Rorug03G0132500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000085
Physical Location & Seq
Reverse (-)
10733565 .. 10740130
6566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0132500.1

Sequence Viewer

Length: 948 bp
ATGGCGGACGATATTCGTTTCTTTGAGTTGAGCACCGGAGCCAAGATGCCTTCTTTGGGCTTAGGGACCTGGCAGTCCAGCCCCGGCTTGGTCGGTGACGCCGTCGCCGCCGCCATCAAGGCAGGATATCGGCATATTGATTGTGCCCCAGTCTATGGCAATGAGAAGGAGATTGGTTTAGTTTTGAAGAAGCTGTTTGAAGATGGTGTGGTGAAGCGCGAGGAGTTGTGGATTACCTCCAAACTAGCGTCTACTGATCATGCACCAGAAGATGTACCGGATGCATTGGATAGGACTTTGAGAGACTTGCAGCTTGATTATGTTGACTTGTACCTGATCCACGGGCCAGTGCGGATGAAGAAGGATTCAGTAGGTTTTGGGCCTGAAAACCTTATACAACCAGATATCCCTGCCACATGGAGAGCAATGGAAACTCTCTATGATTCGTGCAAGGCTCGAGCTATTGGTGTGAGCAATTTCGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGAGTTCCTCCTGCTGTTAACCAAGTGGAGTGCCATCCTTCATGGCAGCAGGCCAAGCTACGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCGCTGGGTTCTCCTGGCACAACATTTATCAAAGGCGATGTCCTTAAGAATCCGATTCTTCTCAGCGTGGCAGAGAAGCTAGGCAAGACTCCTGCACAGATTGCTCTTCGATGGGGACTGCAAATGGGTCATAGTGTTCTTCCAAAGAGTAGTAATGAAGCAAGGATCAAGGAGAATCTTGATGTCTTTGGCTGGTCTATCCCAGAAGACTTGTTTGCCAAATTTTCTGAAATTGAGCAGGAAAGGCTATTCGATGGGACCATTTTTGTACATGACACTTTTGGACCCTATAGAAGTGTGGATGAATTCTGGGATGGTGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

315

Amino Acids

34.86

Weight (kDa)

5.58

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 285 6e-50 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 155
AccI GTMKAC 1 cut(s) 251
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 5, 108, 111, 352, 623
AclWI GGATC 3 cut(s) 331, 573, 794
AcsI RAATTY 2 cut(s) 842, 926
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 3 cut(s) 276, 332, 891
AfiI CCNNNNNNNGG 3 cut(s) 56, 88, 155
AflII CTTAAG 1 cut(s) 665
AgsI TTSAA 2 cut(s) 187, 200
AjnI CCWGG 2 cut(s) 68, 634
AluBI AGCT 6 cut(s) 193, 313, 461, 493, 574, 700
AluI AGCT 6 cut(s) 193, 313, 461, 493, 574, 700
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 3 cut(s) 331, 573, 794
Ama87I CYCGRG 1 cut(s) 456
AoxI GGCC 3 cut(s) 344, 380, 567
ApeKI GCWGC 2 cut(s) 310, 562
ApoI RAATTY 2 cut(s) 842, 926
ArsI GACNNNNNNTTYG 4 cut(s) 479, 511, 645, 677
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 5 cut(s) 66, 344, 380, 879, 905
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 107, 223, 596, 612
AvaI CYCGRG 1 cut(s) 456
AvaII GGWCC 3 cut(s) 66, 879, 905
BaeGI GKGCMC 1 cut(s) 148
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 322, 574
BccI CCATC 6 cut(s) 122, 197, 558, 726, 869, 929
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 567, 601
BciT130I CCWGG 2 cut(s) 70, 636
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 3 cut(s) 245, 701, 946
BfmI CTRYAG 1 cut(s) 910
BfrI CTTAAG 1 cut(s) 665
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 4 cut(s) 108, 111, 311, 563
BlsI GCNGC 4 cut(s) 109, 112, 312, 564
Bme1390I CCNGG 3 cut(s) 70, 84, 636
Bme18I GGWCC 3 cut(s) 66, 879, 905
BmeT110I CYCGRG 1 cut(s) 456
BmgT120I GGNCC 5 cut(s) 66, 344, 380, 879, 905
BmiI GGNNCC 4 cut(s) 40, 67, 880, 907
BmrFI CCNGG 3 cut(s) 70, 84, 636
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 36, 271
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 82, 340, 594
BsaWI WCCGGW 2 cut(s) 35, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 88, 155
Bse1I ACTGG 2 cut(s) 149, 347
Bse3DI GCAATG 2 cut(s) 166, 432
BseBI CCWGG 2 cut(s) 70, 636
BseDI CCNNGG 3 cut(s) 82, 340, 594
BseGI GGATG 6 cut(s) 286, 360, 514, 550, 928, 940
BseLI CCNNNNNNNGG 3 cut(s) 56, 88, 155
BseMI GCAATG 2 cut(s) 166, 432
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 2 cut(s) 149, 347
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 322, 574
BseYI CCCAGC 1 cut(s) 625
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 346, 382, 569
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 456
BsiSI CCGG 3 cut(s) 36, 84, 278
BslFI GGGAC 3 cut(s) 79, 750, 892
BslI CCNNNNNNNGG 3 cut(s) 56, 88, 155
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 3 cut(s) 79, 750, 892
BsnI GGCC 3 cut(s) 346, 382, 569
BsoBI CYCGRG 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 35, 148
Bsp1407I TGTACA 1 cut(s) 889
Bsp143I GATC 4 cut(s) 256, 336, 578, 786
BspACI CCGC 5 cut(s) 5, 108, 111, 352, 623
BspANI GGCC 3 cut(s) 346, 382, 569
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 4 cut(s) 40, 67, 880, 907
BspPI GGATC 3 cut(s) 331, 573, 794
BspQI GCTCTTC 1 cut(s) 732
BspTI CTTAAG 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 166, 432
BsrGI TGTACA 1 cut(s) 889
BsrI ACTGG 2 cut(s) 149, 347
BssECI CCNNGG 3 cut(s) 82, 340, 594
BssMI GATC 4 cut(s) 256, 336, 578, 786
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 70, 636
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 722
BstAUI TGTACA 1 cut(s) 889
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 61, 683
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 6 cut(s) 286, 360, 514, 550, 928, 940
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 4 cut(s) 259, 339, 581, 789
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 4 cut(s) 256, 336, 578, 786
BstMWI GCNNNNNNNGC 5 cut(s) 107, 119, 571, 722, 865
BstNI CCWGG 2 cut(s) 70, 636
BstSCI CCNGG 3 cut(s) 68, 82, 634
BstSFI CTRYAG 1 cut(s) 910
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 322, 574
BstV2I GAAGAC 1 cut(s) 834
BsuRI GGCC 3 cut(s) 346, 382, 569
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 6 cut(s) 286, 360, 514, 550, 928, 940
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 5 cut(s) 66, 344, 380, 879, 905
CseI GACGC 2 cut(s) 107, 237
Csp6I GTAC 3 cut(s) 275, 331, 890
CviAII CATG 4 cut(s) 260, 417, 558, 893
CviQI GTAC 3 cut(s) 275, 331, 890
DdeI CTNAG 2 cut(s) 61, 683
DpnI GATC 4 cut(s) 258, 338, 580, 788
DpnII GATC 4 cut(s) 256, 336, 578, 786
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 594
Eco32I GATATC 2 cut(s) 128, 406
Eco47I GGWCC 3 cut(s) 66, 879, 905
Eco88I CYCGRG 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 68, 634
EcoRV GATATC 2 cut(s) 128, 406
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 263, 420, 561, 896
FaqI GGGAC 3 cut(s) 79, 750, 892
FatI CATG 4 cut(s) 259, 416, 557, 892
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 108, 111, 311, 563
FokI GGATG 5 cut(s) 293, 367, 521, 537, 935
Fsp4HI GCNGC 4 cut(s) 108, 111, 311, 563
FspBI CTAG 3 cut(s) 245, 701, 946
GlaI GCGC 1 cut(s) 218
GluI GCNGC 4 cut(s) 108, 111, 311, 563
GsaI CCCAGC 1 cut(s) 629
HaeIII GGCC 3 cut(s) 346, 382, 569
HapII CCGG 3 cut(s) 36, 84, 278
HgaI GACGC 2 cut(s) 107, 237
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 4 cut(s) 263, 420, 561, 896
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 2 cut(s) 325, 535
HindII GTYRAC 2 cut(s) 325, 535
HinfI GANTC 6 cut(s) 365, 443, 670, 676, 709, 796
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 3 cut(s) 36, 84, 278
HphI GGTGA 4 cut(s) 107, 223, 596, 612
Hpy166II GTNNAC 4 cut(s) 252, 325, 535, 604
Hpy188I TCNGA 3 cut(s) 499, 675, 850
Hpy188III TCNNGA 2 cut(s) 612, 800
Hpy8I GTNNAC 4 cut(s) 252, 325, 535, 604
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 5 cut(s) 60, 160, 355, 564, 592
HpyCH4V TGCA 7 cut(s) 263, 284, 310, 450, 588, 716, 742
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 119, 571, 722, 865
HpyF3I CTNAG 2 cut(s) 61, 683
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 4 cut(s) 263, 420, 561, 896
HspAI GCGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 256
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 4 cut(s) 256, 336, 578, 786
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 2 cut(s) 322, 574
LweI GCATC 2 cut(s) 36, 271
MaeI CTAG 3 cut(s) 245, 701, 946
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 258, 338, 580, 788
MboI GATC 4 cut(s) 256, 336, 578, 786
MboII GAAGA 8 cut(s) 199, 212, 281, 370, 671, 719, 752, 839
MhlI GDGCHC 2 cut(s) 35, 148
MluCI AATT 4 cut(s) 475, 842, 852, 926
MlyI GAGTC 1 cut(s) 703
MnlI CCTC 3 cut(s) 214, 247, 534
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 2 cut(s) 534, 666
MspA1I CMGCKG 1 cut(s) 625
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 3 cut(s) 36, 84, 278
MspR9I CCNGG 3 cut(s) 70, 84, 636
MvaI CCWGG 2 cut(s) 70, 636
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 107, 119, 571, 722, 865
NciI CCSGG 1 cut(s) 84
NdeII GATC 4 cut(s) 256, 336, 578, 786
NlaIII CATG 4 cut(s) 263, 420, 561, 896
NlaIV GGNNCC 4 cut(s) 40, 67, 880, 907
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 5 cut(s) 365, 443, 670, 676, 796
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 4 cut(s) 109, 112, 312, 564
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PpuMI RGGWCCY 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 68, 634
PspFI CCCAGC 1 cut(s) 625
PspGI CCWGG 2 cut(s) 68, 634
PspN4I GGNNCC 4 cut(s) 40, 67, 880, 907
PspPI GGNCC 5 cut(s) 66, 344, 380, 879, 905
PspPPI RGGWCCY 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 456
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 3 cut(s) 276, 332, 891
RsaNI GTAC 3 cut(s) 275, 331, 890
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 2 cut(s) 534, 666
SatI GCNGC 4 cut(s) 108, 111, 311, 563
Sau3AI GATC 4 cut(s) 256, 336, 578, 786
Sau96I GGNCC 5 cut(s) 66, 344, 380, 879, 905
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 70, 84, 636
SduI GDGCHC 2 cut(s) 35, 148
SfaNI GCATC 2 cut(s) 36, 271
SfcI CTRYAG 1 cut(s) 910
Sfr274I CTCGAG 1 cut(s) 456
SinI GGWCC 3 cut(s) 66, 879, 905
SlaI CTCGAG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 456, 665
SmoI CTYRAG 2 cut(s) 456, 665
Sse9I AATT 4 cut(s) 475, 842, 852, 926
SsiI CCGC 5 cut(s) 5, 108, 111, 352, 623
SspMI CTAG 3 cut(s) 245, 701, 946
StyD4I CCNGG 3 cut(s) 68, 82, 634
StyI CCWWGG 1 cut(s) 594
TaqI TCGA 3 cut(s) 457, 730, 873
TasI AATT 4 cut(s) 475, 842, 852, 926
TatI WGTACW 1 cut(s) 889
TauI GCSGC 2 cut(s) 110, 113
TfiI GAWTC 5 cut(s) 365, 443, 670, 676, 796
Tru1I TTAA 2 cut(s) 534, 666
Tru9I TTAA 2 cut(s) 534, 666
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 310, 562
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 371, 546, 792, 939
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 3 cut(s) 66, 879, 905
XapI RAATTY 2 cut(s) 842, 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 456
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 3 cut(s) 245, 701, 946
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.