Rw0G008210

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00301
OG0000085
Physical Location & Seq
Forward (+)
137552 .. 139570
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008210.1

Sequence Viewer

Length: 1887 bp
ATGGTTGAAAAGCCAGAGCCAATATCAGAGGATAATCAAGAACCGGTTGACGTCGATGCCTCTGCACCTCTTCCTTCAACATCAGCTGAATCATCAACTCCGAGGTGGAAGCATGATGTGTTTTTGAGTTTCAGGGGTGGAGACACTCGCAAAGGTATTGCATTCGAATTATACGATCGACTGCAAAACAGGAGAGGAATCAAAACATTCATGGATGACCAAGACCTTCAAGTAGGGGATGTTATTTCTCCCACTCTCCTAACGGCAATTAAAGAATCAAGGTTTGCAATTATTGTTCTCTCTCAAAACTATGCCACTTCCACTTGGTGTTTGGAGGAACTTAGAAACATTTGTGAATGCATGGAAGAAGACAACAACAGAATTCTGCCACTTTTTATTATCAGTTTCGGAGATGCGTTCACTAAGCATGAAAAATCTGGGCGACACAGATCAGAGAAGGTGCAGCAGTGGAGAGATGCTTTAAAAAAAGTGGCAAATTTCTCTGGGTGGCATACACTGAATTATAAAACTGAAAGAGAACTTTTGGATGCCATTGAAGAATCTTTGTGGAACAAATTACGACCTACTGTTAAAATATCCGTAGGAGGCTTTCAAGCATTTGAAACAACAAAACAAGCCATTGATAAGGTCATGAATGCGCTAAAAAATGATGAGGCCACTACCATTGGAGTCTACGGAATGGGGGGCGTTGGAAAGACGACAATGGTGAAATATGTTGGAGCACAAGCCCAAGAAAGTAGGCTTTTCAATCAAGTGATTATGGCTGTTGTATCCCAAAACCCCGACTTGATGAAAATTCAACAGACATTTGCAGAACTGCTGGGCTTTAAATTGGAGGAGAAGACAGAAATTGCAAGAGCCATTAAATTGAAGGAGAAGATAATGGGAGGTACTGGGATCCTCATAATCTTGGATGACATTTGGAAGAGAATAGAATTTTCAGACATTGGAATTCCGAACCACAACGAACTTCAAAATTGCAATTCCAAAGTCGTACTGACCACCAGAAGATCGAGAGTTTGTAAGATCATGGAGAGCCATGCAAAAATTCATCTCAGTATCTTATCAAAAGAAGATTCTTGGAGCTTATTTGTGAATGAAGCAGGGAAGTCTTTTGACAAATCTTCCAATTTCTATGATGTAGCGAGTGAGGTGGCAAGAGAATGCGCCGGTCTACCAGTTGCTTTGATAGCAGTTGCGAGGGCCCTTCGAGATGAAGGTTTGAACGAATGGAAAGAAGCTGCTCGACGACTAAAAGCGTCTCAACCTCCCATCCCTGAAGATGAGGGAGATGTGTTCAAATGCATGAAGTTAAGCTATGATTACTTGAAATCTGATGATTCCAAATCATGCTTCTTGCTTTGCTGCTTGTTCCCAGAAGATTATAATATCCCAATTGAATACTTGGTCAAATATGGAATTGGGAAAGGAATGTTTGAAGATTCCACCATGCTAGAAGCCCGAGCCACAACATATTTAGTGGTCAGGGACCTTAAAGATTCTAGCTTGCTTTTGGACGTTGGAGATGACCGATATGTAAGGATGCATGATGTCATTCGGGATATGGCAATCTTAATTTCGTTATCTGAAGGCCAGCGGTTGTTGGTGAAAGTTGGCAATGAATTGAAGAATTGGCCAAAGATTGATGCACACAAAGGCTACTCTGCAATCTCACTAATGCAGAACAAAATTTGCAAGCTACCCGAAGAGTTGGTATGTCCAAATCTCCAGATTTTATTACTACAACGCAGTGTTTCTCTAAATGAGATCCCAAAATGTTTTTTCGCAAGTCAAAATGAATTAAGAGTCTGTAAACACGAAAATCTGAAAGCAAACAAGATACAGACACGTGTACAAAAAAAATAA

Protein Analysis

628

Amino Acids

71.23

Weight (kDa)

6.6

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 37 - 198 5.5e-42 TIR domain
TIR_2 PF13676 40 - 134 3.3e-16 TIR domain
NB-ARC PF00931 211 - 377 1e-30 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 525, 1407
AatII GACGTC 1 cut(s) 54
AccI GTMKAC 2 cut(s) 693, 1195
AciI CCGC 1 cut(s) 1618
AclWI GGATC 3 cut(s) 913, 926, 1783
AcoI YGGCCR 1 cut(s) 1655
AcsI RAATTY 7 cut(s) 381, 496, 816, 956, 972, 1068, 1710
AcuI CTGAAG 2 cut(s) 1320, 1629
AcvI CACGTG 1 cut(s) 1871
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 3 cut(s) 913, 1017, 1875
AflIII ACRYGT 2 cut(s) 1868, 1870
AgeI ACCGGT 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 1358, 1390
AluBI AGCT 6 cut(s) 86, 1107, 1262, 1338, 1527, 1720
AluI AGCT 6 cut(s) 86, 1107, 1262, 1338, 1527, 1720
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 2 cut(s) 135, 1287
AlwI GGATC 3 cut(s) 913, 926, 1783
Ama87I CYCGRG 1 cut(s) 1482
AoxI GGCC 4 cut(s) 675, 1224, 1612, 1655
ApaI GGGCCC 1 cut(s) 1228
ApeKI GCWGC 3 cut(s) 463, 1262, 1386
ApoI RAATTY 7 cut(s) 381, 496, 816, 956, 972, 1068, 1710
AsiGI ACCGGT 1 cut(s) 43
AspLEI GCGC 2 cut(s) 661, 1190
AspS9I GGNCC 3 cut(s) 1224, 1225, 1510
AsuHPI GGTGA 2 cut(s) 739, 1639
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 1482
AvaII GGWCC 1 cut(s) 1510
BaeGI GKGCMC 1 cut(s) 1228
BalI TGGCCA 1 cut(s) 1657
BamHI GGATCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 1228
BbrPI CACGTG 1 cut(s) 1871
BbsI GAAGAC 2 cut(s) 375, 869
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 3 cut(s) 475, 1249, 1373
BccI CCATC 1 cut(s) 1301
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciVI GTATCC 1 cut(s) 802
BcoDI GTCTC 2 cut(s) 135, 1287
BfaI CTAG 2 cut(s) 1475, 1524
BfuI GTATCC 1 cut(s) 802
BisI GCNGC 3 cut(s) 464, 1263, 1387
BlsI GCNGC 3 cut(s) 465, 1264, 1388
Bme18I GGWCC 1 cut(s) 1510
BmeT110I CYCGRG 1 cut(s) 1482
BmgT120I GGNCC 3 cut(s) 1224, 1225, 1510
BmiI GGNNCC 3 cut(s) 920, 1226, 1511
BmrI ACTGGG 1 cut(s) 924
BmsI GCATC 6 cut(s) 46, 403, 466, 538, 1554, 1657
BmuI ACTGGG 1 cut(s) 924
BpiI GAAGAC 2 cut(s) 375, 869
BpmI CTGGAG 1 cut(s) 1733
Bpu14I TTCGAA 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 1871
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 43
Bse118I RCCGGY 2 cut(s) 43, 1190
Bse1I ACTGG 2 cut(s) 919, 1199
Bse3DI GCAATG 1 cut(s) 1645
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 6 cut(s) 220, 244, 553, 940, 1293, 1569
BseMI GCAATG 1 cut(s) 1645
BseMII CTCAG 1 cut(s) 1090
BseNI ACTGG 2 cut(s) 919, 1199
BseRI GAGGAG 1 cut(s) 872
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 3 cut(s) 475, 1249, 1373
BseYI CCCAGC 1 cut(s) 841
BsgI GTGCAG 2 cut(s) 48, 482
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 4 cut(s) 677, 1226, 1614, 1657
BshTI ACCGGT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 745
BsiHKCI CYCGRG 1 cut(s) 1482
BsiSI CCGG 2 cut(s) 44, 1191
BslFI GGGAC 1 cut(s) 1523
BsmAI GTCTC 2 cut(s) 135, 1287
BsmBI CGTCTC 1 cut(s) 1287
BsmFI GGGAC 1 cut(s) 1523
BsmI GAATGC 4 cut(s) 161, 362, 661, 1190
BsnI GGCC 4 cut(s) 677, 1226, 1614, 1657
BsoBI CYCGRG 1 cut(s) 1482
Bsp119I TTCGAA 1 cut(s) 165
Bsp120I GGGCCC 1 cut(s) 1224
Bsp1286I GDGCHC 2 cut(s) 745, 1228
Bsp1407I TGTACA 1 cut(s) 1873
Bsp143I GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
BspACI CCGC 1 cut(s) 1618
BspANI GGCC 4 cut(s) 677, 1226, 1614, 1657
BspCNI CTCAG 1 cut(s) 1089
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 3 cut(s) 920, 1226, 1511
BspPI GGATC 3 cut(s) 913, 926, 1783
BspT104I TTCGAA 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 1645
BsrFI RCCGGY 2 cut(s) 43, 1190
BsrGI TGTACA 1 cut(s) 1873
BsrI ACTGG 2 cut(s) 919, 1199
BssAI RCCGGY 2 cut(s) 43, 1190
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 3 cut(s) 75, 941, 1722
BstACI GRCGYC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 1873
BstBAI YACGTR 1 cut(s) 1871
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 1529, 1616, 1718
BstDEI CTNAG 3 cut(s) 341, 423, 1076
BstF5I GGATG 6 cut(s) 220, 244, 553, 940, 1293, 1569
BstHHI GCGC 2 cut(s) 661, 1190
BstKTI GATC 6 cut(s) 178, 452, 921, 1034, 1050, 1791
BstMAI GTCTC 2 cut(s) 135, 1287
BstMBI GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 1211
BstSLI GKGCMC 1 cut(s) 1228
BstV1I GCAGC 3 cut(s) 475, 1249, 1373
BstV2I GAAGAC 2 cut(s) 375, 869
BstX2I RGATCY 2 cut(s) 918, 1788
BstYI RGATCY 2 cut(s) 918, 1788
BsuI GTATCC 1 cut(s) 802
BsuRI GGCC 4 cut(s) 677, 1226, 1614, 1657
BtsCI GGATG 6 cut(s) 220, 244, 553, 940, 1293, 1569
BtsI GCAGTG 2 cut(s) 473, 1777
BtsIMutI CAGTG 3 cut(s) 473, 515, 1777
Cac8I GCNNGC 3 cut(s) 1529, 1616, 1718
CciI TCATGA 1 cut(s) 651
CfoI GCGC 2 cut(s) 661, 1190
Cfr10I RCCGGY 2 cut(s) 43, 1190
Cfr13I GGNCC 3 cut(s) 1224, 1225, 1510
CseI GACGC 1 cut(s) 1269
Csp6I GTAC 3 cut(s) 912, 1016, 1874
CspAI ACCGGT 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviQI GTAC 3 cut(s) 912, 1016, 1874
DdeI CTNAG 3 cut(s) 341, 423, 1076
DpnI GATC 6 cut(s) 177, 451, 920, 1033, 1049, 1790
DpnII GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
DraI TTTAAA 2 cut(s) 483, 850
DraIII CACNNNGTG 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 1655
Eam1104I CTCTTC 3 cut(s) 75, 941, 1722
EarI CTCTTC 3 cut(s) 75, 941, 1722
Eco24I GRGCYC 1 cut(s) 1228
Eco47I GGWCC 1 cut(s) 1510
Eco57I CTGAAG 2 cut(s) 1320, 1629
Eco72I CACGTG 1 cut(s) 1871
Eco88I CYCGRG 1 cut(s) 1482
EcoO109I RGGNCCY 3 cut(s) 1224, 1225, 1510
EcoRI GAATTC 2 cut(s) 381, 972
EcoT22I ATGCAT 3 cut(s) 362, 1328, 1569
EcoT38I GRGCYC 1 cut(s) 1228
Esp3I CGTCTC 1 cut(s) 1287
FaqI GGGAC 1 cut(s) 1523
FblI GTMKAC 2 cut(s) 693, 1195
Fnu4HI GCNGC 3 cut(s) 464, 1263, 1387
FokI GGATG 6 cut(s) 227, 251, 560, 947, 1280, 1576
FriOI GRGCYC 1 cut(s) 1228
Fsp4HI GCNGC 3 cut(s) 464, 1263, 1387
FspBI CTAG 2 cut(s) 1475, 1524
GlaI GCGC 2 cut(s) 660, 1189
GluI GCNGC 3 cut(s) 464, 1263, 1387
GsaI CCCAGC 1 cut(s) 845
GsuI CTGGAG 1 cut(s) 1733
HaeIII GGCC 4 cut(s) 677, 1226, 1614, 1657
HapII CCGG 2 cut(s) 44, 1191
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 2 cut(s) 661, 1190
Hin1I GRCGYC 1 cut(s) 51
Hin6I GCGC 2 cut(s) 659, 1188
HinP1I GCGC 2 cut(s) 659, 1188
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HpaII CCGG 2 cut(s) 44, 1191
HphI GGTGA 2 cut(s) 739, 1639
Hpy166II GTNNAC 6 cut(s) 49, 420, 694, 1196, 1835, 1874
Hpy188I TCNGA 9 cut(s) 28, 102, 410, 454, 964, 978, 1357, 1609, 1848
Hpy188III TCNNGA 6 cut(s) 38, 652, 1035, 1232, 1580, 1750
Hpy8I GTNNAC 6 cut(s) 49, 420, 694, 1196, 1835, 1874
Hpy99I CGWCG 2 cut(s) 56, 1272
HpyAV CCTTC 7 cut(s) 84, 236, 451, 886, 1232, 1238, 1604
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 3 cut(s) 51, 1539, 1870
HpyF10VI GCNNNNNNNGC 1 cut(s) 1211
HpyF3I CTNAG 3 cut(s) 341, 423, 1076
HpySE526I ACGT 3 cut(s) 51, 1539, 1870
Hsp92I GRCGYC 1 cut(s) 51
HspAI GCGC 2 cut(s) 659, 1188
Kzo9I GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
LmnI GCTCC 2 cut(s) 740, 1104
Lsp1109I GCAGC 3 cut(s) 475, 1249, 1373
LweI GCATC 6 cut(s) 46, 403, 466, 538, 1554, 1657
MaeI CTAG 2 cut(s) 1475, 1524
MaeII ACGT 3 cut(s) 51, 1539, 1870
MalI GATC 6 cut(s) 177, 451, 920, 1033, 1049, 1790
MboI GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
MfeI CAATTG 1 cut(s) 1416
MflI RGATCY 2 cut(s) 918, 1788
MhlI GDGCHC 2 cut(s) 745, 1228
MlsI TGGCCA 1 cut(s) 1657
MluNI TGGCCA 1 cut(s) 1657
MlyI GAGTC 2 cut(s) 699, 1836
MmeI TCCRAC 3 cut(s) 691, 718, 1522
Mox20I TGGCCA 1 cut(s) 1657
Mph1103I ATGCAT 3 cut(s) 362, 1328, 1569
MscI TGGCCA 1 cut(s) 1657
MseI TTAA 9 cut(s) 270, 482, 591, 849, 885, 1334, 1515, 1595, 1823
Msp20I TGGCCA 1 cut(s) 1657
MspA1I CMGCKG 2 cut(s) 86, 1618
MspI CCGG 2 cut(s) 44, 1191
MunI CAATTG 1 cut(s) 1416
Mva1269I GAATGC 4 cut(s) 161, 362, 661, 1190
MwoI GCNNNNNNNGC 1 cut(s) 1211
NdeII GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
NlaIV GGNNCC 3 cut(s) 920, 1226, 1511
NsiI ATGCAT 3 cut(s) 362, 1328, 1569
NspV TTCGAA 1 cut(s) 165
PagI TCATGA 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 4 cut(s) 161, 362, 661, 1190
PfeI GAWTC 8 cut(s) 89, 198, 275, 560, 1097, 1361, 1463, 1520
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 3 cut(s) 465, 1264, 1388
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 2 cut(s) 698, 1835
PmaCI CACGTG 1 cut(s) 1871
PmlI CACGTG 1 cut(s) 1871
PpsI GAGTC 2 cut(s) 698, 1835
Ppu21I YACGTR 1 cut(s) 1871
PpuMI RGGWCCY 1 cut(s) 1510
PsiI TTATAA 2 cut(s) 525, 1407
Psp5II RGGWCCY 1 cut(s) 1510
PspCI CACGTG 1 cut(s) 1871
PspFI CCCAGC 1 cut(s) 841
PspN4I GGNNCC 3 cut(s) 920, 1226, 1511
PspOMI GGGCCC 1 cut(s) 1224
PspPI GGNCC 3 cut(s) 1224, 1225, 1510
PspPPI RGGWCCY 1 cut(s) 1510
PsuI RGATCY 2 cut(s) 918, 1788
PvuI CGATCG 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 913, 1017, 1875
RsaNI GTAC 3 cut(s) 912, 1016, 1874
SaqAI TTAA 9 cut(s) 270, 482, 591, 849, 885, 1334, 1515, 1595, 1823
SatI GCNGC 3 cut(s) 464, 1263, 1387
Sau3AI GATC 6 cut(s) 175, 449, 918, 1031, 1047, 1788
Sau96I GGNCC 3 cut(s) 1224, 1225, 1510
SchI GAGTC 2 cut(s) 699, 1836
SduI GDGCHC 2 cut(s) 745, 1228
SfaNI GCATC 6 cut(s) 46, 403, 466, 538, 1554, 1657
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 1510
SsiI CCGC 1 cut(s) 1618
SspMI CTAG 2 cut(s) 1475, 1524
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 3 cut(s) 54, 1542, 1873
TaqI TCGA 6 cut(s) 54, 165, 178, 1034, 1231, 1267
TaqII GACCGA 1 cut(s) 1566
TatI WGTACW 1 cut(s) 1873
TfiI GAWTC 8 cut(s) 89, 198, 275, 560, 1097, 1361, 1463, 1520
Tru1I TTAA 9 cut(s) 270, 482, 591, 849, 885, 1334, 1515, 1595, 1823
Tru9I TTAA 9 cut(s) 270, 482, 591, 849, 885, 1334, 1515, 1595, 1823
TscAI CASTG 3 cut(s) 473, 522, 1777
TseI GCWGC 3 cut(s) 463, 1262, 1386
TspGWI ACGGA 2 cut(s) 589, 711
TspRI CASTG 3 cut(s) 473, 522, 1777
VpaK11BI GGWCC 1 cut(s) 1510
XapI RAATTY 7 cut(s) 381, 496, 816, 956, 972, 1068, 1710
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 693, 1195
XspI CTAG 2 cut(s) 1475, 1524
ZraI GACGTC 1 cut(s) 52
Zsp2I ATGCAT 3 cut(s) 362, 1328, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.