Rmu_co8200400.1_g000001

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8200400.1
Physical Location & Seq
Forward (+)
83 .. 711
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8200400.1_g000001.1.cds

Sequence Viewer

Length: 629 bp
atggctgtcgtatcccaaaaccccgacttgatgaaaattcaacagacatttgcagaaatgctgggcttgaaattggaggagaagacagaaattgtaagagccagtaaattgaaggagaagatattgggagaaactgggatcctcataatcttggatgacatttggaagagcatagacttttcaagcattggaattccaagccacaacgaacttcaaagatgcaattccaaagttctactgactactagaaaattgactgtttgccattccatggattgccatgcaaaagtacatctcaatatcttatcagaagaagattcttggagcttatttgtgaaggaagcaaggaagtaccctcttgacaaatcatccactttctatgatgtggcacgtaaggtggctagagaatgcgccggtctaccacttgctttgatagcagtcgcgagggcccttcgaggtcaaggtttggatggatggaaagaagctgctcgacaactacaagcgtctcaacctcccaaccctgaagatgagggagttgtgtatgcatccataaagttaagctatgattacttgaaatctgatgattccaaatcatgcttcttgctttgctgcctgttcccagaagatta

Protein Analysis

209

Amino Acids

23.43

Weight (kDa)

6.12

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AccI GTMKAC 1 cut(s) 418
AccII CGCG 1 cut(s) 443
AclWI GGATC 2 cut(s) 133, 146
AcsI RAATTY 2 cut(s) 36, 192
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 291, 353
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 6 cut(s) 41, 70, 112, 183, 215, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 3 cut(s) 327, 485, 561
AluI AGCT 3 cut(s) 327, 485, 561
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 2 cut(s) 133, 146
AoxI GGCC 1 cut(s) 447
ApaI GGGCCC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 485, 609
ApoI RAATTY 2 cut(s) 36, 192
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 447, 448
BaeGI GKGCMC 1 cut(s) 451
BamHI GGATCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 472, 596
BccI CCATC 2 cut(s) 464, 468
BciVI GTATCC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 246, 402
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 2 cut(s) 486, 610
BlsI GCNGC 2 cut(s) 487, 611
BmgT120I GGNCC 2 cut(s) 447, 448
BmiI GGNNCC 2 cut(s) 140, 449
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 209, 554
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 102, 139
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 5 cut(s) 160, 368, 475, 479, 545
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 102, 139
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 472, 596
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 510
BsmBI CGTCTC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 449
Bsp120I GGGCCC 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 270
Bsp68I TCGCGA 1 cut(s) 443
BspANI GGCC 1 cut(s) 449
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 2 cut(s) 140, 449
BspPI GGATC 2 cut(s) 133, 146
BspQI GCTCTTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 2 cut(s) 102, 139
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 5 cut(s) 160, 368, 475, 479, 545
BstFNI CGCG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 472, 596
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 160, 368, 475, 479, 545
BtuMI TCGCGA 1 cut(s) 443
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 447, 448
CseI GACGC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 290, 352
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 3 cut(s) 271, 281, 594
CviJI RGCY 9 cut(s) 5, 66, 101, 201, 327, 401, 449, 485, 561
CviKI_1 RGCY 9 cut(s) 5, 66, 101, 201, 327, 401, 449, 485, 561
CviQI GTAC 2 cut(s) 290, 352
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 543
EcoO109I RGGNCCY 2 cut(s) 447, 448
EcoRI GAATTC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 3 cut(s) 274, 284, 597
FaiI YATR 9 cut(s) 146, 173, 272, 282, 381, 543, 551, 564, 595
FatI CATG 3 cut(s) 270, 280, 593
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 486, 610
FokI GGATG 5 cut(s) 167, 355, 482, 486, 532
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 486, 610
FspBI CTAG 2 cut(s) 246, 402
GlaI GCGC 1 cut(s) 412
GluI GCNGC 2 cut(s) 486, 610
GsaI CCCAGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 492
HhaI GCGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 274, 284, 597
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 2 cut(s) 317, 584
HpaII CCGG 1 cut(s) 414
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 310, 580
Hpy188III TCNNGA 2 cut(s) 359, 442
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 106, 331, 461
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 53, 222, 284, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 3 cut(s) 274, 284, 597
HspAI GCGC 1 cut(s) 411
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 47, 115, 120, 427, 534
Lsp1109I GCAGC 2 cut(s) 472, 596
LweI GCATC 2 cut(s) 209, 554
MaeI CTAG 2 cut(s) 246, 402
MaeII ACGT 1 cut(s) 391
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 6 cut(s) 94, 130, 178, 323, 326, 536
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 7 cut(s) 36, 71, 90, 107, 192, 223, 251
MnlI CCTC 7 cut(s) 70, 152, 366, 438, 449, 522, 523
Mph1103I ATGCAT 1 cut(s) 547
MseI TTAA 1 cut(s) 557
MspI CCGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 413
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 138
NlaIII CATG 3 cut(s) 274, 284, 597
NlaIV GGNNCC 2 cut(s) 140, 449
NruI TCGCGA 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 161
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 317, 584
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 2 cut(s) 487, 611
Ppu21I YACGTR 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 140, 449
PspOMI GGGCCC 1 cut(s) 447
PspPI GGNCC 2 cut(s) 447, 448
PsuI RGATCY 1 cut(s) 138
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 2 cut(s) 291, 353
RsaNI GTAC 2 cut(s) 290, 352
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 2 cut(s) 486, 610
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 447, 448
SduI GDGCHC 1 cut(s) 451
SetI ASST 8 cut(s) 329, 394, 399, 460, 466, 487, 514, 563
SfaNI GCATC 2 cut(s) 209, 554
Sse9I AATT 7 cut(s) 36, 71, 90, 107, 192, 223, 251
SspMI CTAG 2 cut(s) 246, 402
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 454, 490
TasI AATT 7 cut(s) 36, 71, 90, 107, 192, 223, 251
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 2 cut(s) 317, 584
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TseI GCWGC 2 cut(s) 485, 609
TspDTI ATGAA 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 271
XapI RAATTY 2 cut(s) 36, 192
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 2 cut(s) 246, 402
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.