Rorug05G0399200

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000085
Physical Location & Seq
Reverse (-)
54870652 .. 54877136
6485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0399200.1

Sequence Viewer

Length: 2529 bp
ATGGCTATTGCTGGTCTACAAAATGTTTCTGTGCTCGAGTCTTCTTTCCTTAGAAGCTCTCAATCTGGTGCATCTAGAAGGGTAGACAATGAAGGGAGGGCACACTCCCGGGCTTCCTCTCTGCTACAAATGTGGCGAGAGCTTGAGGATGAGCATATGGTGACTCGTCCCCTCGAGAGAGTTGGTGAAAGGTTGTTCCAACAAAGGAGTGATGGAGTTGGTAGCGAGAATACAGGTGACCTGGATGATGCGAGTGTGGGTGAGAGTGAGTGCAGAACATGGTCCCAAGGTCAAATTGGCTCATCCCTTGAACATGATGAATATAGCAATTTTAGCAGTGAGCAGTCTTCTGATTTTGGGGAGGGTGAAAGGGGGAGGGTGAGACAAATTTTTCAGGAATGGATGAACTGTGGTGCGAGTGAATGTGCATCAAATGTTTCTCATATGAATAACACTTCAAGGGCAGAGTTGCTTGGTGAAACTGAACAGGAGAGAGTGAGAATTATAAGGGAGTGGGTACGAATGAACAGCCAGCAAAGAGTTGCTTCTGGTGACAATGGAGAAGAACAACCTGCTGAGTTTGGTAATCAAATTGCACGAGTTCGTGATGGATTGGTTGTTAACCAAAGTGGAGGCCGGTCTGAGCATAACCGGAGGGGAATTCGTAAATTATGTGGGAGACAAGCTCTACTGGATATGTTAAAGAAGGCTGAGAGGGAAAGGCAAATAGAACTTCAAGTCTTGTCGGAGCACCAGCCCGTAACACGCTTTGCTCACCGCAACCGCATTCAGTCATTGCTTCGAGGAAGATTTTTACGAAATGGTAGAGCCATTGAGAACGAGAGACCCATTTCGATGGCTGAAACTGAATTGGGCTTATTGAGGCAAAGACATACAGTCTCTGGTCTGAGGGATGGTTTTGACTCCAAATTGGATAGTCCTGTTGGTGGTCAAGTAGGCAGCTGCCATTCTGAGTCATCTTCAAGCAATTCTAATGGTATCAGAAGTGGCCATACTCAACCGAACAATTCACATGAAGTCGTTAGTGGTTCTTTTGAGCAGTCTGAGGCTAATGATGTTGCAAGTAATGACCGAGGACACAATAGTTGTGGAACATCAGCGGCTAGGGCTGATTTAGGTGGAAACACCATTCAGGATATAGATTCACATGAATCTAATGCTCCCATAGAACATGGGCAAGAAGAGATTCCTGATAATGTTGTAAGTGGCTGGCAATGCTCATCCTCTATTGAGATTGTTGAAAGTAGAGATGGTGCTTGTCAAAACATGATTGGGAACTTACTTACAACCACTGCTGTTGAGCAGTCCCAAGAAACTTTGCACAATGATGCTAATGACCACAGTAACATTCAAGGAGCCAGTGATTTATCTAATGAGCAATCTGAGCTTGATGGGGATGAAAGTGTCATCCACGAACTCAGTCATGCAGATGGCAATATGCTTGAGGATGTAAATTTTCAAGAGTCCAATTCACAGCCACACCAATGGCTGGATCAAGTTTCAGAAAATGAGGAAGGAGACCAGGTGCAAGCTGATGAGTATAATAGTTTGATAGAAAATGTCGTTGAACATACAGGTGAAGATCAGCAGGAAACTGCTGGTTATGAATGGTCCCAGGAGTTGGTAGAGAACGAAGATAGAGAAGATGATCAACTCCAAGAAGTCCCTGAAGTGTGGCACGATGAAAGTGGTTTTCAAGAGGCTGTTCAAAGTTGGTTAGAAGGGCCATCCAGCCAGGATTCCGATTCAGTCAGGCGGGCTGATACCTTTTACTTTCCTGATGATGATAATGCTCATAATACAGAGCTAAGGGAACTTCTAAGCAGGAGAAGGGTCTCTAATCTTCTGAGCAGTGGTTTCCGTCAGAACCTTGATCAACTCATACAGTCATACGTGGAAAGGCAAGGTCATGCCGCCATTGACTGGGATGAAGCATCAGCTTATCCTGAATTGACTGAAGATATGGAGCAGACATATCAGAATGAAGTTCAAGTGAATGCTGTTGAGAGTCCTCACCTTGCTCTACCACCGCAGCCAATACCTTCCTCTCCACTGTGGCACCAGGAGTCACCCCGTGATAATTGGCCACGACATGACATGCATCAGCGCTTTGGAATTGACTGGGAGATGGTGAACGATATGAGGATTGACATGGCTAGGCTGCAACAGAGGATGAACAACTTGCAAAGGATGTTGGAGGCCTGCATGGATATGCAACTCGAGTTGCAACGATCGATAAGACAAGAAGTTTCTGATGCCTTGAATCGGTCAGCCGGTTCACAAGGGGTGTGTGAAGATGGTCTCCTAGATGATGGGTCTAAATGGGATAATGTAAGGAAAGGAATTTGCTGTATATGTTGTGTTAGCAGTATTGATTCTTTACTGTACAGATGTGGTCACATGTGCACATGTTCAAAATGCGCTACCAAATTGGTTGAGAGTAGCGGAAAATGTCCGATGTGCAGAGCACCCGCAGTTGAGGTGATCCGGGCTTATTCTGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

842

Amino Acids

94.41

Weight (kDa)

4.69

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 788 - 832 7.5e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 506, 2527
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 2079
AccB7I CCANNNNNTGG 3 cut(s) 1510, 1642, 1944
AccI GTMKAC 2 cut(s) 16, 84
AciI CCGC 8 cut(s) 778, 784, 1121, 1777, 1935, 2051, 2466, 2493
AclWI GGATC 2 cut(s) 1521, 2500
AcoI YGGCCR 2 cut(s) 1009, 2105
AcsI RAATTY 4 cut(s) 387, 660, 1474, 2364
AcuI CTGAAG 2 cut(s) 1710, 1998
AdeI CACNNNGTG 1 cut(s) 2096
AfaI GTAC 2 cut(s) 519, 2408
AfeI AGCGCT 1 cut(s) 2129
AfiI CCNNNNNNNGG 5 cut(s) 947, 1510, 1642, 1944, 2286
AflIII ACRYGT 2 cut(s) 2421, 2429
AhdI GACNNNNNGTC 1 cut(s) 896
AjnI CCWGG 5 cut(s) 240, 1542, 1635, 1755, 2082
AluBI AGCT 8 cut(s) 57, 142, 686, 963, 1408, 1553, 1828, 1961
AluI AGCT 8 cut(s) 57, 142, 686, 963, 1408, 1553, 1828, 1961
Alw21I GWGCWC 4 cut(s) 36, 753, 2429, 2491
Alw26I GTCTC 7 cut(s) 376, 673, 838, 904, 1533, 1861, 2327
Alw44I GTGCAC 1 cut(s) 2425
AlwI GGATC 2 cut(s) 1521, 2500
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 4 cut(s) 35, 108, 173, 2240
Aor51HI AGCGCT 1 cut(s) 2129
AoxI GGCC 5 cut(s) 634, 1009, 1745, 2105, 2220
ApaLI GTGCAC 1 cut(s) 2425
ApeKI GCWGC 4 cut(s) 960, 963, 2053, 2182
ApoI RAATTY 4 cut(s) 387, 660, 1474, 2364
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 2 cut(s) 2130, 2444
AspS9I GGNCC 3 cut(s) 282, 1632, 1745
AsuC2I CCSGG 3 cut(s) 109, 110, 2510
AvaI CYCGRG 4 cut(s) 35, 108, 173, 2240
AvaII GGWCC 2 cut(s) 282, 1632
BaeGI GKGCMC 2 cut(s) 103, 2429
BalI TGGCCA 2 cut(s) 1011, 2107
BanI GGYRCC 1 cut(s) 2079
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 2 cut(s) 33, 339
Bbv12I GWGCWC 4 cut(s) 36, 753, 2429, 2491
BbvI GCAGC 4 cut(s) 950, 972, 2065, 2169
BciT130I CCWGG 5 cut(s) 242, 1544, 1637, 1757, 2084
BclI TGATCA 2 cut(s) 1669, 1894
BcnI CCSGG 3 cut(s) 109, 110, 2510
BcoDI GTCTC 7 cut(s) 376, 673, 838, 904, 1533, 1861, 2327
BfaI CTAG 4 cut(s) 75, 1125, 2178, 2327
BfoI RGCGCY 1 cut(s) 2131
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 6 cut(s) 961, 964, 1122, 1935, 2054, 2183
BlsI GCNGC 6 cut(s) 962, 965, 1123, 1936, 2055, 2184
Bme1390I CCNGG 8 cut(s) 109, 110, 242, 1544, 1637, 1757, 2084, 2510
Bme18I GGWCC 2 cut(s) 282, 1632
BmeRI GACNNNNNGTC 1 cut(s) 896
BmeT110I CYCGRG 4 cut(s) 35, 108, 173, 2240
BmgT120I GGNCC 3 cut(s) 282, 1632, 1745
BmiI GGNNCC 4 cut(s) 284, 1378, 1634, 2081
BmrFI CCNGG 8 cut(s) 109, 110, 242, 1544, 1637, 1757, 2084, 2510
BmrI ACTGGG 2 cut(s) 1954, 2152
BmsI GCATC 7 cut(s) 80, 238, 437, 1339, 1964, 2131, 2266
BmuI ACTGGG 2 cut(s) 1954, 2152
BpiI GAAGAC 2 cut(s) 33, 339
BplI GAGNNNNNCTC 2 cut(s) 670, 702
Bpu10I CCTNAGC 1 cut(s) 1829
BpuEI CTTGAG 2 cut(s) 164, 1484
BpuMI CCSGG 3 cut(s) 109, 110, 2510
Bsa29I ATCGAT 1 cut(s) 2255
BsaAI YACGTR 1 cut(s) 1915
BsaI GGTCTC 4 cut(s) 838, 1533, 1861, 2327
BsaJI CCNNGG 4 cut(s) 108, 286, 1093, 1635
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 1530, 1560
Bsc4I CCNNNNNNNGG 5 cut(s) 947, 1510, 1642, 1944, 2286
Bse118I RCCGGY 2 cut(s) 636, 2294
Bse1I ACTGG 4 cut(s) 696, 1380, 1949, 2147
Bse3DI GCAATG 2 cut(s) 794, 1241
BseBI CCWGG 5 cut(s) 242, 1544, 1637, 1757, 2084
BseCI ATCGAT 1 cut(s) 2255
BseDI CCNNGG 4 cut(s) 108, 286, 1093, 1635
BseLI CCNNNNNNNGG 5 cut(s) 947, 1510, 1642, 1944, 2286
BseMI GCAATG 2 cut(s) 794, 1241
BseMII CTCAG 9 cut(s) 567, 633, 702, 899, 963, 1056, 1395, 1453, 1859
BseNI ACTGG 4 cut(s) 696, 1380, 1949, 2147
BseSI GKGCMC 2 cut(s) 103, 2429
BseXI GCAGC 4 cut(s) 950, 972, 2065, 2169
BsgI GTGCAG 2 cut(s) 292, 2503
Bsh1285I CGRYCG 1 cut(s) 2255
BshFI GGCC 5 cut(s) 636, 1011, 1747, 2107, 2222
BshNI GGYRCC 1 cut(s) 2079
BshVI ATCGAT 1 cut(s) 2255
BsiEI CGRYCG 1 cut(s) 2255
BsiHKAI GWGCWC 4 cut(s) 36, 753, 2429, 2491
BsiHKCI CYCGRG 4 cut(s) 35, 108, 173, 2240
BsiSI CCGG 5 cut(s) 109, 637, 652, 2295, 2509
BslFI GGGAC 5 cut(s) 153, 268, 1312, 1618, 1670
BslI CCNNNNNNNGG 5 cut(s) 947, 1510, 1642, 1944, 2286
BsmAI GTCTC 7 cut(s) 376, 673, 838, 904, 1533, 1861, 2327
BsmFI GGGAC 5 cut(s) 153, 268, 1312, 1618, 1670
BsmI GAATGC 2 cut(s) 786, 2023
BsnI GGCC 5 cut(s) 636, 1011, 1747, 2107, 2222
Bso31I GGTCTC 4 cut(s) 838, 1533, 1861, 2327
BsoBI CYCGRG 4 cut(s) 35, 108, 173, 2240
Bsp1286I GDGCHC 5 cut(s) 36, 103, 753, 2429, 2491
Bsp1407I TGTACA 1 cut(s) 2406
Bsp143I GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
BspACI CCGC 8 cut(s) 778, 784, 1121, 1777, 1935, 2051, 2466, 2493
BspANI GGCC 5 cut(s) 636, 1011, 1747, 2107, 2222
BspCNI CTCAG 9 cut(s) 568, 634, 703, 900, 964, 1057, 1396, 1452, 1860
BspDI ATCGAT 1 cut(s) 2255
BspLI GGNNCC 4 cut(s) 284, 1378, 1634, 2081
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 1521, 2500
BspT107I GGYRCC 1 cut(s) 2079
BspTNI GGTCTC 4 cut(s) 838, 1533, 1861, 2327
BsrDI GCAATG 2 cut(s) 794, 1241
BsrFI RCCGGY 2 cut(s) 636, 2294
BsrGI TGTACA 1 cut(s) 2406
BsrI ACTGG 4 cut(s) 696, 1380, 1949, 2147
BssAI RCCGGY 2 cut(s) 636, 2294
BssECI CCNNGG 4 cut(s) 108, 286, 1093, 1635
BssMI GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 242, 1544, 1637, 1757, 2084
Bst4CI ACNGT 6 cut(s) 410, 898, 1364, 1908, 2076, 2406
Bst6I CTCTTC 1 cut(s) 1197
BstAUI TGTACA 1 cut(s) 2406
BstBAI YACGTR 1 cut(s) 1915
BstC8I GCNNGC 5 cut(s) 533, 1232, 1551, 1779, 2224
BstEII GGTNACC 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 2131
BstHHI GCGC 2 cut(s) 2130, 2444
BstKTI GATC 6 cut(s) 1516, 1606, 1672, 1897, 2255, 2508
BstMAI GTCTC 7 cut(s) 376, 673, 838, 904, 1533, 1861, 2327
BstMBI GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
BstMCI CGRYCG 1 cut(s) 2255
BstMWI GCNNNNNNNGC 4 cut(s) 333, 1127, 1236, 1405
BstNI CCWGG 5 cut(s) 242, 1544, 1637, 1757, 2084
BstNSI RCATGY 3 cut(s) 2122, 2425, 2433
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 8 cut(s) 107, 108, 240, 1542, 1635, 1755, 2082, 2508
BstSLI GKGCMC 2 cut(s) 103, 2429
BstV1I GCAGC 4 cut(s) 950, 972, 2065, 2169
BstV2I GAAGAC 2 cut(s) 33, 339
BstXI CCANNNNNNTGG 2 cut(s) 856, 1506
Bsu15I ATCGAT 1 cut(s) 2255
BsuRI GGCC 5 cut(s) 636, 1011, 1747, 2107, 2222
BsuTUI ATCGAT 1 cut(s) 2255
BtsI GCAGTG 3 cut(s) 343, 1311, 1879
BtsIMutI CAGTG 5 cut(s) 343, 1311, 1387, 1879, 2072
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 5 cut(s) 533, 1232, 1551, 1779, 2224
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 2 cut(s) 2130, 2444
Cfr10I RCCGGY 2 cut(s) 636, 2294
Cfr13I GGNCC 3 cut(s) 282, 1632, 1745
Cfr9I CCCGGG 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 2255
CsiI ACCWGGT 1 cut(s) 1542
Csp6I GTAC 2 cut(s) 518, 2407
CspCI CAANNNNNGTGG 4 cut(s) 1090, 1125, 1300, 1335
CviQI GTAC 2 cut(s) 518, 2407
DpnI GATC 6 cut(s) 1515, 1605, 1671, 1896, 2254, 2507
DpnII GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
DraIII CACNNNGTG 1 cut(s) 2096
DriI GACNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 2 cut(s) 1009, 2105
Eam1104I CTCTTC 1 cut(s) 1197
Eam1105I GACNNNNNGTC 1 cut(s) 896
EarI CTCTTC 1 cut(s) 1197
Eco130I CCWWGG 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 2222
Eco31I GGTCTC 4 cut(s) 838, 1533, 1861, 2327
Eco47I GGWCC 2 cut(s) 282, 1632
Eco47III AGCGCT 1 cut(s) 2129
Eco57I CTGAAG 2 cut(s) 1710, 1998
Eco88I CYCGRG 4 cut(s) 35, 108, 173, 2240
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 5 cut(s) 240, 1542, 1635, 1755, 2082
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 2124
ErhI CCWWGG 1 cut(s) 286
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 5 cut(s) 153, 268, 1312, 1618, 1670
FauI CCCGC 2 cut(s) 1770, 2500
FauNDI CATATG 2 cut(s) 156, 444
FbaI TGATCA 2 cut(s) 1669, 1894
FblI GTMKAC 2 cut(s) 16, 84
Fnu4HI GCNGC 6 cut(s) 961, 964, 1122, 1935, 2054, 2183
Fsp4HI GCNGC 6 cut(s) 961, 964, 1122, 1935, 2054, 2183
FspBI CTAG 4 cut(s) 75, 1125, 2178, 2327
GlaI GCGC 2 cut(s) 2129, 2443
GluI GCNGC 6 cut(s) 961, 964, 1122, 1935, 2054, 2183
HaeII RGCGCY 1 cut(s) 2131
HaeIII GGCC 5 cut(s) 636, 1011, 1747, 2107, 2222
HapII CCGG 5 cut(s) 109, 637, 652, 2295, 2509
HhaI GCGC 2 cut(s) 2130, 2444
Hin6I GCGC 2 cut(s) 2128, 2442
HinP1I GCGC 2 cut(s) 2128, 2442
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HpaI GTTAAC 1 cut(s) 622
HpaII CCGG 5 cut(s) 109, 637, 652, 2295, 2509
Hpy166II GTNNAC 6 cut(s) 17, 85, 622, 2155, 2300, 2427
Hpy8I GTNNAC 6 cut(s) 17, 85, 622, 2155, 2300, 2427
HpyAV CCTTC 7 cut(s) 72, 86, 700, 1529, 1736, 1845, 2073
HpyCH4III ACNGT 6 cut(s) 410, 898, 1364, 1908, 2076, 2406
HpyCH4IV ACGT 1 cut(s) 1914
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 1127, 1236, 1405
HpySE526I ACGT 1 cut(s) 1914
HspAI GCGC 2 cut(s) 2128, 2442
Ksp22I TGATCA 2 cut(s) 1669, 1894
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
LmnI GCTCC 4 cut(s) 748, 1186, 1376, 1987
Lsp1109I GCAGC 4 cut(s) 950, 972, 2065, 2169
LweI GCATC 7 cut(s) 80, 238, 437, 1339, 1964, 2131, 2266
MabI ACCWGGT 1 cut(s) 1542
MaeI CTAG 4 cut(s) 75, 1125, 2178, 2327
MaeII ACGT 1 cut(s) 1914
MaeIII GTNAC 7 cut(s) 160, 236, 551, 760, 1364, 2088, 2417
MalI GATC 6 cut(s) 1515, 1605, 1671, 1896, 2254, 2507
MboI GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
MhlI GDGCHC 5 cut(s) 36, 103, 753, 2429, 2491
MlsI TGGCCA 2 cut(s) 1011, 2107
MluNI TGGCCA 2 cut(s) 1011, 2107
MlyI GAGTC 7 cut(s) 47, 157, 917, 983, 1493, 2038, 2096
MmeI TCCRAC 3 cut(s) 223, 726, 2196
Mox20I TGGCCA 2 cut(s) 1011, 2107
Mph1103I ATGCAT 1 cut(s) 2124
MroXI GAANNNNTTC 1 cut(s) 1206
MscI TGGCCA 2 cut(s) 1011, 2107
MseI TTAA 2 cut(s) 621, 701
MslI CAYNNNNRTG 6 cut(s) 854, 1347, 1449, 1504, 1596, 2231
Msp20I TGGCCA 2 cut(s) 1011, 2107
MspA1I CMGCKG 2 cut(s) 963, 1121
MspI CCGG 5 cut(s) 109, 637, 652, 2295, 2509
MspR9I CCNGG 8 cut(s) 109, 110, 242, 1544, 1637, 1757, 2084, 2510
Mva1269I GAATGC 2 cut(s) 786, 2023
MvaI CCWGG 5 cut(s) 242, 1544, 1637, 1757, 2084
MwoI GCNNNNNNNGC 4 cut(s) 333, 1127, 1236, 1405
NciI CCSGG 3 cut(s) 109, 110, 2510
NdeI CATATG 2 cut(s) 156, 444
NdeII GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
NlaIV GGNNCC 4 cut(s) 284, 1378, 1634, 2081
NmuCI GTSAC 5 cut(s) 160, 236, 551, 2088, 2417
NsiI ATGCAT 1 cut(s) 2124
NspI RCATGY 3 cut(s) 2122, 2425, 2433
PaeR7I CTCGAG 3 cut(s) 35, 173, 2240
PceI AGGCCT 1 cut(s) 2222
PciI ACATGT 2 cut(s) 2421, 2429
PctI GAATGC 2 cut(s) 786, 2023
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 7 cut(s) 1163, 1172, 1207, 1760, 1766, 2284, 2396
PflMI CCANNNNNTGG 3 cut(s) 1510, 1642, 1944
PkrI GCNGC 6 cut(s) 962, 965, 1123, 1936, 2055, 2184
Ple19I CGATCG 1 cut(s) 2255
PleI GAGTC 7 cut(s) 46, 157, 917, 982, 1492, 2037, 2095
PpsI GAGTC 7 cut(s) 46, 157, 917, 982, 1492, 2037, 2095
Ppu21I YACGTR 1 cut(s) 1915
PscI ACATGT 2 cut(s) 2421, 2429
PsiI TTATAA 2 cut(s) 506, 2527
Psp6I CCWGG 5 cut(s) 240, 1542, 1635, 1755, 2082
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 5 cut(s) 240, 1542, 1635, 1755, 2082
PspN4I GGNNCC 4 cut(s) 284, 1378, 1634, 2081
PspPI GGNCC 3 cut(s) 282, 1632, 1745
PspXI VCTCGAGB 2 cut(s) 35, 2240
PstNI CAGNNNCTG 1 cut(s) 902
PvuI CGATCG 1 cut(s) 2255
PvuII CAGCTG 1 cut(s) 963
RsaI GTAC 2 cut(s) 519, 2408
RsaNI GTAC 2 cut(s) 518, 2407
RseI CAYNNNNRTG 6 cut(s) 854, 1347, 1449, 1504, 1596, 2231
SaqAI TTAA 2 cut(s) 621, 701
SatI GCNGC 6 cut(s) 961, 964, 1122, 1935, 2054, 2183
Sau3AI GATC 6 cut(s) 1513, 1603, 1669, 1894, 2252, 2505
Sau96I GGNCC 3 cut(s) 282, 1632, 1745
SchI GAGTC 7 cut(s) 47, 157, 917, 983, 1493, 2038, 2096
ScrFI CCNGG 8 cut(s) 109, 110, 242, 1544, 1637, 1757, 2084, 2510
SduI GDGCHC 5 cut(s) 36, 103, 753, 2429, 2491
SexAI ACCWGGT 1 cut(s) 1542
SfaNI GCATC 7 cut(s) 80, 238, 437, 1339, 1964, 2131, 2266
Sfr274I CTCGAG 3 cut(s) 35, 173, 2240
SinI GGWCC 2 cut(s) 282, 1632
SlaI CTCGAG 3 cut(s) 35, 173, 2240
SmaI CCCGGG 1 cut(s) 110
SmiMI CAYNNNNRTG 6 cut(s) 854, 1347, 1449, 1504, 1596, 2231
SmlI CTYRAG 5 cut(s) 35, 143, 173, 1463, 2240
SmoI CTYRAG 5 cut(s) 35, 143, 173, 1463, 2240
SseBI AGGCCT 1 cut(s) 2222
SsiI CCGC 8 cut(s) 778, 784, 1121, 1777, 1935, 2051, 2466, 2493
SspMI CTAG 4 cut(s) 75, 1125, 2178, 2327
StuI AGGCCT 1 cut(s) 2222
StyD4I CCNGG 8 cut(s) 107, 108, 240, 1542, 1635, 1755, 2082, 2508
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 6 cut(s) 410, 898, 1364, 1908, 2076, 2406
TaiI ACGT 1 cut(s) 1917
TaqI TCGA 6 cut(s) 36, 174, 802, 854, 2241, 2255
TaqII GACCGA 2 cut(s) 1107, 2277
TatI WGTACW 1 cut(s) 2406
TauI GCSGC 2 cut(s) 1124, 1937
TfiI GAWTC 7 cut(s) 1163, 1172, 1207, 1760, 1766, 2284, 2396
Tru1I TTAA 2 cut(s) 621, 701
Tru9I TTAA 2 cut(s) 621, 701
TscAI CASTG 5 cut(s) 343, 1318, 1387, 1879, 2079
TseFI GTSAC 5 cut(s) 160, 236, 551, 2088, 2417
TseI GCWGC 4 cut(s) 960, 963, 2053, 2182
Tsp45I GTSAC 5 cut(s) 160, 236, 551, 2088, 2417
TspGWI ACGGA 1 cut(s) 1871
TspMI CCCGGG 1 cut(s) 108
TspRI CASTG 5 cut(s) 343, 1318, 1387, 1879, 2079
Van91I CCANNNNNTGG 3 cut(s) 1510, 1642, 1944
VneI GTGCAC 1 cut(s) 2425
VpaK11BI GGWCC 2 cut(s) 282, 1632
XapI RAATTY 4 cut(s) 387, 660, 1474, 2364
XbaI TCTAGA 1 cut(s) 74
XceI RCATGY 3 cut(s) 2122, 2425, 2433
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XhoI CTCGAG 3 cut(s) 35, 173, 2240
XmaI CCCGGG 1 cut(s) 108
XmiI GTMKAC 2 cut(s) 16, 84
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 4 cut(s) 75, 1125, 2178, 2327
Zsp2I ATGCAT 1 cut(s) 2124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.