Rorug03G0240700

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000085
Physical Location & Seq
Reverse (-)
22485708 .. 22489047
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0240700.1

Sequence Viewer

Length: 1704 bp
ATGATTAGTTTACATAGTACCGTGTCTGGCCGTATTGATTATCATCCTGGGATTCTCATTTCTCAAAGGTCGGTTCAACTGGAGCAGGGGGGCGAGACTGAGAATAGTGTTTATGATACTTGGTCATTCACATTTGGCAAGCTTAGCTCGATGGCGGACGGTATTGAGGAGCTTGCGGACTCCGAAAGTCTGCGCGAAACCGAGATGAGCTTTGGATCCTATATACATAAACAGCCAGAGAGCGAGATGAGCTTTACCCAAAAGATGTATCGAAAGAAACTTAAGTGGACCACCGAAATCGAAGAAAAGCTCCACAATGTGCGGCCGTGGAACTTGGGCATCTACAGAGTTCCAAATAGACTTCGTCAAGTCGATGAGGATTCCTACAGCCCTCATGTTGTCGCCATCGGTCCTTTCCATCGACACAAGCCTAACCTAGTAGCTACGAGAGAGCACAAGTCGCGTTATGCGCTATACTTCTTTAAGCAAGCACAAGAAATAGCACAAAAACGAGCTCTAAGTTTCAGCTTTGGATCGCGCGAGTCTTCCGAATGCATGAGAGAGTGGGCGACTGCTATTTATGATTCGGACGCAGAGGTTCGTGGAAGCTACGCTGAAGATATGAGCAACATTGATCAGAAGGAACTAGCAGAAATAATGTTGGTCGATGGTTGCTTCTTATTAGAACTTTTCATCAGGTTTTACCTATACGTGCACGGGAAGTTAGAAGGCCCTGAATCTGATCCAATTCTAGAAAGTGCTTGGATGATTGCAGATCTACGGCACGATCTGGCATTGCTTGAAAACCAAATCCCCTTATTTATTATACATGATTTGTATGATGCTATCAGTGGTCATCAGATTCTTGTCGACAATGATTTGCCTCCGCCACATGGTCTTGCTCTTCATTTCTTTCAACCTGTGAGCCTCAAGGCAAGCATTGTAACAGAGTGGAGACATGAGCACAAGCATTTGCTGGATATCTTGCACAAGTTCTATTTCCTTCCGACTAAAACTACGGACTTGTCTATGAGGCTCAATATGGAATTGATCCCTGAGGAGCAGCGTCTTAGGGCAGTCCAAAAGAATAAAGTATGGGGATTCAATTATTGTGCCTCCGAACTTTTGGAATCTGGAGTCGAGTTTGGCATTGGCTCCAGCCAGGACCAGTTGCTGGACATAACTTTCCATGAGGGAGTAATCAGAATTCCACCACTGTTTATCCACGAGACAACGAGTTCATTGTTGAGGAACCTGATTGCTTATGAGCAATGCAGTCTTAGTAGTACGCATGGCGTTACATCATATGCCTGCCTCATGAAGAGTCTCATCGATTCCTCGCGGGATAGCAATCTGCTTCAGGAGAAGGGGATAACAAAATATCACCACTGGATTGGAGGTGAAGATGAATATTTGACTCAAATATTCAGAAGTATACTAGATGAAGTTGTTGTCAAGGAATTCCATTTTAGAACCTTGTGTGATGAAGTGAATGAATACTACTCACCTGAGCATTCATCAGTGGAGCACTGTAGTCCTGATGCTTCACAGCTTCTATCCCTCTCCAAAACTGATCTTTCCATCAGAAAACTTTCAGAAAACCAAGTAGATAACAATGGAACGACAACAGCTGCCACATTATTCATACTACCCTTTTCAGGTGCAGTATTCACAATGCAGTCGGCTAATGAGTGTAAGAATTGA

Protein Analysis

567

Amino Acids

65.02

Weight (kDa)

5.4

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 114 - 503 3.9e-88 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1174
AccI GTMKAC 2 cut(s) 870, 1435
AccII CGCG 5 cut(s) 195, 463, 538, 540, 1342
AciI CCGC 5 cut(s) 155, 176, 322, 887, 1342
AclWI GGATC 5 cut(s) 210, 223, 541, 737, 1045
AcoI YGGCCR 2 cut(s) 28, 323
AcsI RAATTY 2 cut(s) 1206, 1460
AcuI CTGAAG 2 cut(s) 636, 1343
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 19, 1288
AfiI CCNNNNNNNGG 3 cut(s) 893, 1174, 1658
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 4 cut(s) 77, 803, 917, 1105
AjnI CCWGG 2 cut(s) 46, 1161
Alw21I GWGCWC 5 cut(s) 456, 517, 717, 966, 1530
Alw26I GTCTC 4 cut(s) 89, 949, 1223, 1331
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 5 cut(s) 210, 223, 541, 737, 1045
AlwNI CAGNNNCTG 1 cut(s) 1174
AoxI GGCC 3 cut(s) 28, 323, 730
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 1063, 1631
ApoI RAATTY 2 cut(s) 1206, 1460
Asp700I GAANNNNTTC 1 cut(s) 1591
AspLEI GCGC 3 cut(s) 195, 472, 540
AspS9I GGNCC 4 cut(s) 288, 410, 731, 1165
AsuHPI GGTGA 3 cut(s) 1376, 1412, 1497
AvaII GGWCC 3 cut(s) 288, 410, 1165
AxyI CCTNAGG 1 cut(s) 1056
BaeGI GKGCMC 1 cut(s) 717
BamHI GGATCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 517
BauI CACGAG 1 cut(s) 1226
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 5 cut(s) 456, 517, 717, 966, 1530
BbvI GCAGC 2 cut(s) 1075, 1618
BccI CCATC 5 cut(s) 145, 413, 426, 662, 1589
BceAI ACGGC 3 cut(s) 15, 310, 797
BciT130I CCWGG 2 cut(s) 48, 1163
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 4 cut(s) 89, 949, 1223, 1331
BfaI CTAG 4 cut(s) 437, 647, 752, 1439
BfmI CTRYAG 3 cut(s) 343, 385, 1531
BfrI CTTAAG 1 cut(s) 281
BglII AGATCT 1 cut(s) 775
BisI GCNGC 3 cut(s) 323, 1064, 1632
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 3 cut(s) 324, 1065, 1633
Bme1390I CCNGG 2 cut(s) 48, 1163
Bme18I GGWCC 3 cut(s) 288, 410, 1165
BmgT120I GGNCC 4 cut(s) 288, 410, 731, 1165
BmiI GGNNCC 3 cut(s) 217, 1156, 1253
BmrFI CCNGG 2 cut(s) 48, 1163
BmsI GCATC 3 cut(s) 348, 832, 1531
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 3 cut(s) 101, 1141, 1155
Bpu10I CCTNAGC 1 cut(s) 1509
Bpu1102I GCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 914
Bsa29I ATCGAT 1 cut(s) 1332
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 2 cut(s) 42, 1350
BsaJI CCNNGG 2 cut(s) 47, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 893, 1174, 1658
Bse1I ACTGG 3 cut(s) 84, 1168, 1394
Bse21I CCTNAGG 1 cut(s) 1056
Bse3DI GCAATG 2 cut(s) 794, 1277
Bse8I GATNNNNATC 2 cut(s) 42, 1350
BseBI CCWGG 2 cut(s) 48, 1163
BseCI ATCGAT 1 cut(s) 1332
BseDI CCNNGG 2 cut(s) 47, 326
BseGI GGATG 2 cut(s) 43, 771
BseJI GATNNNNATC 2 cut(s) 42, 1350
BseLI CCNNNNNNNGG 3 cut(s) 893, 1174, 1658
BseMI GCAATG 2 cut(s) 794, 1277
BseMII CTCAG 3 cut(s) 90, 1047, 1500
BseNI ACTGG 3 cut(s) 84, 1168, 1394
BseRI GAGGAG 2 cut(s) 182, 1073
BseSI GKGCMC 1 cut(s) 717
BseX3I CGGCCG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 1075, 1618
BsgI GTGCAG 1 cut(s) 1683
Bsh1236I CGCG 5 cut(s) 195, 463, 538, 540, 1342
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 3 cut(s) 30, 325, 732
BshVI ATCGAT 1 cut(s) 1332
BsiEI CGRYCG 1 cut(s) 326
BsiHKAI GWGCWC 5 cut(s) 456, 517, 717, 966, 1530
BslI CCNNNNNNNGG 3 cut(s) 893, 1174, 1658
BsmAI GTCTC 4 cut(s) 89, 949, 1223, 1331
BsmI GAATGC 2 cut(s) 557, 1513
BsnI GGCC 3 cut(s) 30, 325, 732
Bsp1286I GDGCHC 5 cut(s) 456, 517, 717, 966, 1530
Bsp143I GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 5 cut(s) 155, 176, 322, 887, 1342
BspANI GGCC 3 cut(s) 30, 325, 732
BspCNI CTCAG 3 cut(s) 91, 1048, 1501
BspDI ATCGAT 1 cut(s) 1332
BspFNI CGCG 5 cut(s) 195, 463, 538, 540, 1342
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 3 cut(s) 217, 1156, 1253
BspPI GGATC 5 cut(s) 210, 223, 541, 737, 1045
BspQI GCTCTTC 1 cut(s) 909
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 794, 1277
BsrI ACTGG 3 cut(s) 84, 1168, 1394
BssECI CCNNGG 2 cut(s) 47, 326
BssMI GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
BssNAI GTATAC 1 cut(s) 1436
BssSI CACGAG 1 cut(s) 1226
Bst1107I GTATAC 1 cut(s) 1436
Bst2BI CACGAG 1 cut(s) 1226
Bst2UI CCWGG 2 cut(s) 48, 1163
Bst4CI ACNGT 4 cut(s) 22, 161, 1218, 1532
Bst6I CTCTTC 2 cut(s) 909, 1316
BstAFI CTTAAG 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 712
BstC8I GCNNGC 5 cut(s) 140, 174, 489, 937, 1312
BstDEI CTNAG 7 cut(s) 99, 143, 518, 1056, 1070, 1280, 1509
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 43, 771
BstFNI CGCG 5 cut(s) 195, 463, 538, 540, 1342
BstHHI GCGC 3 cut(s) 195, 472, 540
BstKTI GATC 8 cut(s) 218, 536, 637, 745, 778, 790, 1053, 1576
BstMAI GTCTC 4 cut(s) 89, 949, 1223, 1331
BstMBI GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 4 cut(s) 144, 249, 460, 469
BstNI CCWGG 2 cut(s) 48, 1163
BstSCI CCNGG 2 cut(s) 46, 1161
BstSFI CTRYAG 3 cut(s) 343, 385, 1531
BstSLI GKGCMC 1 cut(s) 717
BstUI CGCG 5 cut(s) 195, 463, 538, 540, 1342
BstV1I GCAGC 2 cut(s) 1075, 1618
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 2 cut(s) 215, 775
BstXI CCANNNNNNTGG 1 cut(s) 1394
BstYI RGATCY 2 cut(s) 215, 775
BstZ17I GTATAC 1 cut(s) 1436
BstZI CGGCCG 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 1332
Bsu36I CCTNAGG 1 cut(s) 1056
BsuRI GGCC 3 cut(s) 30, 325, 732
BsuTUI ATCGAT 1 cut(s) 1332
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 2 cut(s) 43, 771
BtsIMutI CAGTG 5 cut(s) 856, 1214, 1387, 1527, 1528
Cac8I GCNNGC 5 cut(s) 140, 174, 489, 937, 1312
CaiI CAGNNNCTG 1 cut(s) 1174
CciI TCATGA 1 cut(s) 1317
CfoI GCGC 3 cut(s) 195, 472, 540
Cfr13I GGNCC 4 cut(s) 288, 410, 731, 1165
ClaI ATCGAT 1 cut(s) 1332
CseI GACGC 2 cut(s) 599, 1055
Csp6I GTAC 2 cut(s) 18, 1287
CviAII CATG 8 cut(s) 395, 556, 830, 893, 959, 1190, 1292, 1318
CviQI GTAC 2 cut(s) 18, 1287
DdeI CTNAG 7 cut(s) 99, 143, 518, 1056, 1070, 1280, 1509
DpnI GATC 8 cut(s) 217, 535, 636, 744, 777, 789, 1052, 1575
DpnII GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 28, 323
EagI CGGCCG 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 909, 1316
EarI CTCTTC 2 cut(s) 909, 1316
EciI GGCGGA 2 cut(s) 170, 876
Ecl136II GAGCTC 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 3 cut(s) 288, 410, 1165
Eco52I CGGCCG 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 2 cut(s) 636, 1343
Eco81I CCTNAGG 1 cut(s) 1056
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 731
EcoRI GAATTC 2 cut(s) 1206, 1460
EcoRII CCWGG 2 cut(s) 46, 1161
EcoRV GATATC 1 cut(s) 982
EcoT22I ATGCAT 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 517
FaeI CATG 8 cut(s) 398, 559, 833, 896, 962, 1193, 1295, 1321
FatI CATG 8 cut(s) 394, 555, 829, 892, 958, 1189, 1291, 1317
FauI CCCGC 1 cut(s) 1335
FauNDI CATATG 1 cut(s) 1306
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 2 cut(s) 870, 1435
Fnu4HI GCNGC 3 cut(s) 323, 1064, 1632
FokI GGATG 2 cut(s) 30, 778
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 323, 1064, 1632
FspBI CTAG 4 cut(s) 437, 647, 752, 1439
GlaI GCGC 3 cut(s) 194, 471, 539
GluI GCNGC 3 cut(s) 323, 1064, 1632
GsuI CTGGAG 3 cut(s) 101, 1141, 1155
HaeIII GGCC 3 cut(s) 30, 325, 732
HgaI GACGC 2 cut(s) 599, 1055
HhaI GCGC 3 cut(s) 195, 472, 540
Hin1II CATG 8 cut(s) 398, 559, 833, 896, 962, 1193, 1295, 1321
Hin6I GCGC 3 cut(s) 193, 470, 538
HinP1I GCGC 3 cut(s) 193, 470, 538
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HindIII AAGCTT 1 cut(s) 140
HphI GGTGA 3 cut(s) 1376, 1412, 1497
Hpy166II GTNNAC 5 cut(s) 11, 288, 715, 871, 1436
Hpy188III TCNNGA 5 cut(s) 752, 1134, 1318, 1361, 1538
Hpy8I GTNNAC 5 cut(s) 11, 288, 715, 871, 1436
HpyAV CCTTC 4 cut(s) 634, 722, 1013, 1360
HpyCH4III ACNGT 4 cut(s) 22, 161, 1218, 1532
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 7 cut(s) 555, 715, 773, 988, 1275, 1664, 1678
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 249, 460, 469
HpyF3I CTNAG 7 cut(s) 99, 143, 518, 1056, 1070, 1280, 1509
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 8 cut(s) 398, 559, 833, 896, 962, 1193, 1295, 1321
HspAI GCGC 3 cut(s) 193, 470, 538
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 6 cut(s) 82, 169, 315, 1060, 1160, 1525
Lsp1109I GCAGC 2 cut(s) 1075, 1618
LweI GCATC 3 cut(s) 348, 832, 1531
MaeI CTAG 4 cut(s) 437, 647, 752, 1439
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 943, 1297
MalI GATC 8 cut(s) 217, 535, 636, 744, 777, 789, 1052, 1575
MboI GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
MboII GAAGA 6 cut(s) 314, 537, 629, 896, 1333, 1415
MflI RGATCY 2 cut(s) 215, 775
MhlI GDGCHC 5 cut(s) 456, 517, 717, 966, 1530
MluCI AATT 6 cut(s) 747, 1046, 1105, 1206, 1460, 1699
MlyI GAGTC 5 cut(s) 173, 551, 1146, 1333, 1411
MmeI TCCRAC 1 cut(s) 1031
Mph1103I ATGCAT 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 1591
MseI TTAA 2 cut(s) 282, 483
MspA1I CMGCKG 1 cut(s) 1631
MspCI CTTAAG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 48, 1163
Mva1269I GAATGC 2 cut(s) 557, 1513
MvaI CCWGG 2 cut(s) 48, 1163
MvnI CGCG 5 cut(s) 195, 463, 538, 540, 1342
MwoI GCNNNNNNNGC 4 cut(s) 144, 249, 460, 469
NdeI CATATG 1 cut(s) 1306
NdeII GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
NlaIII CATG 8 cut(s) 398, 559, 833, 896, 962, 1193, 1295, 1321
NlaIV GGNNCC 3 cut(s) 217, 1156, 1253
NsiI ATGCAT 1 cut(s) 557
PagI TCATGA 1 cut(s) 1317
PciSI GCTCTTC 1 cut(s) 909
PctI GAATGC 2 cut(s) 557, 1513
PdmI GAANNNNTTC 1 cut(s) 1591
PfeI GAWTC 8 cut(s) 52, 380, 584, 737, 862, 1101, 1130, 1334
PflFI GACNNNGTC 1 cut(s) 363
PflMI CCANNNNNTGG 1 cut(s) 1174
PkrI GCNGC 3 cut(s) 324, 1065, 1633
PleI GAGTC 5 cut(s) 173, 550, 1145, 1332, 1411
PpsI GAGTC 5 cut(s) 173, 550, 1145, 1332, 1411
Ppu21I YACGTR 1 cut(s) 712
Psp124BI GAGCTC 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 46, 1161
PspGI CCWGG 2 cut(s) 46, 1161
PspN4I GGNNCC 3 cut(s) 217, 1156, 1253
PspPI GGNCC 4 cut(s) 288, 410, 731, 1165
PstNI CAGNNNCTG 1 cut(s) 1174
PsuI RGATCY 2 cut(s) 215, 775
PsyI GACNNNGTC 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 1631
RsaI GTAC 2 cut(s) 19, 1288
RsaNI GTAC 2 cut(s) 18, 1287
SacI GAGCTC 1 cut(s) 517
SalI GTCGAC 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 282, 483
SatI GCNGC 3 cut(s) 323, 1064, 1632
Sau3AI GATC 8 cut(s) 215, 533, 634, 742, 775, 787, 1050, 1573
Sau96I GGNCC 4 cut(s) 288, 410, 731, 1165
SchI GAGTC 5 cut(s) 173, 551, 1146, 1333, 1411
ScrFI CCNGG 2 cut(s) 48, 1163
SduI GDGCHC 5 cut(s) 456, 517, 717, 966, 1530
SfaNI GCATC 3 cut(s) 348, 832, 1531
SfcI CTRYAG 3 cut(s) 343, 385, 1531
SinI GGWCC 3 cut(s) 288, 410, 1165
SmlI CTYRAG 2 cut(s) 281, 929
SmoI CTYRAG 2 cut(s) 281, 929
Sse9I AATT 6 cut(s) 747, 1046, 1105, 1206, 1460, 1699
SsiI CCGC 5 cut(s) 155, 176, 322, 887, 1342
SspI AATATT 2 cut(s) 1412, 1425
SspMI CTAG 4 cut(s) 437, 647, 752, 1439
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 46, 1161
TaaI ACNGT 4 cut(s) 22, 161, 1218, 1532
TaiI ACGT 1 cut(s) 714
TaqI TCGA 9 cut(s) 149, 271, 300, 372, 421, 666, 870, 1140, 1332
TaqII GACCGA 1 cut(s) 398
TasI AATT 6 cut(s) 747, 1046, 1105, 1206, 1460, 1699
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 8 cut(s) 52, 380, 584, 737, 862, 1101, 1130, 1334
Tru1I TTAA 2 cut(s) 282, 483
Tru9I TTAA 2 cut(s) 282, 483
TscAI CASTG 5 cut(s) 856, 1221, 1394, 1527, 1535
TseI GCWGC 2 cut(s) 1063, 1631
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 5 cut(s) 856, 1221, 1394, 1527, 1535
Tth111I GACNNNGTC 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 1174
Vha464I CTTAAG 1 cut(s) 281
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 3 cut(s) 288, 410, 1165
XapI RAATTY 2 cut(s) 1206, 1460
XbaI TCTAGA 1 cut(s) 751
XmiI GTMKAC 2 cut(s) 870, 1435
XmnI GAANNNNTTC 1 cut(s) 1591
XspI CTAG 4 cut(s) 437, 647, 752, 1439
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.