Rmu_sc0005006.1_g000009

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005006.1
OG0000085
Physical Location & Seq
Reverse (-)
33806 .. 36927
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005006.1_g000009.1.cds

Sequence Viewer

Length: 2673 bp
atgtatgcaattgggaaaggattgcttcaagatgtcaaaacaatccaagaagccagagctacagcaaattcgctgatcaagtccctcagacattacggcttacttttggacggtacaaaggaaggatgtgtaaggatgcatgatgtagtgcgtgatgtagccgtgttgatttcgatgaataaagttcgtcctatttctatggtaatatcgggttgtggaattcggaagtggccaacgattgttccgcgcagacgctactctgcaatctcactaatgatgaatgatattcgcacgcttcctgacaacttggtatgctcagaactccagattttgttactacaaaacaattctggtatagatggtatcccagaaaatttttttcaacgttggcatgcggtaagggtcttagatattagctccactaatatttcgtcaccactcacgtcatttaattgcctaaccaacctccaagcattgtttttagattattgcaataagttaagtgacacatccatattcagaaacttgaagaaactcaagattcttagtatgagagagtttcctcttgaggagttaccgaaagagataggatatttgaccaatctaaggatgctggacttaagtgggagttacaaacttggtatgtttccatataatgtcatgtcaagattgtgtaaattagaagaactgtacatgcaatgtggggtcttgggaagcaaaactcatggaggaggagaagaaactgaagttgatcttgataagttcattggcttgacacatttaaacgttgtgaagcttcacatatctgatgcagaatgcttgcctaaaactgttatacacagtttgagttgggagaacttcaacatatgtatcagcgctgaattaccatctagaaactactcttcaacaccatatttttcagatgatcattcaagaaccctgactcttagcacaacaatcaagagcttaccagattggtttatcaacacagtgacaaagaaagcagggaaactacagtacctaaagtgcgaaggcctgaacattcttgtggaatatgagagagggaggttacatggactgaagtatctagctgtaattgggccccataagaatatggaagtgttgatggacacaattacatgggtgccgaataaacctgtattcgagaacttggaagagttgcatctccttggcgtgagttgcctgaaggcattatgtcttggtgaattaccacccgggtctctattcaatctcaagtcattaaagttggaatattgccatgacatggtgagtgcaatgttgccatcaaatttgttgaagagtatacaaaatctggaaaaacttcactgtgaagatatgaatggaattgagtatgtgtttggatatgaagggttggagccagaagatattatcttgacaaaattgagagagatgatattgtgggatctagagaaactgataagcatatggaattgtcctgctccaaatgcagtgttccgtaaccttaaaagtatggcagtgtccgggtgcaagaaattgaaaagtcttttcacatacgatgtagctgaatgtctttttcatttggaagacctttcagtgactcaatgtcctagcttggacagggttattgaaccaagcaaggaagcagtgaacaagaagatagtgtttccagaattgaagatcttggctttgtcatatcttccacatctcacaaggttctgcagtactgaaagtgctactattgagtgcccttcattggagcacttgcatgtgcaggcctgcccccattttacaacatctatttctgacttccacagctggaagcaattccaagtcaatgatctacgacatttgagaatgagcaaagacatggtcaacatcgatttagctggtcagcacaccatggacatccttgagagcctaccccagaatatcagaaagcgggttgaggttattagagattttcagcgtcaacatgatgagttacagaccaagttcttcaaggagagagcagcacttgaagccaagtatcagaaactatatcaacctctattcaaaaagagatgcatgattgtaaatggtgttgttgaagctgatggagttacaactgaagcagcagcaaatcaagaggacaaagctgcaaaagagagaggagtgtgtgatttctggctcaatgcactgaagaataatgatgtgctggccaatcagatcactgagcgtgatgaaagagctcttaaatatcttgaagacataaagtggtttaggatacgtaatcctaaggggttcaaacttgagttctactttgacaccaatccatttttcaaaaactctatcttgacaaagacatatcacatgattggtgaagatgaaccacagaaagcagtaggtaccgagattgaatggtatcaggcaaaatgcctgacacagaggacccttaaggagaagtctaagaagggatcgaagaattctaagccactcactagaactgaaagttgtgaaagtttcttcaacttctttagtccacctcaaatccccgaggatgatgcagatgttgatgaagatgttgctgaggaactcaagaacctgaagaaacaagattatgatattgggtcgatcattcgatataagattatcccacatgcttattcatggtttacaggtgaggctttttag

Protein Analysis

890

Amino Acids

101.95

Weight (kDa)

6.79

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2387
AccB1I GGYRCC 2 cut(s) 1144, 2387
AccB7I CCANNNNNTGG 1 cut(s) 1285
AccI GTMKAC 1 cut(s) 1324
AccII CGCG 1 cut(s) 247
AciI CCGC 3 cut(s) 245, 395, 1942
AclI AACGTT 2 cut(s) 385, 786
AclWI GGATC 2 cut(s) 1452, 2464
AcoI YGGCCR 2 cut(s) 230, 2199
AcsI RAATTY 5 cut(s) 67, 219, 373, 1309, 2464
AcuI CTGAAG 6 cut(s) 765, 1100, 1226, 2130, 2201, 2606
AfaI GTAC 5 cut(s) 115, 692, 1019, 1726, 2389
AfeI AGCGCT 1 cut(s) 877
AfiI CCNNNNNNNGG 3 cut(s) 606, 1285, 1756
AflII CTTAAG 2 cut(s) 619, 2435
AhdI GACNNNNNGTC 1 cut(s) 1605
AjiI CACGTC 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 2303, 2335
Alw21I GWGCWC 2 cut(s) 1764, 2233
Alw26I GTCTC 1 cut(s) 1245
AlwI GGATC 2 cut(s) 1452, 2464
Ama87I CYCGRG 2 cut(s) 1235, 2534
Aor51HI AGCGCT 1 cut(s) 877
AoxI GGCC 5 cut(s) 230, 1033, 1100, 1776, 2199
ApaI GGGCCC 1 cut(s) 1104
ApeKI GCWGC 4 cut(s) 2012, 2114, 2117, 2138
ApoI RAATTY 5 cut(s) 67, 219, 373, 1309, 2464
ArsI GACNNNNNNTTYG 2 cut(s) 1857, 1889
Asp700I GAANNNNTTC 2 cut(s) 1341, 1826
Asp718I GGTACC 1 cut(s) 2387
AspLEI GCGC 2 cut(s) 249, 878
AspS9I GGNCC 3 cut(s) 1100, 1101, 2430
AsuC2I CCSGG 3 cut(s) 1236, 1237, 1525
AsuHPI GGTGA 5 cut(s) 426, 1235, 1300, 2372, 2672
AvaI CYCGRG 2 cut(s) 1235, 2534
AvaII GGWCC 1 cut(s) 2430
AxyI CCTNAGG 1 cut(s) 2277
BaeGI GKGCMC 2 cut(s) 1104, 1751
BaeI ACNNNNGTAYC 6 cut(s) 853, 886, 1001, 1034, 1067, 1100
BalI TGGCCA 2 cut(s) 232, 2201
BanI GGYRCC 2 cut(s) 1144, 2387
BanII GRGCYC 2 cut(s) 1104, 2233
BbsI GAAGAC 2 cut(s) 1593, 2253
Bbv12I GWGCWC 2 cut(s) 1764, 2233
BbvCI CCTCAGC 1 cut(s) 2568
BbvI GCAGC 4 cut(s) 2024, 2125, 2126, 2129
BccI CCATC 5 cut(s) 353, 895, 1120, 1312, 2090
BceAI ACGGC 2 cut(s) 112, 146
BcgI CGANNNNNNTGC 2 cut(s) 2525, 2559
BciVI GTATCC 2 cut(s) 374, 2259
BclI TGATCA 2 cut(s) 75, 925
BcnI CCSGG 3 cut(s) 1236, 1237, 1525
BcoDI GTCTC 1 cut(s) 1245
BfaI CTAG 5 cut(s) 891, 1088, 1448, 1611, 2481
BfmI CTRYAG 3 cut(s) 60, 1013, 1720
BfoI RGCGCY 1 cut(s) 879
BfrI CTTAAG 2 cut(s) 619, 2435
BfuI GTATCC 2 cut(s) 374, 2259
BglII AGATCT 1 cut(s) 1680
BisI GCNGC 4 cut(s) 2013, 2115, 2118, 2139
BlsI GCNGC 4 cut(s) 2014, 2116, 2119, 2140
BmcAI AGTACT 1 cut(s) 1726
Bme1390I CCNGG 3 cut(s) 1236, 1237, 1525
Bme18I GGWCC 1 cut(s) 2430
BmeRI GACNNNNNGTC 1 cut(s) 1605
BmeT110I CYCGRG 2 cut(s) 1235, 2534
BmgBI CACGTC 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 1100, 1101, 2430
BmiI GGNNCC 6 cut(s) 1102, 1103, 1146, 1398, 2389, 2432
BmrFI CCNGG 3 cut(s) 1236, 1237, 1525
BmsI GCATC 6 cut(s) 126, 600, 799, 1192, 2054, 2533
BpiI GAAGAC 2 cut(s) 1593, 2253
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 2568
BpuEI CTTGAG 6 cut(s) 521, 587, 1238, 1934, 2312, 2561
BpuMI CCSGG 3 cut(s) 1236, 1237, 1525
Bsa29I ATCGAT 1 cut(s) 1881
BsaAI YACGTR 1 cut(s) 2270
BsaI GGTCTC 1 cut(s) 1245
BsaJI CCNNGG 4 cut(s) 1189, 1235, 1902, 2535
Bsc4I CCNNNNNNNGG 3 cut(s) 606, 1285, 1756
Bse21I CCTNAGG 1 cut(s) 2277
Bse3DI GCAATG 2 cut(s) 704, 1302
BseCI ATCGAT 1 cut(s) 1881
BseDI CCNNGG 4 cut(s) 1189, 1235, 1902, 2535
BseGI GGATG 6 cut(s) 131, 141, 509, 615, 1908, 2545
BseLI CCNNNNNNNGG 3 cut(s) 606, 1285, 1756
BseMI GCAATG 2 cut(s) 704, 1302
BseMII CTCAG 4 cut(s) 100, 330, 2205, 2559
BseRI GAGGAG 4 cut(s) 584, 744, 747, 2166
BseSI GKGCMC 2 cut(s) 1104, 1751
BseXI GCAGC 4 cut(s) 2024, 2125, 2126, 2129
BsgI GTGCAG 1 cut(s) 1793
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 5 cut(s) 232, 1035, 1102, 1778, 2201
BshNI GGYRCC 2 cut(s) 1144, 2387
BshVI ATCGAT 1 cut(s) 1881
BsiHKAI GWGCWC 2 cut(s) 1764, 2233
BsiHKCI CYCGRG 2 cut(s) 1235, 2534
BsiSI CCGG 2 cut(s) 1236, 1524
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 606, 1285, 1756
BsmAI GTCTC 1 cut(s) 1245
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 5 cut(s) 232, 1035, 1102, 1778, 2201
Bso31I GGTCTC 1 cut(s) 1245
BsoBI CYCGRG 2 cut(s) 1235, 2534
Bsp120I GGGCCC 1 cut(s) 1100
Bsp1286I GDGCHC 4 cut(s) 1104, 1751, 1764, 2233
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
Bsp19I CCATGG 1 cut(s) 1902
BspACI CCGC 3 cut(s) 245, 395, 1942
BspANI GGCC 5 cut(s) 232, 1035, 1102, 1778, 2201
BspCNI CTCAG 4 cut(s) 99, 329, 2206, 2560
BspDI ATCGAT 1 cut(s) 1881
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 6 cut(s) 1102, 1103, 1146, 1398, 2389, 2432
BspMAI CTGCAG 1 cut(s) 1724
BspPI GGATC 2 cut(s) 1452, 2464
BspT107I GGYRCC 2 cut(s) 1144, 2387
BspTI CTTAAG 2 cut(s) 619, 2435
BspTNI GGTCTC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 704, 1302
BsrGI TGTACA 1 cut(s) 690
BssECI CCNNGG 4 cut(s) 1189, 1235, 1902, 2535
BssMI GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
BssNAI GTATAC 1 cut(s) 1325
BssT1I CCWWGG 2 cut(s) 1189, 1902
Bst1107I GTATAC 1 cut(s) 1325
Bst4CI ACNGT 7 cut(s) 113, 690, 832, 842, 991, 1017, 1349
Bst6I CTCTTC 3 cut(s) 907, 1170, 1313
BstAFI CTTAAG 2 cut(s) 619, 2435
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 2270
BstC8I GCNNGC 6 cut(s) 293, 393, 821, 1776, 1780, 2199
BstDSI CCRYGG 1 cut(s) 1902
BstF5I GGATG 6 cut(s) 131, 141, 509, 615, 1908, 2545
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 879
BstHHI GCGC 2 cut(s) 249, 878
BstKTI GATC 9 cut(s) 78, 754, 928, 1447, 1683, 1843, 2211, 2459, 2616
BstMAI GTCTC 1 cut(s) 1245
BstMBI GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
BstMWI GCNNNNNNNGC 3 cut(s) 1200, 1487, 2021
BstNSI RCATGY 4 cut(s) 395, 697, 1772, 2642
BstSCI CCNGG 3 cut(s) 1234, 1235, 1523
BstSFI CTRYAG 3 cut(s) 60, 1013, 1720
BstSLI GKGCMC 2 cut(s) 1104, 1751
BstSNI TACGTA 1 cut(s) 2270
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 2024, 2125, 2126, 2129
BstV2I GAAGAC 2 cut(s) 1593, 2253
BstX2I RGATCY 2 cut(s) 1444, 1680
BstYI RGATCY 2 cut(s) 1444, 1680
BstZ17I GTATAC 1 cut(s) 1325
Bsu15I ATCGAT 1 cut(s) 1881
Bsu36I CCTNAGG 1 cut(s) 2277
BsuI GTATCC 2 cut(s) 374, 2259
BsuRI GGCC 5 cut(s) 232, 1035, 1102, 1778, 2201
BsuTUI ATCGAT 1 cut(s) 1881
BtgI CCRYGG 1 cut(s) 1902
BtrI CACGTC 1 cut(s) 444
BtsCI GGATG 6 cut(s) 131, 141, 509, 615, 1908, 2545
BtsI GCAGTG 3 cut(s) 1497, 1524, 1653
BtsIMutI CAGTG 8 cut(s) 996, 1345, 1497, 1524, 1602, 1653, 2177, 2211
Cac8I GCNNGC 6 cut(s) 293, 393, 821, 1776, 1780, 2199
CfoI GCGC 2 cut(s) 249, 878
Cfr13I GGNCC 3 cut(s) 1100, 1101, 2430
Cfr9I CCCGGG 1 cut(s) 1235
ClaI ATCGAT 1 cut(s) 1881
CseI GACGC 2 cut(s) 261, 1958
Csp6I GTAC 5 cut(s) 114, 691, 1018, 1725, 2388
CviQI GTAC 5 cut(s) 114, 691, 1018, 1725, 2388
DpnI GATC 9 cut(s) 77, 753, 927, 1446, 1682, 1842, 2210, 2458, 2615
DpnII GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
DraI TTTAAA 1 cut(s) 783
DriI GACNNNNNGTC 1 cut(s) 1605
EaeI YGGCCR 2 cut(s) 230, 2199
Eam1104I CTCTTC 3 cut(s) 907, 1170, 1313
Eam1105I GACNNNNNGTC 1 cut(s) 1605
EarI CTCTTC 3 cut(s) 907, 1170, 1313
Ecl136II GAGCTC 1 cut(s) 2231
Eco105I TACGTA 1 cut(s) 2270
Eco130I CCWWGG 2 cut(s) 1189, 1902
Eco147I AGGCCT 2 cut(s) 1035, 1778
Eco24I GRGCYC 2 cut(s) 1104, 2233
Eco31I GGTCTC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 2430
Eco47III AGCGCT 1 cut(s) 877
Eco53kI GAGCTC 1 cut(s) 2231
Eco57I CTGAAG 6 cut(s) 765, 1100, 1226, 2130, 2201, 2606
Eco81I CCTNAGG 1 cut(s) 2277
Eco88I CYCGRG 2 cut(s) 1235, 2534
EcoICRI GAGCTC 1 cut(s) 2231
EcoO109I RGGNCCY 2 cut(s) 1101, 2430
EcoRI GAATTC 2 cut(s) 219, 2464
EcoT14I CCWWGG 2 cut(s) 1189, 1902
EcoT22I ATGCAT 2 cut(s) 141, 2069
EcoT38I GRGCYC 2 cut(s) 1104, 2233
ErhI CCWWGG 2 cut(s) 1189, 1902
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 738, 770
FaqI GGGAC 1 cut(s) 67
FauI CCCGC 1 cut(s) 1935
FauNDI CATATG 2 cut(s) 866, 1466
FbaI TGATCA 2 cut(s) 75, 925
FblI GTMKAC 1 cut(s) 1324
Fnu4HI GCNGC 4 cut(s) 2013, 2115, 2118, 2139
FokI GGATG 6 cut(s) 138, 148, 496, 622, 1895, 2552
FriOI GRGCYC 2 cut(s) 1104, 2233
Fsp4HI GCNGC 4 cut(s) 2013, 2115, 2118, 2139
FspBI CTAG 5 cut(s) 891, 1088, 1448, 1611, 2481
GlaI GCGC 2 cut(s) 248, 877
GluI GCNGC 4 cut(s) 2013, 2115, 2118, 2139
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 879
HaeIII GGCC 5 cut(s) 232, 1035, 1102, 1778, 2201
HapII CCGG 2 cut(s) 1236, 1524
HgaI GACGC 2 cut(s) 261, 1958
HhaI GCGC 2 cut(s) 249, 878
Hin6I GCGC 2 cut(s) 247, 876
HinP1I GCGC 2 cut(s) 247, 876
HincII GTYRAC 2 cut(s) 1876, 1973
HindII GTYRAC 2 cut(s) 1876, 1973
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 3 cut(s) 541, 943, 1600
HpaII CCGG 2 cut(s) 1236, 1524
HphI GGTGA 5 cut(s) 426, 1235, 1300, 2372, 2672
Hpy166II GTNNAC 6 cut(s) 1325, 1651, 1876, 1973, 2522, 2655
Hpy8I GTNNAC 6 cut(s) 1325, 1651, 1876, 1973, 2522, 2655
HpyAV CCTTC 6 cut(s) 116, 1025, 1201, 1382, 1761, 2446
HpyCH4III ACNGT 7 cut(s) 113, 690, 832, 842, 991, 1017, 1349
HpyCH4IV ACGT 4 cut(s) 385, 443, 786, 2269
HpyF10VI GCNNNNNNNGC 3 cut(s) 1200, 1487, 2021
HpySE526I ACGT 4 cut(s) 385, 443, 786, 2269
HspAI GCGC 2 cut(s) 247, 876
KpnI GGTACC 1 cut(s) 2391
Ksp22I TGATCA 2 cut(s) 75, 925
Kzo9I GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
LmnI GCTCC 4 cut(s) 422, 1396, 1486, 1759
Lsp1109I GCAGC 4 cut(s) 2024, 2125, 2126, 2129
LweI GCATC 6 cut(s) 126, 600, 799, 1192, 2054, 2533
MaeI CTAG 5 cut(s) 891, 1088, 1448, 1611, 2481
MaeII ACGT 4 cut(s) 385, 443, 786, 2269
MalI GATC 9 cut(s) 77, 753, 927, 1446, 1682, 1842, 2210, 2458, 2615
MboI GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 2 cut(s) 1444, 1680
MhlI GDGCHC 4 cut(s) 1104, 1751, 1764, 2233
MlsI TGGCCA 2 cut(s) 232, 2201
MluNI TGGCCA 2 cut(s) 232, 2201
MlyI GAGTC 2 cut(s) 937, 1594
MmeI TCCRAC 2 cut(s) 1248, 1374
Mox20I TGGCCA 2 cut(s) 232, 2201
Mph1103I ATGCAT 2 cut(s) 141, 2069
MroXI GAANNNNTTC 2 cut(s) 1341, 1826
MscI TGGCCA 2 cut(s) 232, 2201
MseI TTAA 8 cut(s) 450, 500, 620, 782, 1262, 1506, 2235, 2436
MslI CAYNNNNRTG 2 cut(s) 1046, 1767
Msp20I TGGCCA 2 cut(s) 232, 2201
MspA1I CMGCKG 1 cut(s) 1818
MspCI CTTAAG 2 cut(s) 619, 2435
MspI CCGG 2 cut(s) 1236, 1524
MspR9I CCNGG 3 cut(s) 1236, 1237, 1525
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 821
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 1200, 1487, 2021
NciI CCSGG 3 cut(s) 1236, 1237, 1525
NcoI CCATGG 1 cut(s) 1902
NdeI CATATG 2 cut(s) 866, 1466
NdeII GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
NlaIV GGNNCC 6 cut(s) 1102, 1103, 1146, 1398, 2389, 2432
NmuCI GTSAC 4 cut(s) 432, 503, 991, 1597
NsiI ATGCAT 2 cut(s) 141, 2069
NspI RCATGY 4 cut(s) 395, 697, 1772, 2642
PaeI GCATGC 1 cut(s) 395
PceI AGGCCT 2 cut(s) 1035, 1778
PctI GAATGC 1 cut(s) 821
PdmI GAANNNNTTC 2 cut(s) 1341, 1826
PfeI GAWTC 1 cut(s) 541
PflFI GACNNNGTC 1 cut(s) 1871
PflMI CCANNNNNTGG 1 cut(s) 1285
PkrI GCNGC 4 cut(s) 2014, 2116, 2119, 2140
PleI GAGTC 2 cut(s) 937, 1594
PpsI GAGTC 2 cut(s) 937, 1594
Ppu21I YACGTR 1 cut(s) 2270
PpuMI RGGWCCY 1 cut(s) 2430
Psp124BI GAGCTC 1 cut(s) 2233
Psp1406I AACGTT 2 cut(s) 385, 786
Psp5II RGGWCCY 1 cut(s) 2430
PspN4I GGNNCC 6 cut(s) 1102, 1103, 1146, 1398, 2389, 2432
PspOMI GGGCCC 1 cut(s) 1100
PspPI GGNCC 3 cut(s) 1100, 1101, 2430
PspPPI RGGWCCY 1 cut(s) 2430
PstI CTGCAG 1 cut(s) 1724
PsuI RGATCY 2 cut(s) 1444, 1680
PsyI GACNNNGTC 1 cut(s) 1871
PvuII CAGCTG 1 cut(s) 1818
RsaI GTAC 5 cut(s) 115, 692, 1019, 1726, 2389
RsaNI GTAC 5 cut(s) 114, 691, 1018, 1725, 2388
RseI CAYNNNNRTG 2 cut(s) 1046, 1767
SacI GAGCTC 1 cut(s) 2233
SaqAI TTAA 8 cut(s) 450, 500, 620, 782, 1262, 1506, 2235, 2436
SatI GCNGC 4 cut(s) 2013, 2115, 2118, 2139
Sau3AI GATC 9 cut(s) 75, 751, 925, 1444, 1680, 1840, 2208, 2456, 2613
Sau96I GGNCC 3 cut(s) 1100, 1101, 2430
ScaI AGTACT 1 cut(s) 1726
SchI GAGTC 2 cut(s) 937, 1594
ScrFI CCNGG 3 cut(s) 1236, 1237, 1525
SduI GDGCHC 4 cut(s) 1104, 1751, 1764, 2233
SfaNI GCATC 6 cut(s) 126, 600, 799, 1192, 2054, 2533
SfcI CTRYAG 3 cut(s) 60, 1013, 1720
SinI GGWCC 1 cut(s) 2430
SmaI CCCGGG 1 cut(s) 1237
SmiMI CAYNNNNRTG 2 cut(s) 1046, 1767
SmlI CTYRAG 8 cut(s) 536, 566, 619, 1253, 1913, 2291, 2435, 2576
SmoI CTYRAG 8 cut(s) 536, 566, 619, 1253, 1913, 2291, 2435, 2576
SnaBI TACGTA 1 cut(s) 2270
SphI GCATGC 1 cut(s) 395
SseBI AGGCCT 2 cut(s) 1035, 1778
SsiI CCGC 3 cut(s) 245, 395, 1942
SspI AATATT 2 cut(s) 427, 1274
SspMI CTAG 5 cut(s) 891, 1088, 1448, 1611, 2481
SstI GAGCTC 1 cut(s) 2233
StuI AGGCCT 2 cut(s) 1035, 1778
StyD4I CCNGG 3 cut(s) 1234, 1235, 1523
StyI CCWWGG 2 cut(s) 1189, 1902
TaaI ACNGT 7 cut(s) 113, 690, 832, 842, 991, 1017, 1349
TaiI ACGT 4 cut(s) 388, 446, 789, 2272
TaqI TCGA 6 cut(s) 173, 1164, 1881, 2459, 2612, 2620
TatI WGTACW 2 cut(s) 690, 1724
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 8 cut(s) 450, 500, 620, 782, 1262, 1506, 2235, 2436
Tru9I TTAA 8 cut(s) 450, 500, 620, 782, 1262, 1506, 2235, 2436
TscAI CASTG 8 cut(s) 996, 1352, 1497, 1524, 1602, 1653, 2184, 2218
TseFI GTSAC 4 cut(s) 432, 503, 991, 1597
TseI GCWGC 4 cut(s) 2012, 2114, 2117, 2138
Tsp45I GTSAC 4 cut(s) 432, 503, 991, 1597
TspGWI ACGGA 1 cut(s) 1487
TspMI CCCGGG 1 cut(s) 1235
TspRI CASTG 8 cut(s) 996, 1352, 1497, 1524, 1602, 1653, 2184, 2218
Tth111I GACNNNGTC 1 cut(s) 1871
Van91I CCANNNNNTGG 1 cut(s) 1285
Vha464I CTTAAG 2 cut(s) 619, 2435
VpaK11BI GGWCC 1 cut(s) 2430
XapI RAATTY 5 cut(s) 67, 219, 373, 1309, 2464
XbaI TCTAGA 2 cut(s) 890, 1447
XceI RCATGY 4 cut(s) 395, 697, 1772, 2642
XmaI CCCGGG 1 cut(s) 1235
XmiI GTMKAC 1 cut(s) 1324
XmnI GAANNNNTTC 2 cut(s) 1341, 1826
XspI CTAG 5 cut(s) 891, 1088, 1448, 1611, 2481
ZrmI AGTACT 1 cut(s) 1726
Zsp2I ATGCAT 2 cut(s) 141, 2069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.