cut(s) 1324, 1912
ScrFI CCNGG 3 cut(s) 822, 823, 1843
SduI GDGCHC 5 cut(s) 178, 1615, 2069, 2082, 2488
SfaNI GCATC 5 cut(s) 301, 507, 981, 1186, 1582
SfcI CTRYAG 4 cut(s) 441, 626, 1400, 2038
SfuI TTCGAA 1 cut(s) 770
SinI GGWCC 2 cut(s) 110, 1793
SmaI CCCGGG 1 cut(s) 823
SmiMI CAYNNNNRTG 3 cut(s) 1116, 1436, 2085
SmlI CTYRAG 5 cut(s) 298, 380, 917, 1000, 2231
SmoI CTYRAG 5 cut(s) 298, 380, 917, 1000, 2231
SsiI CCGC 5 cut(s) 532, 1091, 1493, 2102, 2260
SspI AATATT 1 cut(s) 808
SspMI CTAG 5 cut(s) 129, 239, 1278, 1478, 1929
SstI GAGCTC 1 cut(s) 2488
StyD4I CCNGG 3 cut(s) 820, 821, 1841
StyI CCWWGG 2 cut(s) 614, 1579
TaaI ACNGT 9 cut(s) 166, 494, 1071, 1219, 1378, 1404, 1595, 1617, 2221
TaiI ACGT 1 cut(s) 2451
TaqI TCGA 6 cut(s) 27, 217, 369, 770, 1248, 1554
TatI WGTACW 4 cut(s) 154, 494, 1071, 2042
TauI GCSGC 1 cut(s) 1495
TfiI GAWTC 3 cut(s) 47, 922, 1268
Tru1I TTAA 7 cut(s) 795, 831, 881, 1001, 1169, 1824, 2490
Tru9I TTAA 7 cut(s) 795, 831, 881, 1001, 1169, 1824, 2490
TscAI CASTG 5 cut(s) 1270, 1620, 1842, 1920, 1971
TseFI GTSAC 4 cut(s) 813, 1378, 1595, 1915
TseI GCWGC 5 cut(s) 212, 336, 2369, 2372, 2393
Tsp45I GTSAC 4 cut(s) 813, 1378, 1595, 1915
TspDTI ATGAA 7 cut(s) 11, 77, 674, 947, 1100, 1886, 2493
TspMI CCCGGG 1 cut(s) 821
TspRI CASTG 5 cut(s) 1270, 1620, 1842, 1920, 1971
Tth111I GACNNNGTC 1 cut(s) 2189
Van91I CCANNNNNTGG 1 cut(s) 620
Vha464I CTTAAG 1 cut(s) 1000
VneI GTGCAC 1 cut(s) 1611
VpaK11BI GGWCC 2 cut(s) 110, 1793
VspI ATTAAT 1 cut(s) 831
XapI RAATTY 6 cut(s) 18, 448, 1107, 1627, 2248, 2280
XbaI TCTAGA 1 cut(s) 1277
XceI RCATGY 2 cut(s) 1078, 2090
XmaI CCCGGG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 1642
XmnI GAANNNNTTC 1 cut(s) 1659
XspI CTAG 5 cut(s) 129, 239, 1278, 1478, 1929
ZrmI AGTACT 1 cut(s) 2044
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.