Rmu_sc0011921.1_g000006

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011921.1
OG0000085
Physical Location & Seq
Forward (+)
19630 .. 23141
3512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011921.1_g000006.1.cds

Sequence Viewer

Length: 3420 bp
atggcctcaagcagccaaacatcatcctcatctcgtccttcatcatctgctcctcggaggaagtacgatgtttttctgagtttccggggtgaagatactcgcaggactattattccctttatacaccgagaattgcaaaacagagaaattgaaacattcatggatgacacagggcttagcagagggacgtctattgctccaagtctgctaacagcaatccaagaatccaggtcagcgatcgttgttctctcaccaaactatgcgtattctagatggtgtttggacgaattgacaatgatcattcagtgcatggaagataagagcacaactgtcatcccaatcttttattatgtggatccctctgatgtgcggcatcagaaagggagttttgcaagagccttcactgagcaccaagaaaggctcgcgcaagacgatgagtacccaaataagttgaaccagtggagagttgctttaacaaaagttgcaggtctctctggcttggaatcaaacaaatatagttctgacttagaacttgtcaaaggcattgtggaaaccgtgtgcggtaaactacgacctattgatgctgagtgggcattgtcgtctactggagattttgtagcatttgaagcaacaagacaagccatggacaaggtaatgagggcacttcaagatgatgagatcactgccattggggtcgttggtatgggaggcgtgggcaagacaagtatggtgaaacgtgtcagtgcacaagcccggaaaattgggctctttaatcatgtgattatggctgtcgtatcccaaacacctaatttgagaaatattcaaggcacactggccgatttgctgggactaaaattgttggaggagacagaatttggaagagcggttagattgatggagaaaatagtgaaaggaaatcggatccttataatcttggacgacatttgggagagaatagatttgtctactattggaataccgagccatgatgagcgtcaaaagtgcagttccaaaatcttattcactacaaggagattgaatgtttgccattcgatggagagccaagcaagcattcctctcccagtcctatcagaagatgatgcttggaacctgtttgtgaaaaaagcaagaaagtcttttcatgaatcaaccagcttctatgatgtagcgaggacggtagctaaagaatgtgctggtctcccagttgcattgatagcagttgcaagggcacttggagataaagacttagacgattggacggaagcagctcgacgactaaaggctgctcaacctgtcaactacgaagatgagagagatgtgttcagatgtataaagttaagctatgattacttgagacctgatgataacaacattgccaagtcattcttcttgctttgctgtctattccctgaagattttgatatcgaggtagaagacttgttggtgtatgggattggaaaaggattatttcaagatgctgacacaatcaaagaagccagagccaaagcccatttggtggtaaagtacttgaaagcttctagcttgcttttggacagtgaatacagcggatttgtgaggatgcacgatgtcattcgagatgtggccatatcaatttcatcatcggatggtggcccacggtttttggttaaagctggttgtaagttaaagaattggccagcaattaatgttgcacatgaagactactctgcaatatcgctaatgaggaatgaaatttacaagcttcctgaaaagttggtatgttcaaaactccaggttttattgctacaaagtaatgataatatagatgatatcccaatccctttttttcaaagtcccaatgaattgagggtcttagatcttagtgagactggtatttcgctactaccctcatcattaagtctcctaaccaaccttaaggctttgtatctagatgattgcaagagaatagttaaaatctccatactcggaaagctgaaaaaccttcagattctcagtatgaagaaccttggaggaattcgtcataaacaattgccgaaagaaattgggtgcttgaccagtctaaagaagttggatatcaccaatgcatgttttgaaacagttccatctggagtgatatcaaatttgagtggattagaagaattgtacatgaaatgtgacttttgcaactggggtagaagtatagttggtggcttattttcttttgcttttggcaagaatgcttgctttgatgagctaacaggcttatcacgtttaaacagtttgcaagttcacatatctgatgtaaaatgcttgccccgaaaagttagattcaatccgaattgggtcaactttaatgtatgtatctgcagaaaagattttatgaaccagtcctattacggacgcttttttgagaggaaacaaactgtcaagttggatccacgtcaacttctctttcggtatgtgactctgaacacaagcacgaagagtttaccagattggtttatcaatgccgtgacagagaaagcagagatactggagtacatagggtacggtggcttagagaacccatttggacatttggacattctggaggaatacgaccttgggagattacatgtactgcagtgtcttgctgtaattgagtgcggtacagctggagagttgatgaacttaggaagaaggttgcgaaataaacctgtgtttgagagcttgatagaattgtatctggaaggagtccatggcctgtggcagttatgtaatggtgagttaccgcctgggtctctgtgcaatcttaagttgttaaatgtgagaaattgcccggaattgtggggggcacttttagaatcacatttgttgcagacgctaccaaaactggaaagactacattgcgagaacacggaggatgcgagagaaaccaaaatggaatatgtgtttggatttggatggctggagccagaacgaattgtcttaccaaaactgagagagataacattatgtcatcttgtgaacctcagaagcatatgcaatggtcatcctcctaatggagccttccgtaatcttaacagtctggcaattcggggctgccgcaaactgaaatatctgttcgaggacaatgcagctcaatctcttttccaattggaactcctttgggtggaggagtgctctgacctggaaacggttattgaatcaagacaggaaacagagatcaacaacctagtttttccaaaattgaaggaaatatatttaaatagtcttccacatctcacaaggatctacagacaaaagaaggttgtgtgcccttcattggaacagttgtacgtgtacagttgtcccggacttgcaaaccttgctgcttctgacttccaaagcaagaaccacgtccaagccaataatgaaggacattttgcaatcatatttgaacggtatgatcctatgtcataa

Protein Analysis

1139

Amino Acids

128.85

Weight (kDa)

6.56

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AatII GACGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 476
AccB7I CCANNNNNTGG 2 cut(s) 1054, 1516
AccBSI CCGCTC 1 cut(s) 884
AccI GTMKAC 2 cut(s) 602, 965
AccII CGCG 1 cut(s) 425
AciI CCGC 7 cut(s) 370, 561, 884, 1566, 2625, 2750, 3064
AclWI GGATC 8 cut(s) 350, 363, 916, 929, 2408, 2421, 3257, 3401
AcoI YGGCCR 3 cut(s) 834, 1602, 1673
AcsI RAATTY 4 cut(s) 872, 1731, 2013, 2119
AcuI CTGAAG 2 cut(s) 1431, 1967
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 6 cut(s) 1054, 1516, 3020, 3130, 3154, 3283
AflII CTTAAG 2 cut(s) 1913, 2771
AflIII ACRYGT 3 cut(s) 736, 2593, 3297
AjiI CACGTC 2 cut(s) 2420, 3358
AjnI CCWGG 4 cut(s) 227, 1770, 2752, 3147
Alw21I GWGCWC 4 cut(s) 326, 411, 748, 3143
Alw26I GTCTC 7 cut(s) 494, 860, 1202, 1348, 1859, 1904, 2763
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 8 cut(s) 350, 363, 916, 929, 2408, 2421, 3257, 3401
AoxI GGCC 6 cut(s) 3, 834, 1602, 1630, 1673, 2719
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 6 cut(s) 12, 1265, 1283, 3060, 3095, 3329
ApoI RAATTY 4 cut(s) 872, 1731, 2013, 2119
ArsI GACNNNNNNTTYG 2 cut(s) 1858, 1890
AseI ATTAAT 1 cut(s) 1683
Asp700I GAANNNNTTC 1 cut(s) 2097
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 1631
AsuC2I CCSGG 4 cut(s) 86, 754, 2798, 3312
AsuHPI GGTGA 5 cut(s) 101, 243, 742, 2068, 2753
BaeGI GKGCMC 5 cut(s) 664, 748, 1231, 2815, 3278
BaeI ACNNNNGTAYC 2 cut(s) 2501, 2534
BalI TGGCCA 2 cut(s) 1604, 1675
BamHI GGATCC 3 cut(s) 355, 921, 2413
BanII GRGCYC 1 cut(s) 768
BbsI GAAGAC 3 cut(s) 1440, 1704, 3224
Bbv12I GWGCWC 4 cut(s) 326, 411, 748, 3143
BbvI GCAGC 6 cut(s) 24, 1270, 1277, 3047, 3107, 3316
BccI CCATC 6 cut(s) 267, 889, 1048, 1619, 2110, 2916
BceAI ACGGC 1 cut(s) 2474
BcgI CGANNNNNNTGC 2 cut(s) 3074, 3108
BciT130I CCWGG 4 cut(s) 229, 1772, 2754, 3149
BciVI GTATCC 1 cut(s) 805
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 4 cut(s) 86, 754, 2798, 3312
BcoDI GTCTC 7 cut(s) 494, 860, 1202, 1348, 1859, 1904, 2763
BfaI CTAG 4 cut(s) 270, 1539, 1928, 3194
BfmI CTRYAG 3 cut(s) 2344, 2600, 3253
BfrI CTTAAG 2 cut(s) 1913, 2771
BfuAI ACCTGC 1 cut(s) 476
BfuI GTATCC 1 cut(s) 805
BglII AGATCT 1 cut(s) 1855
BisI GCNGC 8 cut(s) 13, 371, 1266, 1284, 3061, 3064, 3096, 3330
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 8 cut(s) 14, 372, 1267, 1285, 3062, 3065, 3097, 3331
BmcAI AGTACT 1 cut(s) 1526
Bme1390I CCNGG 8 cut(s) 86, 229, 754, 1772, 2754, 2798, 3149, 3312
BmgBI CACGTC 2 cut(s) 2420, 3358
BmgT120I GGNCC 1 cut(s) 1631
BmiI GGNNCC 6 cut(s) 357, 923, 1109, 2415, 2931, 3025
BmrFI CCNGG 8 cut(s) 86, 229, 754, 1772, 2754, 2798, 3149, 3312
BmrI ACTGGG 3 cut(s) 1076, 1196, 2176
BmsI GCATC 6 cut(s) 382, 571, 1090, 1465, 1569, 2872
BmuI ACTGGG 3 cut(s) 1076, 1196, 2176
BpiI GAAGAC 3 cut(s) 1440, 1704, 3224
BplI GAGNNNNNCTC 2 cut(s) 3125, 3157
BpmI CTGGAG 7 cut(s) 627, 1754, 2127, 2534, 2588, 2655, 2948
Bpu1102I GCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 1372
BpuMI CCSGG 4 cut(s) 86, 754, 2798, 3312
BsaAI YACGTR 1 cut(s) 3298
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 4 cut(s) 494, 1202, 1348, 2763
BsaJI CCNNGG 8 cut(s) 53, 85, 642, 1634, 2005, 2581, 2716, 2753
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 6 cut(s) 1054, 1516, 3020, 3130, 3154, 3283
Bse3DI GCAATG 3 cut(s) 1371, 2863, 3010
BseBI CCWGG 4 cut(s) 229, 1772, 2754, 3149
BseDI CCNNGG 8 cut(s) 53, 85, 642, 1634, 2005, 2581, 2716, 2753
BseGI GGATG 8 cut(s) 23, 169, 333, 1584, 1630, 2887, 2927, 3010
BseLI CCNNNNNNNGG 6 cut(s) 1054, 1516, 3020, 3130, 3154, 3283
BseMI GCAATG 3 cut(s) 1371, 2863, 3010
BseMII CTCAG 6 cut(s) 68, 396, 576, 2005, 2948, 3004
BseRI GAGGAG 3 cut(s) 42, 878, 3149
BseSI GKGCMC 5 cut(s) 664, 748, 1231, 2815, 3278
BseXI GCAGC 6 cut(s) 24, 1270, 1277, 3047, 3107, 3316
BseYI CCCAGC 1 cut(s) 844
BsgI GTGCAG 1 cut(s) 1024
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 6 cut(s) 5, 836, 1604, 1632, 1675, 2721
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 4 cut(s) 326, 411, 748, 3143
BsiSI CCGG 4 cut(s) 85, 754, 2798, 3312
BslFI GGGAC 4 cut(s) 199, 861, 1818, 3294
BslI CCNNNNNNNGG 6 cut(s) 1054, 1516, 3020, 3130, 3154, 3283
BsmAI GTCTC 7 cut(s) 494, 860, 1202, 1348, 1859, 1904, 2763
BsmFI GGGAC 4 cut(s) 199, 861, 1818, 3294
BsmI GAATGC 2 cut(s) 1071, 2221
BsnI GGCC 6 cut(s) 5, 836, 1604, 1632, 1675, 2721
Bso31I GGTCTC 4 cut(s) 494, 1202, 1348, 2763
Bsp1286I GDGCHC 9 cut(s) 326, 411, 664, 748, 768, 1231, 2815, 3143, 3278
Bsp1407I TGTACA 2 cut(s) 2142, 3300
Bsp1720I GCTNAGC 1 cut(s) 176
Bsp19I CCATGG 2 cut(s) 642, 2716
BspACI CCGC 7 cut(s) 370, 561, 884, 1566, 2625, 2750, 3064
BspANI GGCC 6 cut(s) 5, 836, 1604, 1632, 1675, 2721
BspCNI CTCAG 6 cut(s) 69, 397, 577, 2004, 2949, 3003
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 6 cut(s) 357, 923, 1109, 2415, 2931, 3025
BspMAI CTGCAG 2 cut(s) 2348, 2604
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 8 cut(s) 350, 363, 916, 929, 2408, 2421, 3257, 3401
BspQI GCTCTTC 1 cut(s) 874
BspTI CTTAAG 2 cut(s) 1913, 2771
BspTNI GGTCTC 4 cut(s) 494, 1202, 1348, 2763
BsrBI CCGCTC 1 cut(s) 884
BsrDI GCAATG 3 cut(s) 1371, 2863, 3010
BsrGI TGTACA 2 cut(s) 2142, 3300
BssECI CCNNGG 8 cut(s) 53, 85, 642, 1634, 2005, 2581, 2716, 2753
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 4 cut(s) 642, 2005, 2581, 2716
Bst2UI CCWGG 4 cut(s) 229, 1772, 2754, 3149
Bst6I CTCTTC 2 cut(s) 874, 2456
BstACI GRCGYC 1 cut(s) 188
BstAFI CTTAAG 2 cut(s) 1913, 2771
BstAPI GCANNNNNTGC 1 cut(s) 3326
BstAUI TGTACA 2 cut(s) 2142, 3300
BstBAI YACGTR 1 cut(s) 3298
BstC8I GCNNGC 6 cut(s) 423, 1069, 1544, 1677, 2221, 2291
BstDSI CCRYGG 3 cut(s) 642, 1634, 2716
BstF5I GGATG 8 cut(s) 23, 169, 333, 1584, 1630, 2887, 2927, 3010
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 427
BstMAI GTCTC 7 cut(s) 494, 860, 1202, 1348, 1859, 1904, 2763
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 5 cut(s) 590, 626, 1068, 1214, 3326
BstNI CCWGG 4 cut(s) 229, 1772, 2754, 3149
BstNSI RCATGY 2 cut(s) 2088, 2597
BstSCI CCNGG 8 cut(s) 84, 227, 752, 1770, 2752, 2796, 3147, 3310
BstSFI CTRYAG 3 cut(s) 2344, 2600, 3253
BstSLI GKGCMC 5 cut(s) 664, 748, 1231, 2815, 3278
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 6 cut(s) 24, 1270, 1277, 3047, 3107, 3316
BstV2I GAAGAC 3 cut(s) 1440, 1704, 3224
BstX2I RGATCY 5 cut(s) 355, 921, 1855, 2413, 3249
BstYI RGATCY 5 cut(s) 355, 921, 1855, 2413, 3249
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 6 cut(s) 5, 836, 1604, 1632, 1675, 2721
BtgI CCRYGG 3 cut(s) 642, 1634, 2716
BtrI CACGTC 2 cut(s) 2420, 3358
BtsCI GGATG 8 cut(s) 23, 169, 333, 1584, 1630, 2887, 2927, 3010
BtsI GCAGTG 2 cut(s) 681, 2609
BtsIMutI CAGTG 8 cut(s) 311, 402, 464, 681, 748, 830, 1561, 2609
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 6 cut(s) 423, 1069, 1544, 1677, 2221, 2291
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 1631
CseI GACGC 3 cut(s) 983, 2388, 2848
CspCI CAANNNNNGTGG 2 cut(s) 1623, 1658
DraI TTTAAA 2 cut(s) 2253, 3225
EaeI YGGCCR 3 cut(s) 834, 1602, 1673
Eam1104I CTCTTC 2 cut(s) 874, 2456
EarI CTCTTC 2 cut(s) 874, 2456
Eco130I CCWWGG 4 cut(s) 642, 2005, 2581, 2716
Eco24I GRGCYC 1 cut(s) 768
Eco31I GGTCTC 4 cut(s) 494, 1202, 1348, 2763
Eco32I GATATC 4 cut(s) 1423, 1810, 2074, 2115
Eco57I CTGAAG 2 cut(s) 1431, 1967
EcoRI GAATTC 1 cut(s) 2013
EcoRII CCWGG 4 cut(s) 227, 1770, 2752, 3147
EcoRV GATATC 4 cut(s) 1423, 1810, 2074, 2115
EcoT14I CCWWGG 4 cut(s) 642, 2005, 2581, 2716
EcoT22I ATGCAT 1 cut(s) 2086
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 4 cut(s) 642, 2005, 2581, 2716
FalI AAGNNNNNCTT 4 cut(s) 1120, 1152, 1370, 1402
FaqI GGGAC 4 cut(s) 199, 861, 1818, 3294
FauNDI CATATG 1 cut(s) 2999
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 2 cut(s) 602, 965
Fnu4HI GCNGC 8 cut(s) 13, 371, 1266, 1284, 3061, 3064, 3096, 3330
FokI GGATG 8 cut(s) 10, 176, 320, 1591, 1637, 2894, 2934, 2997
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 8 cut(s) 13, 371, 1266, 1284, 3061, 3064, 3096, 3330
FspBI CTAG 4 cut(s) 270, 1539, 1928, 3194
GlaI GCGC 1 cut(s) 426
GluI GCNGC 8 cut(s) 13, 371, 1266, 1284, 3061, 3064, 3096, 3330
GsaI CCCAGC 1 cut(s) 848
GsuI CTGGAG 7 cut(s) 627, 1754, 2127, 2534, 2588, 2655, 2948
HaeIII GGCC 6 cut(s) 5, 836, 1604, 1632, 1675, 2721
HapII CCGG 4 cut(s) 85, 754, 2798, 3312
HgaI GACGC 3 cut(s) 983, 2388, 2848
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 3 cut(s) 1297, 2326, 2423
HindII GTYRAC 3 cut(s) 1297, 2326, 2423
HindIII AAGCTT 2 cut(s) 1533, 1739
HinfI GANTC 9 cut(s) 224, 503, 1145, 1987, 2307, 2443, 2712, 2822, 3164
HpaII CCGG 4 cut(s) 85, 754, 2798, 3312
HphI GGTGA 5 cut(s) 101, 243, 742, 2068, 2753
Hpy99I CGWCG 1 cut(s) 1275
HpyCH4IV ACGT 6 cut(s) 188, 736, 2248, 2419, 3297, 3357
HpyF10VI GCNNNNNNNGC 5 cut(s) 590, 626, 1068, 1214, 3326
HpySE526I ACGT 6 cut(s) 188, 736, 2248, 2419, 3297, 3357
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 297
LguI GCTCTTC 1 cut(s) 874
LmnI GCTCC 4 cut(s) 55, 202, 2929, 3023
Lsp1109I GCAGC 6 cut(s) 24, 1270, 1277, 3047, 3107, 3316
LweI GCATC 6 cut(s) 382, 571, 1090, 1465, 1569, 2872
MaeI CTAG 4 cut(s) 270, 1539, 1928, 3194
MaeII ACGT 6 cut(s) 188, 736, 2248, 2419, 3297, 3357
MaeIII GTNAC 4 cut(s) 2153, 2440, 2491, 2745
MbiI CCGCTC 1 cut(s) 884
MfeI CAATTG 2 cut(s) 2027, 3113
MflI RGATCY 5 cut(s) 355, 921, 1855, 2413, 3249
MhlI GDGCHC 9 cut(s) 326, 411, 664, 748, 768, 1231, 2815, 3143, 3278
MlsI TGGCCA 2 cut(s) 1604, 1675
MluNI TGGCCA 2 cut(s) 1604, 1675
MlyI GAGTC 2 cut(s) 2437, 2721
MmeI TCCRAC 3 cut(s) 840, 2049, 2391
Mox20I TGGCCA 2 cut(s) 1604, 1675
Mph1103I ATGCAT 1 cut(s) 2086
MroXI GAANNNNTTC 1 cut(s) 2097
MscI TGGCCA 2 cut(s) 1604, 1675
Msp20I TGGCCA 2 cut(s) 1604, 1675
MspA1I CMGCKG 2 cut(s) 1566, 2633
MspCI CTTAAG 2 cut(s) 1913, 2771
MspI CCGG 4 cut(s) 85, 754, 2798, 3312
MspR9I CCNGG 8 cut(s) 86, 229, 754, 1772, 2754, 2798, 3149, 3312
MssI GTTTAAAC 1 cut(s) 2253
MunI CAATTG 2 cut(s) 2027, 3113
Mva1269I GAATGC 2 cut(s) 1071, 2221
MvaI CCWGG 4 cut(s) 229, 1772, 2754, 3149
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 5 cut(s) 590, 626, 1068, 1214, 3326
NciI CCSGG 4 cut(s) 86, 754, 2798, 3312
NcoI CCATGG 2 cut(s) 642, 2716
NdeI CATATG 1 cut(s) 2999
NlaIV GGNNCC 6 cut(s) 357, 923, 1109, 2415, 2931, 3025
NmuCI GTSAC 3 cut(s) 2153, 2440, 2491
NsiI ATGCAT 1 cut(s) 2086
NspI RCATGY 2 cut(s) 2088, 2597
PagI TCATGA 1 cut(s) 1141
PciI ACATGT 1 cut(s) 2593
PciSI GCTCTTC 1 cut(s) 874
PcsI WCGNNNNNNNCGW 2 cut(s) 429, 2882
PctI GAATGC 2 cut(s) 1071, 2221
PdmI GAANNNNTTC 1 cut(s) 2097
PfeI GAWTC 7 cut(s) 224, 503, 1145, 1987, 2307, 2822, 3164
PflMI CCANNNNNTGG 2 cut(s) 1054, 1516
PfoI TCCNGGA 1 cut(s) 3310
PkrI GCNGC 8 cut(s) 14, 372, 1267, 1285, 3062, 3065, 3097, 3331
Ple19I CGATCG 1 cut(s) 240
PleI GAGTC 2 cut(s) 2437, 2720
PmeI GTTTAAAC 1 cut(s) 2253
PpsI GAGTC 2 cut(s) 2437, 2720
Ppu21I YACGTR 1 cut(s) 3298
PscI ACATGT 1 cut(s) 2593
PshBI ATTAAT 1 cut(s) 1683
PsiI TTATAA 1 cut(s) 929
Psp6I CCWGG 4 cut(s) 227, 1770, 2752, 3147
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 4 cut(s) 227, 1770, 2752, 3147
PspN4I GGNNCC 6 cut(s) 357, 923, 1109, 2415, 2931, 3025
PspPI GGNCC 1 cut(s) 1631
PstI CTGCAG 2 cut(s) 2348, 2604
PsuI RGATCY 5 cut(s) 355, 921, 1855, 2413, 3249
PvuI CGATCG 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 2633
SapI GCTCTTC 1 cut(s) 874
SatI GCNGC 8 cut(s) 13, 371, 1266, 1284, 3061, 3064, 3096, 3330
Sau96I GGNCC 1 cut(s) 1631
ScaI AGTACT 1 cut(s) 1526
SchI GAGTC 2 cut(s) 2437, 2721
ScrFI CCNGG 8 cut(s) 86, 229, 754, 1772, 2754, 2798, 3149, 3312
SduI GDGCHC 9 cut(s) 326, 411, 664, 748, 768, 1231, 2815, 3143, 3278
SfaNI GCATC 6 cut(s) 382, 571, 1090, 1465, 1569, 2872
SfcI CTRYAG 3 cut(s) 2344, 2600, 3253
SmiI ATTTAAAT 1 cut(s) 3225
SmlI CTYRAG 4 cut(s) 7, 1351, 1913, 2771
SmoI CTYRAG 4 cut(s) 7, 1351, 1913, 2771
SsiI CCGC 7 cut(s) 370, 561, 884, 1566, 2625, 2750, 3064
SspI AATATT 1 cut(s) 820
SspMI CTAG 4 cut(s) 270, 1539, 1928, 3194
StyD4I CCNGG 8 cut(s) 84, 227, 752, 1770, 2752, 2796, 3147, 3310
StyI CCWWGG 4 cut(s) 642, 2005, 2581, 2716
SwaI ATTTAAAT 1 cut(s) 3225
TaiI ACGT 6 cut(s) 191, 739, 2251, 2422, 3300, 3360
TaqI TCGA 5 cut(s) 1052, 1270, 1425, 1594, 3084
TatI WGTACW 5 cut(s) 1524, 2142, 2517, 2596, 3300
TauI GCSGC 2 cut(s) 373, 3066
TfiI GAWTC 7 cut(s) 224, 503, 1145, 1987, 2307, 2822, 3164
TscAI CASTG 8 cut(s) 311, 409, 464, 688, 748, 837, 1561, 2609
TseFI GTSAC 3 cut(s) 2153, 2440, 2491
TseI GCWGC 6 cut(s) 12, 1265, 1283, 3060, 3095, 3329
Tsp45I GTSAC 3 cut(s) 2153, 2440, 2491
TspGWI ACGGA 4 cut(s) 1274, 2391, 2891, 3020
TspRI CASTG 8 cut(s) 311, 409, 464, 688, 748, 837, 1561, 2609
Van91I CCANNNNNTGG 2 cut(s) 1054, 1516
Vha464I CTTAAG 2 cut(s) 1913, 2771
VneI GTGCAC 1 cut(s) 744
VspI ATTAAT 1 cut(s) 1683
XapI RAATTY 4 cut(s) 872, 1731, 2013, 2119
XbaI TCTAGA 2 cut(s) 269, 1927
XceI RCATGY 2 cut(s) 2088, 2597
XcmI CCANNNNNNNNNTGG 1 cut(s) 1510
XmiI GTMKAC 2 cut(s) 602, 965
XmnI GAANNNNTTC 1 cut(s) 2097
XspI CTAG 4 cut(s) 270, 1539, 1928, 3194
ZraI GACGTC 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 1526
Zsp2I ATGCAT 1 cut(s) 2086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.