RchiOBHm_Chr3g0473381

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000085
Physical Location & Seq
Forward (+)
19247366 .. 19248831
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43906

Sequence Viewer

Length: 1356 bp
ATGCTTACTTGCAGAACTGACATAGAACTTTTGAATGCCATTGAGGAATCTGTGTGCAATAAATTACGACCTACTGAACATGAGTTTAAAATGTCCATCAGAGGTTTTGAAGAATTTGCAGCAACAAAACAAGCCATTGATAAGGTCATGAATGCGCTAAAAGATGATGAGGCCACTACCATTGGAGTCTACGGAATGGGGGGCGTTGGAAAGACAACAATGGTGAAATATGTTGGAGCACAAGCCCAAAAAAGTAGGCTTTTTAATCAAGTGATTATGGCTGTCGTATCCCAAAACCCCGACTTGATGAAAATTCAAGAGACATTTGCAGAACAACTGGTGGACTTTAAATTGGAGGAGAAGACAGAAATTGGAAGAGCCATTAAATTAAAGGAGGAGATAATGAGAGGAACTGGGATCCTCATAATCTTAGATGACATTTGGAAGAGAATAGACTTTTCAGACATTGGAATTCCGAGCCACAACGAACTTCAAAAATGCAATTCCAAAGTCCTACTGACCACCAGAAGATCGAGAGTTTGTGAGATCATGGAGAGCCAAGAAAAAATTCATCTCAATATCTTATCAAAAGTAGATTCTTGGAGGTTATTTGTGAAGGAAGCAAGGAAGTCTATTGACAAATCATCCAATTTCTATGTTGTAGCGAGTGACGTGGCAAGAGAATGCGCCGGTCTACCAATTGCTTTGATAGCAGTTGCGAGGGCCCTTCGAGATGCAGGTTTGGACAGATGGAAAGAAGCTGCTCGACGACTAAAAGCGTCTCAACCTCCCATCCCTGAAGATGAGAGAGATGTGTTCAAATGCATAAAGTTAAGCTATGATTACTTGAAATCTGATGATTCGAAATCATGCTTCTTGCTTTGCTGCTTGTTCCCAGAAGATTATAATATCCCAATTGAATACTTGGTCAAGTATGGAATTGGGAAAGGAATGTTTCAAGATTCCACCATGCTAGAAGCCCGAGACACAATAAATTTAGTGGTGAAGGACCTTAAAGATTCTAGCTTGCTTTTAGACGGTAGAGATGACAGATGTGTAAGGATGCATGATGTTATTCGGGATATGGGAATATTTATTTCATCATCTGAAGACGGCAAGCGGTTCTTGGTGACAGTTGGCTGTGAATTGAAGAATTGGCCAAATATTGATGCGTGTAAAGGCTACTCTGCAATCTCACTAATGAAGAACAAAATTTGCAAGCTACCCGAAGAGTTGGTATGTCCAAATCTCCAGATTTTATTACTGCAAGACAATGCTTCATTAAATGATATCCCTAAGTCTTTCTTCCAAAGTCAGAAAGAATTAAGAGTCTTGGATCTTAGCCGCACTGCTTGA

Protein Analysis

451

Amino Acids

51.15

Weight (kDa)

6.51

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 43 - 209 8.3e-31 NB-ARC domain
WHD_DRP PF23559 297 - 362 8.6e-06 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
Acc36I ACCTGC 1 cut(s) 728
AccI GTMKAC 2 cut(s) 189, 694
AciI CCGC 2 cut(s) 1120, 1345
AclWI GGATC 3 cut(s) 412, 425, 1344
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 6 cut(s) 113, 312, 471, 567, 994, 1212
AcuI CTGAAG 2 cut(s) 819, 1128
AgsI TTSAA 9 cut(s) 34, 110, 317, 494, 820, 850, 920, 959, 1150
AjiI CACGTC 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 4 cut(s) 761, 837, 1026, 1222
AluI AGCT 4 cut(s) 761, 837, 1026, 1222
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 3 cut(s) 314, 786, 978
AlwI GGATC 3 cut(s) 412, 425, 1344
Ama87I CYCGRG 1 cut(s) 981
AoxI GGCC 3 cut(s) 171, 723, 1157
ApaI GGGCCC 1 cut(s) 727
ApeKI GCWGC 3 cut(s) 119, 761, 885
ApoI RAATTY 6 cut(s) 113, 312, 471, 567, 994, 1212
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 157, 689
AspS9I GGNCC 3 cut(s) 723, 724, 1009
AsuHPI GGTGA 3 cut(s) 235, 1015, 1141
AsuII TTCGAA 1 cut(s) 863
AvaI CYCGRG 1 cut(s) 981
AvaII GGWCC 1 cut(s) 1009
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 1159
BamHI GGATCC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 727
BbsI GAAGAC 2 cut(s) 368, 1116
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 3 cut(s) 131, 748, 872
BccI CCATC 3 cut(s) 104, 744, 800
BceAI ACGGC 1 cut(s) 1129
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 314, 786, 978
BfaI CTAG 2 cut(s) 974, 1023
BfuAI ACCTGC 1 cut(s) 728
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 4 cut(s) 120, 762, 886, 1345
BlsI GCNGC 4 cut(s) 121, 763, 887, 1346
Bme18I GGWCC 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 981
BmgBI CACGTC 1 cut(s) 673
BmgT120I GGNCC 3 cut(s) 723, 724, 1009
BmiI GGNNCC 2 cut(s) 419, 725
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 724, 1053, 1159
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 368, 1116
BpmI CTGGAG 1 cut(s) 1235
Bpu14I TTCGAA 1 cut(s) 863
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 342, 418
BseGI GGATG 3 cut(s) 644, 792, 1068
BseNI ACTGG 2 cut(s) 342, 418
BseRI GAGGAG 2 cut(s) 371, 410
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 3 cut(s) 131, 748, 872
BshFI GGCC 3 cut(s) 173, 725, 1159
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 981
BsiSI CCGG 1 cut(s) 690
BsmAI GTCTC 3 cut(s) 314, 786, 978
BsmBI CGTCTC 1 cut(s) 786
BsmI GAATGC 3 cut(s) 40, 157, 689
BsnI GGCC 3 cut(s) 173, 725, 1159
BsoBI CYCGRG 1 cut(s) 981
Bsp119I TTCGAA 1 cut(s) 863
Bsp120I GGGCCC 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 241, 727
Bsp143I GATC 4 cut(s) 417, 530, 546, 1336
BspACI CCGC 2 cut(s) 1120, 1345
BspANI GGCC 3 cut(s) 173, 725, 1159
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 419, 725
BspMI ACCTGC 1 cut(s) 728
BspPI GGATC 3 cut(s) 412, 425, 1344
BspQI GCTCTTC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 2 cut(s) 342, 418
BssAI RCCGGY 1 cut(s) 689
BssMI GATC 4 cut(s) 417, 530, 546, 1336
Bst4CI ACNGT 2 cut(s) 1040, 1135
Bst6I CTCTTC 3 cut(s) 370, 440, 1224
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 1028, 1118, 1220
BstDEI CTNAG 3 cut(s) 430, 1296, 1340
BstF5I GGATG 3 cut(s) 644, 792, 1068
BstHHI GCGC 2 cut(s) 157, 689
BstKTI GATC 4 cut(s) 420, 533, 549, 1339
BstMAI GTCTC 3 cut(s) 314, 786, 978
BstMBI GATC 4 cut(s) 417, 530, 546, 1336
BstMWI GCNNNNNNNGC 1 cut(s) 710
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 131, 748, 872
BstV2I GAAGAC 2 cut(s) 368, 1116
BstX2I RGATCY 2 cut(s) 417, 1336
BstYI RGATCY 2 cut(s) 417, 1336
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 3 cut(s) 173, 725, 1159
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 3 cut(s) 644, 792, 1068
BtsI GCAGTG 1 cut(s) 1347
BtsIMutI CAGTG 1 cut(s) 1347
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 3 cut(s) 1028, 1118, 1220
CciI TCATGA 1 cut(s) 147
CfoI GCGC 2 cut(s) 157, 689
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 3 cut(s) 723, 724, 1009
CseI GACGC 1 cut(s) 768
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 6 cut(s) 80, 148, 550, 870, 970, 1067
DdeI CTNAG 3 cut(s) 430, 1296, 1340
DpnI GATC 4 cut(s) 419, 532, 548, 1338
DpnII GATC 4 cut(s) 417, 530, 546, 1336
DraI TTTAAA 2 cut(s) 88, 349
EaeI YGGCCR 1 cut(s) 1157
Eam1104I CTCTTC 3 cut(s) 370, 440, 1224
EarI CTCTTC 3 cut(s) 370, 440, 1224
Eco24I GRGCYC 1 cut(s) 727
Eco32I GATATC 1 cut(s) 1291
Eco47I GGWCC 1 cut(s) 1009
Eco57I CTGAAG 2 cut(s) 819, 1128
Eco88I CYCGRG 1 cut(s) 981
EcoO109I RGGNCCY 3 cut(s) 723, 724, 1009
EcoRI GAATTC 1 cut(s) 471
EcoRV GATATC 1 cut(s) 1291
EcoT22I ATGCAT 2 cut(s) 827, 1068
EcoT38I GRGCYC 1 cut(s) 727
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 6 cut(s) 83, 151, 553, 873, 973, 1070
FalI AAGNNNNNCTT 4 cut(s) 1109, 1141, 1289, 1321
FatI CATG 6 cut(s) 79, 147, 549, 869, 969, 1066
FblI GTMKAC 2 cut(s) 189, 694
Fnu4HI GCNGC 4 cut(s) 120, 762, 886, 1345
FokI GGATG 3 cut(s) 631, 779, 1075
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 4 cut(s) 120, 762, 886, 1345
FspBI CTAG 2 cut(s) 974, 1023
GlaI GCGC 2 cut(s) 156, 688
GluI GCNGC 4 cut(s) 120, 762, 886, 1345
GsuI CTGGAG 1 cut(s) 1235
HaeIII GGCC 3 cut(s) 173, 725, 1159
HapII CCGG 1 cut(s) 690
HgaI GACGC 1 cut(s) 768
HhaI GCGC 2 cut(s) 157, 689
Hin1II CATG 6 cut(s) 83, 151, 553, 873, 973, 1070
Hin6I GCGC 2 cut(s) 155, 687
HinP1I GCGC 2 cut(s) 155, 687
HinfI GANTC 7 cut(s) 47, 186, 596, 860, 962, 1019, 1329
HpaII CCGG 1 cut(s) 690
HphI GGTGA 3 cut(s) 235, 1015, 1141
Hpy166II GTNNAC 3 cut(s) 190, 343, 695
Hpy188I TCNGA 6 cut(s) 101, 463, 477, 856, 1108, 1317
Hpy188III TCNNGA 7 cut(s) 148, 317, 534, 731, 959, 1079, 1252
Hpy8I GTNNAC 3 cut(s) 190, 343, 695
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 3 cut(s) 610, 737, 1000
HpyCH4III ACNGT 2 cut(s) 1040, 1135
HpyCH4IV ACGT 1 cut(s) 672
HpyF10VI GCNNNNNNNGC 1 cut(s) 710
HpyF3I CTNAG 3 cut(s) 430, 1296, 1340
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 6 cut(s) 83, 151, 553, 873, 973, 1070
HspAI GCGC 2 cut(s) 155, 687
Kzo9I GATC 4 cut(s) 417, 530, 546, 1336
LguI GCTCTTC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 8 cut(s) 323, 399, 538, 703, 723, 810, 909, 1265
Lsp1109I GCAGC 3 cut(s) 131, 748, 872
LweI GCATC 3 cut(s) 724, 1053, 1159
MaeI CTAG 2 cut(s) 974, 1023
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 2 cut(s) 668, 1129
MalI GATC 4 cut(s) 419, 532, 548, 1338
MboI GATC 4 cut(s) 417, 530, 546, 1336
MfeI CAATTG 2 cut(s) 699, 915
MflI RGATCY 2 cut(s) 417, 1336
MhlI GDGCHC 2 cut(s) 241, 727
MlsI TGGCCA 1 cut(s) 1159
MluNI TGGCCA 1 cut(s) 1159
MlyI GAGTC 2 cut(s) 195, 1338
MmeI TCCRAC 2 cut(s) 187, 214
Mox20I TGGCCA 1 cut(s) 1159
Mph1103I ATGCAT 2 cut(s) 827, 1068
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 1159
MseI TTAA 9 cut(s) 87, 264, 348, 384, 389, 833, 1014, 1283, 1325
Msp20I TGGCCA 1 cut(s) 1159
MspI CCGG 1 cut(s) 690
MunI CAATTG 2 cut(s) 699, 915
Mva1269I GAATGC 3 cut(s) 40, 157, 689
MwoI GCNNNNNNNGC 1 cut(s) 710
NdeII GATC 4 cut(s) 417, 530, 546, 1336
NlaIII CATG 6 cut(s) 83, 151, 553, 873, 973, 1070
NlaIV GGNNCC 2 cut(s) 419, 725
NmuCI GTSAC 2 cut(s) 668, 1129
NsiI ATGCAT 2 cut(s) 827, 1068
NspV TTCGAA 1 cut(s) 863
PagI TCATGA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 370
PctI GAATGC 3 cut(s) 40, 157, 689
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 5 cut(s) 47, 596, 860, 962, 1019
PkrI GCNGC 4 cut(s) 121, 763, 887, 1346
PleI GAGTC 2 cut(s) 194, 1337
PpsI GAGTC 2 cut(s) 194, 1337
PpuMI RGGWCCY 1 cut(s) 1009
PsiI TTATAA 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 1009
PspN4I GGNNCC 2 cut(s) 419, 725
PspOMI GGGCCC 1 cut(s) 723
PspPI GGNCC 3 cut(s) 723, 724, 1009
PspPPI RGGWCCY 1 cut(s) 1009
PsuI RGATCY 2 cut(s) 417, 1336
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 9 cut(s) 87, 264, 348, 384, 389, 833, 1014, 1283, 1325
SatI GCNGC 4 cut(s) 120, 762, 886, 1345
Sau3AI GATC 4 cut(s) 417, 530, 546, 1336
Sau96I GGNCC 3 cut(s) 723, 724, 1009
SchI GAGTC 2 cut(s) 195, 1338
SduI GDGCHC 2 cut(s) 241, 727
SfaNI GCATC 3 cut(s) 724, 1053, 1159
SfuI TTCGAA 1 cut(s) 863
SinI GGWCC 1 cut(s) 1009
SsiI CCGC 2 cut(s) 1120, 1345
SspI AATATT 2 cut(s) 1092, 1165
SspMI CTAG 2 cut(s) 974, 1023
TaaI ACNGT 2 cut(s) 1040, 1135
TaiI ACGT 1 cut(s) 675
TaqI TCGA 4 cut(s) 533, 730, 766, 863
TauI GCSGC 1 cut(s) 1347
TfiI GAWTC 5 cut(s) 47, 596, 860, 962, 1019
Tru1I TTAA 9 cut(s) 87, 264, 348, 384, 389, 833, 1014, 1283, 1325
Tru9I TTAA 9 cut(s) 87, 264, 348, 384, 389, 833, 1014, 1283, 1325
TscAI CASTG 1 cut(s) 1354
TseFI GTSAC 2 cut(s) 668, 1129
TseI GCWGC 3 cut(s) 119, 761, 885
Tsp45I GTSAC 2 cut(s) 668, 1129
TspDTI ATGAA 6 cut(s) 164, 323, 560, 1089, 1217, 1269
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 1 cut(s) 1354
VpaK11BI GGWCC 1 cut(s) 1009
XapI RAATTY 6 cut(s) 113, 312, 471, 567, 994, 1212
XmiI GTMKAC 2 cut(s) 189, 694
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 974, 1023
Zsp2I ATGCAT 2 cut(s) 827, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.