Rmu_ssc0000170.1_g000020

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000170.1
OG0000085
Physical Location & Seq
Reverse (-)
92764 .. 96333
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000170.1_g000020.1.cds

Sequence Viewer

Length: 3468 bp
atgggggcgggggcgtgggggaaacttgaggcgggggcgggggcggggggcgcgggggcgggggaatcccccgtttgctcaatcttatctgctcctcggaggaagtacgatgtttttctgagtttccggggtgaagatactcgcaggactattgttccctttatataccaggaattgcaaaacagagaaattgaaacattcatggatgacacaggacttagcagagggacgtatattgctccgagtctgctaacagcaatccaagaatccaggtcagcgatcgttgttctttcaccaaactatgcgtattctagatggtgtttggacgaattgacaatgatcattcagtgcatggaagataagagcacaacagtcatcccaatcttttatgatgtggatccctctgatgtgcgacatcagagagggagttttgcaactgccttcactagtcaccaagaaaggctcgcgcaagactatgactacccaaataagttgaaccagtggagagttgctttaacaaaagttgcagatctctctggcttggaatcaaacaaatatagttctgacttagaacttgtcaaagacattgtggaaaccgtgtgcagtaaattacgacctattgatgttgagtgggcattgtcgtctaccggagattttgtagcatttgaagcaacaagacgagccatggacaaggtaatgagggcacttcaagatgatgagatcactgccattggggtctttggtatgggaggcgttggcaagacgagtatggtggaacatgtcggtgcacaagcccggaaaattgggctttttaatcatgtgattatggctgtcgtatcccaaacacctaatttgagaaatattcaaggcacactggctgatctgcttggcttaaagttgcaggaggagacagatattgggagagcagctagaatagcggagaagatattaagaggatataagatccttataatcttggacgacatttggaacacaatagatttgtctactatcggagtaccgaaccgtacagagcttcaaaggtgcaattcaaaggtcgtactcaccacaaggagggtgaatgtttgtcattccatgcggagccaagcaagcattcctctccgagttctgtcagaagatgatgcttgggacctgtttgtgaagacagcaagaatttcttttcatgaatcacccaacttttattatgtagcgaggacggtagctaaagaatgtgctggtctcccacttgcattggtagcagttgcaagggcacttggagataaagacttatatgattgggaagaagcagctcgacgactaaaggctgctcaacctgccaactatgaagatgagggacaggtgttcagctgtataaagttaagctatgattacttgaaacctgatgatgacaacattgccaagtcgttcttcttgctttgctgtctattccctgaagattttgatatcgaggtcgaagacttgttgatgtatgcaatggggaaaggaatatttgaagatgccctcacaatacacgaagccagagccaaagcccatttggtggtcaattacctgaaagcttctagcttgcttttggacggtgcacaccacggattcgtgaagatgcatgatgtcattcgagatgtggccatatcaatttcattattggaagatggcccacggtttttggttaaagctggttgtgaattaagggattggccagcgattgacattgctcatgaatactctgcaatctcgctaatgaggaatcaaattcacgagcttcccaaaaagttggtatgttcaaaactccagattttattactacagagcaatagtataaatgagattccaaaccgtttctttcttagtcccaatgaattgagggtcttagatctcagcgagactagtatttcgtgtctaccctcgtcatcaggtcttctaaccaatctccaagctttgtatttagataaatgcaagagaatagttgatatatccatactcggaaaactgaagaaccttcagattcttagtatgaagaaccttgacattattaatacgggaggaattcgtcaaaaagcattgccaaaagaaataggacgcttaaccaagcttaagatgttggatgttacggatgcatgttttcaaacagttccatctaaagtgatatcaaacttgaatggattagaagaattgtacatgaaatgtgactttgatgactggggcagaggaatggttgagggcagtagtttattttcttttgtttttggctctgccaataatgctagcttttgtgagttaacaggcttatcacgcttaaacagtttgaaagttcacatatctgatgtaaaatgcttgccccgaaaagttagattcaatcccaattgggtcaactttgatatatgtatcggcagaagtatttttattgaacagtcctattacggacgctttttcgagaggaaacaaactgtcaagttggatccatgtcaacatctctttcggtatgtgactctagacacaagcgcggagagcttaccggattggtttatcgaggtggtgacagagaaagcagtgatactggagtacatagggtacagtggcttagagaacattcttgtggaatacgaccttgggagattacatgtgctgaagtgtcttgctgtaattgagtgccgtatgtatggaaagttgatgaactcaggaagaagggttctaaataaacctgtgtttgagagcttggaagagttgtatctagaaggggtccatggcctgaaggggttatgtgttggtgagttaccacctgggtctctgcgcaatctaaagttgttaaatgtgagaaattgcctggaattggtgggtgcacttttgcaatcaaatttgttgcaaaggctacaaaatctggaaatactacattgtgagtacacggaggatgtgaaagaaaccaaattggaatctgtgtttgaatttggatggctggaaacaaagggaattgtcttaccaaaattgagagagatgacattatgttatcttgagaacctcagaagcatatgcatttgtcgtcatcttcccagtggagccttccgtaatcttaacagtctggcaattcgtggctgccacaaactgaaatatctgttcgagaacaatgtagctcaatctcttttccgattgaaactcctttggctggacgggtgctctgacttggaaacagttatcgttccaagccgggaaacagagatcaacaacctagtttttccaaaattgaaggaaatatatttgaatagtcttccaaatctcaaatggatctacagaagcaatagggtcgtgtgccctttattggaacacttgtacgtgtacagttgtcccggactttcaaaacttgctgcttctgacttccaaagcaagaaccacgtccaagccaataatgaaggacattttgcaatcatatttgaaaggtatgatcctatgtcataa

Protein Analysis

1155

Amino Acids

130.22

Weight (kDa)

6.21

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 971
Acc16I TGCGCA 1 cut(s) 2810
Acc36I ACCTGC 1 cut(s) 1342
AccB7I CCANNNNNTGG 1 cut(s) 1558
AccI GTMKAC 3 cut(s) 644, 1007, 1918
AccII CGCG 3 cut(s) 53, 467, 2522
AciI CCGC 9 cut(s) 8, 32, 38, 44, 53, 59, 938, 1099, 2522
AclWI GGATC 7 cut(s) 392, 405, 958, 2471, 2484, 3305, 3449
AcoI YGGCCR 2 cut(s) 1644, 1715
AcsI RAATTY 5 cut(s) 1173, 1770, 2064, 2872, 2960
AcuI CTGAAG 5 cut(s) 1473, 2003, 2030, 2666, 2789
AfiI CCNNNNNNNGG 5 cut(s) 1074, 1558, 2848, 3178, 3331
AflII CTTAAG 1 cut(s) 2111
AflIII ACRYGT 3 cut(s) 778, 2638, 3345
AhlI ACTAGT 2 cut(s) 446, 1904
AjiI CACGTC 1 cut(s) 3406
AjnI CCWGG 4 cut(s) 168, 269, 2797, 2841
AjuI GAANNNNNNNTTGG 6 cut(s) 1098, 1130, 1412, 1444, 2610, 2642
AloI GAACNNNNNNTCC 2 cut(s) 2691, 2723
Alw21I GWGCWC 5 cut(s) 368, 790, 1603, 2860, 3191
Alw26I GTCTC 4 cut(s) 902, 1244, 1895, 2808
Alw44I GTGCAC 3 cut(s) 786, 1599, 2856
AlwI GGATC 7 cut(s) 392, 405, 958, 2471, 2484, 3305, 3449
AoxI GGCC 4 cut(s) 1644, 1672, 1715, 2764
ApaLI GTGCAC 3 cut(s) 786, 1599, 2856
ApeKI GCWGC 5 cut(s) 926, 1307, 1325, 3108, 3377
ApoI RAATTY 5 cut(s) 1173, 1770, 2064, 2872, 2960
ArsI GACNNNNNNTTYG 2 cut(s) 1894, 1926
AseI ATTAAT 1 cut(s) 2052
AspLEI GCGC 4 cut(s) 53, 469, 2522, 2811
AspS9I GGNCC 3 cut(s) 1150, 1673, 2758
AsuC2I CCSGG 4 cut(s) 128, 796, 3221, 3360
AsuHPI GGTGA 8 cut(s) 143, 285, 443, 1057, 1090, 1182, 2566, 2798
AsuNHI GCTAGC 1 cut(s) 2282
AvaII GGWCC 2 cut(s) 1150, 2758
BaeGI GKGCMC 6 cut(s) 706, 790, 1273, 1603, 2860, 3326
BaeI ACNNNNGTAYC 2 cut(s) 2564, 2597
BalI TGGCCA 2 cut(s) 1646, 1717
BamHI GGATCC 2 cut(s) 397, 2476
BauI CACGAG 1 cut(s) 1775
BbsI GAAGAC 4 cut(s) 1169, 1482, 1928, 3272
Bbv12I GWGCWC 5 cut(s) 368, 790, 1603, 2860, 3191
BbvI GCAGC 5 cut(s) 938, 1312, 1319, 3095, 3364
BccI CCATC 4 cut(s) 309, 1664, 2161, 2961
BceAI ACGGC 1 cut(s) 2655
BcgI CGANNNNNNTGC 2 cut(s) 3298, 3332
BciT130I CCWGG 4 cut(s) 170, 271, 2799, 2843
BciVI GTATCC 1 cut(s) 847
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 4 cut(s) 128, 796, 3221, 3360
BcoDI GTCTC 4 cut(s) 902, 1244, 1895, 2808
BcuI ACTAGT 2 cut(s) 446, 1904
BfaI CTAG 9 cut(s) 312, 447, 930, 1581, 1905, 2283, 2510, 2750, 3242
BfmI CTRYAG 2 cut(s) 1823, 3301
BfrI CTTAAG 1 cut(s) 2111
BfuAI ACCTGC 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 847
BglII AGATCT 2 cut(s) 529, 1891
BisI GCNGC 5 cut(s) 927, 1308, 1326, 3109, 3378
BlsI GCNGC 5 cut(s) 928, 1309, 1327, 3110, 3379
Bme1390I CCNGG 8 cut(s) 128, 170, 271, 796, 2799, 2843, 3221, 3360
Bme18I GGWCC 2 cut(s) 1150, 2758
BmgBI CACGTC 1 cut(s) 3406
BmgT120I GGNCC 3 cut(s) 1150, 1673, 2758
BmiI GGNNCC 6 cut(s) 399, 1103, 1151, 2478, 2759, 3073
BmrFI CCNGG 8 cut(s) 128, 170, 271, 796, 2799, 2843, 3221, 3360
BmrI ACTGGG 2 cut(s) 2227, 3060
BmsI GCATC 4 cut(s) 1132, 1507, 1611, 2122
BmtI GCTAGC 1 cut(s) 2286
BmuI ACTGGG 2 cut(s) 2227, 3060
BpiI GAAGAC 4 cut(s) 1169, 1482, 1928, 3272
BpmI CTGGAG 2 cut(s) 1793, 2597
BpuEI CTTGAG 2 cut(s) 47, 3047
BpuMI CCSGG 4 cut(s) 128, 796, 3221, 3360
BsaAI YACGTR 1 cut(s) 3346
BsaBI GATNNNNATC 1 cut(s) 396
BsaI GGTCTC 2 cut(s) 1244, 2808
BsaJI CCNNGG 8 cut(s) 95, 127, 684, 1606, 1676, 2626, 2761, 2798
BsaWI WCCGGW 2 cut(s) 647, 2533
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bsc4I CCNNNNNNNGG 5 cut(s) 1074, 1558, 2848, 3178, 3331
Bse1I ACTGG 5 cut(s) 499, 879, 2222, 2580, 3066
Bse3DI GCAATG 4 cut(s) 1413, 1500, 1728, 2078
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 4 cut(s) 170, 271, 2799, 2843
BseDI CCNNGG 8 cut(s) 95, 127, 684, 1606, 1676, 2626, 2761, 2798
BseGI GGATG 6 cut(s) 211, 375, 2128, 2137, 2932, 2972
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 5 cut(s) 1074, 1558, 2848, 3178, 3331
BseMI GCAATG 4 cut(s) 1413, 1500, 1728, 2078
BseMII CTCAG 4 cut(s) 110, 1909, 2709, 3049
BseNI ACTGG 5 cut(s) 499, 879, 2222, 2580, 3066
BseRI GAGGAG 2 cut(s) 84, 920
BseSI GKGCMC 6 cut(s) 706, 790, 1273, 1603, 2860, 3326
BseXI GCAGC 5 cut(s) 938, 1312, 1319, 3095, 3364
BsgI GTGCAG 1 cut(s) 622
Bsh1236I CGCG 3 cut(s) 53, 467, 2522
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 4 cut(s) 1646, 1674, 1717, 2766
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 5 cut(s) 368, 790, 1603, 2860, 3191
BsiSI CCGG 6 cut(s) 127, 648, 796, 2534, 3220, 3360
BslFI GGGAC 5 cut(s) 241, 1163, 1368, 1854, 3342
BslI CCNNNNNNNGG 5 cut(s) 1074, 1558, 2848, 3178, 3331
BsmAI GTCTC 4 cut(s) 902, 1244, 1895, 2808
BsmFI GGGAC 5 cut(s) 241, 1163, 1368, 1854, 3342
BsmI GAATGC 1 cut(s) 1113
BsnI GGCC 4 cut(s) 1646, 1674, 1717, 2766
Bso31I GGTCTC 2 cut(s) 1244, 2808
Bsp1286I GDGCHC 8 cut(s) 368, 706, 790, 1273, 1603, 2860, 3191, 3326
Bsp1407I TGTACA 2 cut(s) 2193, 3348
Bsp19I CCATGG 2 cut(s) 684, 2761
BspACI CCGC 9 cut(s) 8, 32, 38, 44, 53, 59, 938, 1099, 2522
BspANI GGCC 4 cut(s) 1646, 1674, 1717, 2766
BspCNI CTCAG 4 cut(s) 111, 1908, 2708, 3048
BspFNI CGCG 3 cut(s) 53, 467, 2522
BspHI TCATGA 2 cut(s) 1183, 1735
BspLI GGNNCC 6 cut(s) 399, 1103, 1151, 2478, 2759, 3073
BspMI ACCTGC 1 cut(s) 1342
BspOI GCTAGC 1 cut(s) 2286
BspPI GGATC 7 cut(s) 392, 405, 958, 2471, 2484, 3305, 3449
BspTI CTTAAG 1 cut(s) 2111
BspTNI GGTCTC 2 cut(s) 1244, 2808
BsrDI GCAATG 4 cut(s) 1413, 1500, 1728, 2078
BsrGI TGTACA 2 cut(s) 2193, 3348
BsrI ACTGG 5 cut(s) 499, 879, 2222, 2580, 3066
BssECI CCNNGG 8 cut(s) 95, 127, 684, 1606, 1676, 2626, 2761, 2798
BssSI CACGAG 1 cut(s) 1775
BssT1I CCWWGG 3 cut(s) 684, 2626, 2761
Bst2BI CACGAG 1 cut(s) 1775
Bst2UI CCWGG 4 cut(s) 170, 271, 2799, 2843
Bst6I CTCTTC 1 cut(s) 2733
BstAFI CTTAAG 1 cut(s) 2111
BstAUI TGTACA 2 cut(s) 2193, 3348
BstBAI YACGTR 1 cut(s) 3346
BstC8I GCNNGC 6 cut(s) 465, 1111, 1586, 1719, 2284, 2354
BstDSI CCRYGG 4 cut(s) 684, 1606, 1676, 2761
BstF5I GGATG 6 cut(s) 211, 375, 2128, 2137, 2932, 2972
BstFNI CGCG 3 cut(s) 53, 467, 2522
BstHHI GCGC 4 cut(s) 53, 469, 2522, 2811
BstMAI GTCTC 4 cut(s) 902, 1244, 1895, 2808
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 9 cut(s) 50, 668, 935, 1110, 1256, 1334, 2279, 2310, 2526
BstNI CCWGG 4 cut(s) 170, 271, 2799, 2843
BstNSI RCATGY 3 cut(s) 782, 2139, 2642
BstSCI CCNGG 8 cut(s) 126, 168, 269, 794, 2797, 2841, 3219, 3358
BstSFI CTRYAG 2 cut(s) 1823, 3301
BstSLI GKGCMC 6 cut(s) 706, 790, 1273, 1603, 2860, 3326
BstUI CGCG 3 cut(s) 53, 467, 2522
BstV1I GCAGC 5 cut(s) 938, 1312, 1319, 3095, 3364
BstV2I GAAGAC 4 cut(s) 1169, 1482, 1928, 3272
BstX2I RGATCY 6 cut(s) 397, 529, 963, 1891, 2476, 3297
BstXI CCANNNNNNTGG 1 cut(s) 1792
BstYI RGATCY 6 cut(s) 397, 529, 963, 1891, 2476, 3297
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 4 cut(s) 1646, 1674, 1717, 2766
BtgI CCRYGG 4 cut(s) 684, 1606, 1676, 2761
BtrI CACGTC 1 cut(s) 3406
BtsCI GGATG 6 cut(s) 211, 375, 2128, 2137, 2932, 2972
BtsI GCAGTG 2 cut(s) 723, 2574
BtsIMutI CAGTG 7 cut(s) 353, 506, 723, 872, 2574, 2599, 3073
BveI ACCTGC 1 cut(s) 1342
Cac8I GCNNGC 6 cut(s) 465, 1111, 1586, 1719, 2284, 2354
CciI TCATGA 2 cut(s) 1183, 1735
CfoI GCGC 4 cut(s) 53, 469, 2522, 2811
Cfr13I GGNCC 3 cut(s) 1150, 1673, 2758
CseI GACGC 2 cut(s) 2106, 2451
CspCI CAANNNNNGTGG 4 cut(s) 1233, 1268, 1665, 1700
EaeI YGGCCR 2 cut(s) 1644, 1715
Eam1104I CTCTTC 1 cut(s) 2733
EarI CTCTTC 1 cut(s) 2733
Eco130I CCWWGG 3 cut(s) 684, 2626, 2761
Eco31I GGTCTC 2 cut(s) 1244, 2808
Eco32I GATATC 2 cut(s) 1465, 2166
Eco47I GGWCC 2 cut(s) 1150, 2758
Eco57I CTGAAG 5 cut(s) 1473, 2003, 2030, 2666, 2789
EcoO109I RGGNCCY 1 cut(s) 1150
EcoRI GAATTC 1 cut(s) 2064
EcoRII CCWGG 4 cut(s) 168, 269, 2797, 2841
EcoRV GATATC 2 cut(s) 1465, 2166
EcoT14I CCWWGG 3 cut(s) 684, 2626, 2761
EcoT22I ATGCAT 3 cut(s) 1626, 2137, 3050
ErhI CCWWGG 3 cut(s) 684, 2626, 2761
FalI AAGNNNNNCTT 4 cut(s) 1162, 1194, 1412, 1444
FaqI GGGAC 5 cut(s) 241, 1163, 1368, 1854, 3342
FauI CCCGC 5 cut(s) 25, 31, 37, 46, 52
FauNDI CATATG 1 cut(s) 3044
FbaI TGATCA 1 cut(s) 339
FblI GTMKAC 3 cut(s) 644, 1007, 1918
Fnu4HI GCNGC 5 cut(s) 927, 1308, 1326, 3109, 3378
FokI GGATG 6 cut(s) 218, 362, 2135, 2144, 2939, 2979
Fsp4HI GCNGC 5 cut(s) 927, 1308, 1326, 3109, 3378
FspBI CTAG 9 cut(s) 312, 447, 930, 1581, 1905, 2283, 2510, 2750, 3242
FspI TGCGCA 1 cut(s) 2810
GlaI GCGC 4 cut(s) 52, 468, 2521, 2810
GluI GCNGC 5 cut(s) 927, 1308, 1326, 3109, 3378
GsuI CTGGAG 2 cut(s) 1793, 2597
HaeIII GGCC 4 cut(s) 1646, 1674, 1717, 2766
HapII CCGG 6 cut(s) 127, 648, 796, 2534, 3220, 3360
HgaI GACGC 2 cut(s) 2106, 2451
HhaI GCGC 4 cut(s) 53, 469, 2522, 2811
Hin6I GCGC 4 cut(s) 51, 467, 2520, 2809
HinP1I GCGC 4 cut(s) 51, 467, 2520, 2809
HincII GTYRAC 3 cut(s) 2298, 2389, 2486
HindII GTYRAC 3 cut(s) 2298, 2389, 2486
HindIII AAGCTT 3 cut(s) 1575, 1953, 2108
HpaI GTTAAC 1 cut(s) 2298
HpaII CCGG 6 cut(s) 127, 648, 796, 2534, 3220, 3360
HphI GGTGA 8 cut(s) 143, 285, 443, 1057, 1090, 1182, 2566, 2798
Hpy99I CGWCG 1 cut(s) 1317
HpyAV CCTTC 8 cut(s) 451, 2027, 2697, 2747, 2764, 3085, 3253, 3416
HpyCH4IV ACGT 3 cut(s) 230, 3345, 3405
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 668, 935, 1110, 1256, 1334, 2279, 2310, 2526
HpySE526I ACGT 3 cut(s) 230, 3345, 3405
HspAI GCGC 4 cut(s) 51, 467, 2520, 2809
Ksp22I TGATCA 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 2298
LmnI GCTCC 4 cut(s) 97, 244, 1101, 3071
Lsp1109I GCAGC 5 cut(s) 938, 1312, 1319, 3095, 3364
LweI GCATC 4 cut(s) 1132, 1507, 1611, 2122
MaeI CTAG 9 cut(s) 312, 447, 930, 1581, 1905, 2283, 2510, 2750, 3242
MaeII ACGT 3 cut(s) 230, 3345, 3405
MaeIII GTNAC 6 cut(s) 449, 2125, 2204, 2503, 2554, 2790
MfeI CAATTG 1 cut(s) 2380
MflI RGATCY 6 cut(s) 397, 529, 963, 1891, 2476, 3297
MhlI GDGCHC 8 cut(s) 368, 706, 790, 1273, 1603, 2860, 3191, 3326
MlsI TGGCCA 2 cut(s) 1646, 1717
MluNI TGGCCA 2 cut(s) 1646, 1717
MlyI GAGTC 2 cut(s) 253, 2500
MmeI TCCRAC 2 cut(s) 2100, 2454
Mox20I TGGCCA 2 cut(s) 1646, 1717
Mph1103I ATGCAT 3 cut(s) 1626, 2137, 3050
MscI TGGCCA 2 cut(s) 1646, 1717
MslI CAYNNNNRTG 2 cut(s) 783, 2612
Msp20I TGGCCA 2 cut(s) 1646, 1717
MspA1I CMGCKG 1 cut(s) 1368
MspCI CTTAAG 1 cut(s) 2111
MspI CCGG 6 cut(s) 127, 648, 796, 2534, 3220, 3360
MspR9I CCNGG 8 cut(s) 128, 170, 271, 796, 2799, 2843, 3221, 3360
MunI CAATTG 1 cut(s) 2380
Mva1269I GAATGC 1 cut(s) 1113
MvaI CCWGG 4 cut(s) 170, 271, 2799, 2843
MvnI CGCG 3 cut(s) 53, 467, 2522
MwoI GCNNNNNNNGC 9 cut(s) 50, 668, 935, 1110, 1256, 1334, 2279, 2310, 2526
NciI CCSGG 4 cut(s) 128, 796, 3221, 3360
NcoI CCATGG 2 cut(s) 684, 2761
NdeI CATATG 1 cut(s) 3044
NheI GCTAGC 1 cut(s) 2282
NlaIV GGNNCC 6 cut(s) 399, 1103, 1151, 2478, 2759, 3073
NmuCI GTSAC 4 cut(s) 449, 2204, 2503, 2554
NsbI TGCGCA 1 cut(s) 2810
NsiI ATGCAT 3 cut(s) 1626, 2137, 3050
NspI RCATGY 3 cut(s) 782, 2139, 2642
PagI TCATGA 2 cut(s) 1183, 1735
PciI ACATGT 2 cut(s) 778, 2638
PctI GAATGC 1 cut(s) 1113
PflMI CCANNNNNTGG 1 cut(s) 1558
PfoI TCCNGGA 1 cut(s) 3358
PkrI GCNGC 5 cut(s) 928, 1309, 1327, 3110, 3379
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 2 cut(s) 252, 2500
PpsI GAGTC 2 cut(s) 252, 2500
Ppu21I YACGTR 1 cut(s) 3346
PpuMI RGGWCCY 1 cut(s) 1150
PscI ACATGT 2 cut(s) 778, 2638
PshBI ATTAAT 1 cut(s) 2052
PsiI TTATAA 1 cut(s) 971
Psp5II RGGWCCY 1 cut(s) 1150
Psp6I CCWGG 4 cut(s) 168, 269, 2797, 2841
PspGI CCWGG 4 cut(s) 168, 269, 2797, 2841
PspN4I GGNNCC 6 cut(s) 399, 1103, 1151, 2478, 2759, 3073
PspPI GGNCC 3 cut(s) 1150, 1673, 2758
PspPPI RGGWCCY 1 cut(s) 1150
PsuI RGATCY 6 cut(s) 397, 529, 963, 1891, 2476, 3297
PvuI CGATCG 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 1368
RseI CAYNNNNRTG 2 cut(s) 783, 2612
SatI GCNGC 5 cut(s) 927, 1308, 1326, 3109, 3378
Sau96I GGNCC 3 cut(s) 1150, 1673, 2758
SchI GAGTC 2 cut(s) 253, 2500
ScrFI CCNGG 8 cut(s) 128, 170, 271, 796, 2799, 2843, 3221, 3360
SduI GDGCHC 8 cut(s) 368, 706, 790, 1273, 1603, 2860, 3191, 3326
SfaNI GCATC 4 cut(s) 1132, 1507, 1611, 2122
SfcI CTRYAG 2 cut(s) 1823, 3301
SinI GGWCC 2 cut(s) 1150, 2758
SmiMI CAYNNNNRTG 2 cut(s) 783, 2612
SmlI CTYRAG 3 cut(s) 26, 2111, 3026
SmoI CTYRAG 3 cut(s) 26, 2111, 3026
SpeI ACTAGT 2 cut(s) 446, 1904
SsiI CCGC 9 cut(s) 8, 32, 38, 44, 53, 59, 938, 1099, 2522
SspI AATATT 2 cut(s) 862, 1509
SspMI CTAG 9 cut(s) 312, 447, 930, 1581, 1905, 2283, 2510, 2750, 3242
StyD4I CCNGG 8 cut(s) 126, 168, 269, 794, 2797, 2841, 3219, 3358
StyI CCWWGG 3 cut(s) 684, 2626, 2761
TaiI ACGT 3 cut(s) 233, 3348, 3408
TaqI TCGA 7 cut(s) 1312, 1467, 1473, 1636, 2451, 2547, 3132
TatI WGTACW 4 cut(s) 2193, 2580, 2916, 3348
TscAI CASTG 7 cut(s) 353, 506, 730, 879, 2574, 2599, 3073
TseFI GTSAC 4 cut(s) 449, 2204, 2503, 2554
TseI GCWGC 5 cut(s) 926, 1307, 1325, 3108, 3377
Tsp45I GTSAC 4 cut(s) 449, 2204, 2503, 2554
TspGWI ACGGA 5 cut(s) 1623, 2144, 2454, 2936, 3068
TspRI CASTG 7 cut(s) 353, 506, 730, 879, 2574, 2599, 3073
Van91I CCANNNNNTGG 1 cut(s) 1558
Vha464I CTTAAG 1 cut(s) 2111
VneI GTGCAC 3 cut(s) 786, 1599, 2856
VpaK11BI GGWCC 2 cut(s) 1150, 2758
VspI ATTAAT 1 cut(s) 2052
XapI RAATTY 5 cut(s) 1173, 1770, 2064, 2872, 2960
XbaI TCTAGA 3 cut(s) 311, 2509, 2749
XceI RCATGY 3 cut(s) 782, 2139, 2642
XcmI CCANNNNNNNNNTGG 2 cut(s) 1552, 3291
XmiI GTMKAC 3 cut(s) 644, 1007, 1918
XspI CTAG 9 cut(s) 312, 447, 930, 1581, 1905, 2283, 2510, 2750, 3242
Zsp2I ATGCAT 3 cut(s) 1626, 2137, 3050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.