Rorug06G0084500

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
11190429 .. 11194306
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0084500.1

Sequence Viewer

Length: 744 bp
ATGGAACTCTGTGTCTCTTTGATTCTCTTTCTGATTTCTCTGCCAGCATTTTTGGCCAAAGATGTTGGACATGCTAGCGTTGTAGTTGATAGGACAGTAGCTACTGCACAGAGCTTGTCTCATCCTCTGATTGCCAAGTCAATTCAAGGAGATTTGAAATATCCTTGCCATCCTTTCAGAAAGCAGAAGGGTGGGTTGTTTGGATTTTCTACAGGATGTTTACCTATGAGTAGATGGGATGAGCTTAACCATTTTTTCAGCAAGATGAGGCCCCTTGTCACATTTAGCTTGAATGCACTGTCAGGGAGGCACCACAAAGGCGCGGATGTTTGGGTATCAGAAGTGGGAAGGGTTGGTACTGCAGGACTTGGGAAGGTTGTGGAAGTTTTGGACACCTTTAGCAGTAGCATGACAAATTTAAACCCTAGTAGTGGTTTTACCTCTGGGGTGACAACAAAAGGGAACAAAATTTCAATTTTGGCTTTTGAAGTTGCAAACACAATTGTTAAGGGTTCAAATTTAATGCAATCCCTTTCAAAGGATAACATCAAACATTTGAAAGAGGTTGTGCTTCCATCTGAAGGGGTACAGAATTCAATATCGAGAGATATGGATGAACTCCTGAGAACTGCTGCAGCTGACAAGGGAGAAGAACTTAGTGTCTTTTCGGGAGAAGTTGTGCGTTTCGGATATCATTGTAAAGATCCTCAGTGGCACAATTTGGATTGCTACTTTGAGAAGTAA

Protein Analysis

247

Amino Acids

27.02

Weight (kDa)

8.25

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 50 - 114 7.1e-20 Glycosyl hydrolase family 79, N-terminal domain
DUF3475 PF11961 159 - 215 1.3e-22 Domain of unknown function (DUF3475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 415, 468, 517, 592
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 2 cut(s) 358, 588
AfiI CCNNNNNNNGG 3 cut(s) 431, 538, 581
AgsI TTSAA 9 cut(s) 146, 157, 292, 474, 488, 516, 537, 559, 597
AluBI AGCT 5 cut(s) 101, 114, 244, 288, 638
AluI AGCT 5 cut(s) 101, 114, 244, 288, 638
Alw26I GTCTC 2 cut(s) 19, 123
AlwI GGATC 1 cut(s) 698
AoxI GGCC 2 cut(s) 54, 269
ApeKI GCWGC 2 cut(s) 632, 635
ApoI RAATTY 4 cut(s) 415, 468, 517, 592
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 74
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BbvI GCAGC 2 cut(s) 619, 647
BccI CCATC 3 cut(s) 177, 228, 583
BcoDI GTCTC 2 cut(s) 19, 123
BfaI CTAG 2 cut(s) 75, 426
BfmI CTRYAG 3 cut(s) 210, 360, 633
BisI GCNGC 2 cut(s) 633, 636
BlsI GCNGC 2 cut(s) 634, 637
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 272, 311
BmtI GCTAGC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 538, 581
BseGI GGATG 6 cut(s) 121, 169, 221, 244, 331, 619
BseLI CCNNNNNNNGG 3 cut(s) 431, 538, 581
BseMII CTCAG 2 cut(s) 614, 722
BseXI GCAGC 2 cut(s) 619, 647
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 56, 271
BshNI GGYRCC 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 431, 538, 581
BsmAI GTCTC 2 cut(s) 19, 123
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 2 cut(s) 56, 271
Bsp143I GATC 1 cut(s) 703
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 56, 271
BspCNI CTCAG 2 cut(s) 615, 721
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 272, 311
BspMAI CTGCAG 2 cut(s) 364, 637
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 309
BssMI GATC 1 cut(s) 703
Bst4CI ACNGT 2 cut(s) 97, 300
BstC8I GCNNGC 2 cut(s) 45, 76
BstDEI CTNAG 3 cut(s) 623, 656, 708
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 6 cut(s) 121, 169, 221, 244, 331, 619
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 706
BstMAI GTCTC 2 cut(s) 19, 123
BstMBI GATC 1 cut(s) 703
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 3 cut(s) 210, 360, 633
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 619, 647
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BsuRI GGCC 2 cut(s) 56, 271
BtsCI GGATG 6 cut(s) 121, 169, 221, 244, 331, 619
BtsIMutI CAGTG 2 cut(s) 296, 716
Cac8I GCNNGC 2 cut(s) 45, 76
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 357, 587
CviAII CATG 2 cut(s) 71, 409
CviJI RGCY 8 cut(s) 56, 101, 114, 244, 271, 288, 482, 638
CviKI_1 RGCY 8 cut(s) 56, 101, 114, 244, 271, 288, 482, 638
CviQI GTAC 2 cut(s) 357, 587
DdeI CTNAG 3 cut(s) 623, 656, 708
DpnI GATC 1 cut(s) 705
DpnII GATC 1 cut(s) 703
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 54
Eco32I GATATC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 600
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 692
FaeI CATG 2 cut(s) 74, 412
FaiI YATR 4 cut(s) 72, 227, 410, 611
FatI CATG 2 cut(s) 70, 408
Fnu4HI GCNGC 2 cut(s) 633, 636
FokI GGATG 6 cut(s) 108, 156, 228, 251, 338, 626
Fsp4HI GCNGC 2 cut(s) 633, 636
FspBI CTAG 2 cut(s) 75, 426
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 633, 636
HaeIII GGCC 2 cut(s) 56, 271
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 74, 412
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 6 cut(s) 33, 129, 179, 340, 580, 689
Hpy188III TCNNGA 3 cut(s) 603, 622, 669
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 181, 342, 367, 575
HpyCH4III ACNGT 2 cut(s) 97, 300
HpyCH4V TGCA 6 cut(s) 107, 296, 362, 494, 526, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 623, 656, 708
Hsp92II CATG 2 cut(s) 74, 412
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 703
LpnPI CCDG 6 cut(s) 57, 198, 288, 348, 429, 635
Lsp1109I GCAGC 2 cut(s) 619, 647
MaeI CTAG 2 cut(s) 75, 426
MaeIII GTNAC 2 cut(s) 277, 448
MalI GATC 1 cut(s) 705
MboI GATC 1 cut(s) 703
MboII GAAGA 1 cut(s) 662
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 703
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 8 cut(s) 141, 415, 468, 474, 501, 517, 592, 718
MluNI TGGCCA 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 135, 261, 300, 451, 556, 717
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 4 cut(s) 246, 419, 507, 521
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 638
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 298
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 703
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 74, 412
NlaIV GGNNCC 2 cut(s) 272, 311
NmuCI GTSAC 2 cut(s) 277, 448
NspI RCATGY 1 cut(s) 74
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 634, 637
PspN4I GGNNCC 2 cut(s) 272, 311
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 2 cut(s) 364, 637
PsuI RGATCY 1 cut(s) 703
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 358, 588
RsaNI GTAC 2 cut(s) 357, 587
SaqAI TTAA 4 cut(s) 246, 419, 507, 521
SatI GCNGC 2 cut(s) 633, 636
Sau3AI GATC 1 cut(s) 703
Sau96I GGNCC 1 cut(s) 270
SfcI CTRYAG 3 cut(s) 210, 360, 633
Sse9I AATT 8 cut(s) 141, 415, 468, 474, 501, 517, 592, 718
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 75, 426
TaaI ACNGT 2 cut(s) 97, 300
TaqI TCGA 1 cut(s) 602
TasI AATT 8 cut(s) 141, 415, 468, 474, 501, 517, 592, 718
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 4 cut(s) 246, 419, 507, 521
Tru9I TTAA 4 cut(s) 246, 419, 507, 521
TscAI CASTG 2 cut(s) 303, 716
TseFI GTSAC 2 cut(s) 277, 448
TseI GCWGC 2 cut(s) 632, 635
Tsp45I GTSAC 2 cut(s) 277, 448
TspDTI ATGAA 1 cut(s) 630
TspRI CASTG 2 cut(s) 303, 716
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 4 cut(s) 415, 468, 517, 592
XceI RCATGY 1 cut(s) 74
XspI CTAG 2 cut(s) 75, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.