Crossover junction endonuclease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 944 |
| AciI | CCGC | 1 cut(s) | 427 |
| AclI | AACGTT | 1 cut(s) | 664 |
| AcoI | YGGCCR | 2 cut(s) | 100, 257 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AfaI | GTAC | 2 cut(s) | 503, 1133 |
| AfeI | AGCGCT | 1 cut(s) | 140 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 611, 1019 |
| AgsI | TTSAA | 2 cut(s) | 213, 913 |
| AjnI | CCWGG | 2 cut(s) | 526, 746 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 779, 811 |
| AleI | CACNNNNGTG | 2 cut(s) | 316, 318 |
| AluBI | AGCT | 1 cut(s) | 1144 |
| AluI | AGCT | 1 cut(s) | 1144 |
| Alw26I | GTCTC | 1 cut(s) | 891 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| Aor51HI | AGCGCT | 1 cut(s) | 140 |
| AoxI | GGCC | 7 cut(s) | 100, 257, 367, 569, 602, 640, 993 |
| ApeKI | GCWGC | 1 cut(s) | 817 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 470, 502 |
| AspLEI | GCGC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 3 cut(s) | 603, 641, 770 |
| AsuHPI | GGTGA | 3 cut(s) | 317, 796, 944 |
| AvaII | GGWCC | 1 cut(s) | 770 |
| BalI | TGGCCA | 1 cut(s) | 259 |
| BanII | GRGCYC | 1 cut(s) | 274 |
| BauI | CACGAG | 1 cut(s) | 314 |
| BbsI | GAAGAC | 3 cut(s) | 380, 913, 1117 |
| BbvI | GCAGC | 1 cut(s) | 829 |
| BccI | CCATC | 6 cut(s) | 125, 200, 429, 492, 639, 1034 |
| BceAI | ACGGC | 1 cut(s) | 628 |
| BciT130I | CCWGG | 2 cut(s) | 528, 748 |
| BcoDI | GTCTC | 1 cut(s) | 891 |
| BfoI | RGCGCY | 1 cut(s) | 142 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1001 |
| BisI | GCNGC | 2 cut(s) | 427, 818 |
| BlsI | GCNGC | 2 cut(s) | 428, 819 |
| Bme1390I | CCNGG | 2 cut(s) | 528, 748 |
| Bme18I | GGWCC | 1 cut(s) | 770 |
| BmgT120I | GGNCC | 3 cut(s) | 603, 641, 770 |
| BmiI | GGNNCC | 3 cut(s) | 448, 772, 877 |
| BmrFI | CCNGG | 2 cut(s) | 528, 748 |
| BmrI | ACTGGG | 1 cut(s) | 277 |
| BmsI | GCATC | 2 cut(s) | 676, 1095 |
| BmuI | ACTGGG | 1 cut(s) | 277 |
| BpiI | GAAGAC | 3 cut(s) | 380, 913, 1117 |
| BpuEI | CTTGAG | 1 cut(s) | 473 |
| BsaJI | CCNNGG | 2 cut(s) | 747, 879 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 143, 173 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 611, 1019 |
| Bse1I | ACTGG | 3 cut(s) | 272, 298, 869 |
| Bse3DI | GCAATG | 5 cut(s) | 204, 306, 833, 993, 1068 |
| BseBI | CCWGG | 2 cut(s) | 528, 748 |
| BseDI | CCNNGG | 2 cut(s) | 747, 879 |
| BseGI | GGATG | 5 cut(s) | 117, 503, 631, 691, 851 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 611, 1019 |
| BseMI | GCAATG | 5 cut(s) | 204, 306, 833, 993, 1068 |
| BseNI | ACTGG | 3 cut(s) | 272, 298, 869 |
| BseRI | GAGGAG | 1 cut(s) | 888 |
| BseXI | GCAGC | 1 cut(s) | 829 |
| BsgI | GTGCAG | 2 cut(s) | 9, 362 |
| Bsh1285I | CGRYCG | 1 cut(s) | 658 |
| BshFI | GGCC | 7 cut(s) | 102, 259, 369, 571, 604, 642, 995 |
| BsiEI | CGRYCG | 1 cut(s) | 658 |
| BslFI | GGGAC | 5 cut(s) | 380, 458, 756, 875, 1057 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 611, 1019 |
| BsmAI | GTCTC | 1 cut(s) | 891 |
| BsmFI | GGGAC | 5 cut(s) | 380, 458, 756, 875, 1057 |
| BsmI | GAATGC | 2 cut(s) | 49, 793 |
| BsnI | GGCC | 7 cut(s) | 102, 259, 369, 571, 604, 642, 995 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 1 cut(s) | 655 |
| BspACI | CCGC | 1 cut(s) | 427 |
| BspANI | GGCC | 7 cut(s) | 102, 259, 369, 571, 604, 642, 995 |
| BspLI | GGNNCC | 3 cut(s) | 448, 772, 877 |
| BspQI | GCTCTTC | 1 cut(s) | 279 |
| BsrDI | GCAATG | 5 cut(s) | 204, 306, 833, 993, 1068 |
| BsrI | ACTGG | 3 cut(s) | 272, 298, 869 |
| BssECI | CCNNGG | 2 cut(s) | 747, 879 |
| BssMI | GATC | 1 cut(s) | 655 |
| BssSI | CACGAG | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 1 cut(s) | 879 |
| Bst2BI | CACGAG | 1 cut(s) | 314 |
| Bst2UI | CCWGG | 2 cut(s) | 528, 748 |
| Bst4CI | ACNGT | 4 cut(s) | 131, 364, 722, 889 |
| Bst6I | CTCTTC | 1 cut(s) | 279 |
| BstC8I | GCNNGC | 3 cut(s) | 569, 622, 744 |
| BstEII | GGTNACC | 1 cut(s) | 323 |
| BstF5I | GGATG | 5 cut(s) | 117, 503, 631, 691, 851 |
| BstH2I | RGCGCY | 1 cut(s) | 142 |
| BstHHI | GCGC | 1 cut(s) | 141 |
| BstKTI | GATC | 1 cut(s) | 658 |
| BstMAI | GTCTC | 1 cut(s) | 891 |
| BstMBI | GATC | 1 cut(s) | 655 |
| BstMCI | CGRYCG | 1 cut(s) | 658 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 426, 621, 992, 1001 |
| BstNI | CCWGG | 2 cut(s) | 528, 748 |
| BstPI | GGTNACC | 1 cut(s) | 323 |
| BstSCI | CCNGG | 2 cut(s) | 526, 746 |
| BstV1I | GCAGC | 1 cut(s) | 829 |
| BstV2I | GAAGAC | 3 cut(s) | 380, 913, 1117 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 267, 638 |
| BsuRI | GGCC | 7 cut(s) | 102, 259, 369, 571, 604, 642, 995 |
| BtgZI | GCGATG | 1 cut(s) | 407 |
| BtsCI | GGATG | 5 cut(s) | 117, 503, 631, 691, 851 |
| BtsIMutI | CAGTG | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 3 cut(s) | 569, 622, 744 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| CfoI | GCGC | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 3 cut(s) | 603, 641, 770 |
| Csp6I | GTAC | 2 cut(s) | 502, 1132 |
| CviAII | CATG | 4 cut(s) | 255, 329, 944, 970 |
| CviQI | GTAC | 2 cut(s) | 502, 1132 |
| DpnI | GATC | 1 cut(s) | 657 |
| DpnII | GATC | 1 cut(s) | 655 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 944 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 944 |
| EaeI | YGGCCR | 2 cut(s) | 100, 257 |
| Eam1104I | CTCTTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 1 cut(s) | 279 |
| Eco130I | CCWWGG | 1 cut(s) | 879 |
| Eco24I | GRGCYC | 1 cut(s) | 274 |
| Eco47I | GGWCC | 1 cut(s) | 770 |
| Eco47III | AGCGCT | 1 cut(s) | 140 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| Eco91I | GGTNACC | 1 cut(s) | 323 |
| EcoO109I | RGGNCCY | 2 cut(s) | 603, 770 |
| EcoO65I | GGTNACC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 2 cut(s) | 526, 746 |
| EcoT14I | CCWWGG | 1 cut(s) | 879 |
| EcoT38I | GRGCYC | 1 cut(s) | 274 |
| ErhI | CCWWGG | 1 cut(s) | 879 |
| FaeI | CATG | 4 cut(s) | 258, 332, 947, 973 |
| FaqI | GGGAC | 5 cut(s) | 380, 458, 756, 875, 1057 |
| FatI | CATG | 4 cut(s) | 254, 328, 943, 969 |
| FauNDI | CATATG | 1 cut(s) | 637 |
| Fnu4HI | GCNGC | 2 cut(s) | 427, 818 |
| FokI | GGATG | 5 cut(s) | 104, 510, 618, 698, 838 |
| FriOI | GRGCYC | 1 cut(s) | 274 |
| Fsp4HI | GCNGC | 2 cut(s) | 427, 818 |
| GlaI | GCGC | 1 cut(s) | 140 |
| GluI | GCNGC | 2 cut(s) | 427, 818 |
| HaeII | RGCGCY | 1 cut(s) | 142 |
| HaeIII | GGCC | 7 cut(s) | 102, 259, 369, 571, 604, 642, 995 |
| HhaI | GCGC | 1 cut(s) | 141 |
| Hin1II | CATG | 4 cut(s) | 258, 332, 947, 973 |
| Hin6I | GCGC | 1 cut(s) | 139 |
| HinP1I | GCGC | 1 cut(s) | 139 |
| HincII | GTYRAC | 1 cut(s) | 892 |
| HindII | GTYRAC | 1 cut(s) | 892 |
| HinfI | GANTC | 4 cut(s) | 534, 848, 906, 1045 |
| HphI | GGTGA | 3 cut(s) | 317, 796, 944 |
| Hpy166II | GTNNAC | 4 cut(s) | 93, 151, 662, 892 |
| Hpy188I | TCNGA | 3 cut(s) | 655, 685, 856 |
| Hpy188III | TCNNGA | 5 cut(s) | 109, 232, 597, 659, 910 |
| Hpy8I | GTNNAC | 4 cut(s) | 93, 151, 662, 892 |
| Hpy99I | CGWCG | 1 cut(s) | 149 |
| HpyAV | CCTTC | 2 cut(s) | 594, 840 |
| HpyCH4III | ACNGT | 4 cut(s) | 131, 364, 722, 889 |
| HpyCH4IV | ACGT | 1 cut(s) | 664 |
| HpyCH4V | TGCA | 9 cut(s) | 26, 47, 311, 379, 670, 701, 734, 817, 1086 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 426, 621, 992, 1001 |
| HpySE526I | ACGT | 1 cut(s) | 664 |
| Hsp92II | CATG | 4 cut(s) | 258, 332, 947, 973 |
| HspAI | GCGC | 1 cut(s) | 139 |
| Kzo9I | GATC | 1 cut(s) | 655 |
| LguI | GCTCTTC | 1 cut(s) | 279 |
| LmnI | GCTCC | 2 cut(s) | 146, 875 |
| Lsp1109I | GCAGC | 1 cut(s) | 829 |
| LweI | GCATC | 2 cut(s) | 676, 1095 |
| MaeII | ACGT | 1 cut(s) | 664 |
| MaeIII | GTNAC | 1 cut(s) | 323 |
| MalI | GATC | 1 cut(s) | 657 |
| MboI | GATC | 1 cut(s) | 655 |
| MboII | GAAGA | 5 cut(s) | 27, 266, 380, 913, 1117 |
| MfeI | CAATTG | 1 cut(s) | 183 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MlsI | TGGCCA | 1 cut(s) | 259 |
| MluCI | AATT | 3 cut(s) | 183, 214, 261 |
| MluNI | TGGCCA | 1 cut(s) | 259 |
| MlyI | GAGTC | 2 cut(s) | 543, 1039 |
| Mox20I | TGGCCA | 1 cut(s) | 259 |
| MscI | TGGCCA | 1 cut(s) | 259 |
| MseI | TTAA | 3 cut(s) | 516, 588, 803 |
| MslI | CAYNNNNRTG | 5 cut(s) | 42, 316, 318, 636, 856 |
| Msp20I | TGGCCA | 1 cut(s) | 259 |
| MspR9I | CCNGG | 2 cut(s) | 528, 748 |
| MunI | CAATTG | 1 cut(s) | 183 |
| Mva1269I | GAATGC | 2 cut(s) | 49, 793 |
| MvaI | CCWGG | 2 cut(s) | 528, 748 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 426, 621, 992, 1001 |
| NdeI | CATATG | 1 cut(s) | 637 |
| NdeII | GATC | 1 cut(s) | 655 |
| NlaIII | CATG | 4 cut(s) | 258, 332, 947, 973 |
| NlaIV | GGNNCC | 3 cut(s) | 448, 772, 877 |
| NmeAIII | GCCGAG | 1 cut(s) | 78 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| OliI | CACNNNNGTG | 2 cut(s) | 316, 318 |
| PciSI | GCTCTTC | 1 cut(s) | 279 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 852 |
| PctI | GAATGC | 2 cut(s) | 49, 793 |
| PfeI | GAWTC | 2 cut(s) | 848, 906 |
| PkrI | GCNGC | 2 cut(s) | 428, 819 |
| Ple19I | CGATCG | 1 cut(s) | 658 |
| PleI | GAGTC | 2 cut(s) | 542, 1039 |
| PpsI | GAGTC | 2 cut(s) | 542, 1039 |
| PpuMI | RGGWCCY | 1 cut(s) | 770 |
| Psp1406I | AACGTT | 1 cut(s) | 664 |
| Psp5II | RGGWCCY | 1 cut(s) | 770 |
| Psp6I | CCWGG | 2 cut(s) | 526, 746 |
| PspEI | GGTNACC | 1 cut(s) | 323 |
| PspGI | CCWGG | 2 cut(s) | 526, 746 |
| PspN4I | GGNNCC | 3 cut(s) | 448, 772, 877 |
| PspPI | GGNCC | 3 cut(s) | 603, 641, 770 |
| PspPPI | RGGWCCY | 1 cut(s) | 770 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1019, 1051 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| PvuI | CGATCG | 1 cut(s) | 658 |
| RsaI | GTAC | 2 cut(s) | 503, 1133 |
| RsaNI | GTAC | 2 cut(s) | 502, 1132 |
| RseI | CAYNNNNRTG | 5 cut(s) | 42, 316, 318, 636, 856 |
| SapI | GCTCTTC | 1 cut(s) | 279 |
| SaqAI | TTAA | 3 cut(s) | 516, 588, 803 |
| SatI | GCNGC | 2 cut(s) | 427, 818 |
| Sau3AI | GATC | 1 cut(s) | 655 |
| Sau96I | GGNCC | 3 cut(s) | 603, 641, 770 |
| SchI | GAGTC | 2 cut(s) | 543, 1039 |
| ScrFI | CCNGG | 2 cut(s) | 528, 748 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SfaNI | GCATC | 2 cut(s) | 676, 1095 |
| SinI | GGWCC | 1 cut(s) | 770 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 42, 316, 318, 636, 856 |
| SmlI | CTYRAG | 1 cut(s) | 452 |
| SmoI | CTYRAG | 1 cut(s) | 452 |
| Sse9I | AATT | 3 cut(s) | 183, 214, 261 |
| SsiI | CCGC | 1 cut(s) | 427 |
| StyD4I | CCNGG | 2 cut(s) | 526, 746 |
| StyI | CCWWGG | 1 cut(s) | 879 |
| TaaI | ACNGT | 4 cut(s) | 131, 364, 722, 889 |
| TaiI | ACGT | 1 cut(s) | 667 |
| TaqI | TCGA | 3 cut(s) | 233, 354, 1038 |
| TasI | AATT | 3 cut(s) | 183, 214, 261 |
| TauI | GCSGC | 1 cut(s) | 429 |
| TfiI | GAWTC | 2 cut(s) | 848, 906 |
| Tru1I | TTAA | 3 cut(s) | 516, 588, 803 |
| Tru9I | TTAA | 3 cut(s) | 516, 588, 803 |
| TscAI | CASTG | 1 cut(s) | 134 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 817 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 4 cut(s) | 477, 822, 840, 1119 |
| TspGWI | ACGGA | 2 cut(s) | 78, 133 |
| TspRI | CASTG | 1 cut(s) | 134 |
| VpaK11BI | GGWCC | 1 cut(s) | 770 |