RchiOBHm_Chr5g0079791

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000085
Physical Location & Seq
Reverse (-)
85543577 .. 85557927
14351 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35416

Sequence Viewer

Length: 10296 bp
ATGTCGAGCAGCAATTTTGAAGCATTTGAATCAACAAGAAAAGCCATGAATGAGCTGATGGAGGCATTAGAAGATGATGAGGTCGCTGCCATTGGGGTCTATGGAATGGGAGGGGTTGGGAAGACAACCATGGTGAAACATTTCGGTGCACAAGCCCAAAAAATGGGGCTTTTTGATCGTGTGATTATGGCTGTTGTATCCCAAGCCCCAGATATAAGAAATATTCAAGGCACACTTGCGGATCTGCTGGGCTTGAAATTGGTGGAGGAGTCAGAAAGTGGACGAGCCGATAGATTGCAGACGGAGATGCTTAGAAGAAATAAGATCCTTATAATCTTAGACGACATTTGGAATACACTTGACTTGTCAAGCATTGGAATTCCCAGCTACAACGAGCTTCAAATATGCAATTCCAAACTGCTATTCACCACAAGGAGATCGAATATTTGCCATACCATGGAGAGCCAAGCAAAAATTCATCTCAATATCTTATCAGAAGATGATGCTTGGAACTTGTTTTTGAAGAAGGCAAGAAGGTCTTTTCAAAAGTCTAGCCCTTTCTATGAAGTAGCCAGAAAGGTAGCTAAAGAATGTGCTGGTCTCCCAGTGGCATTGATTGCAGTTGCGAGGGCACTTGGAGATAAAGAGCTTGAAGACTGGAAAGAAGCAGCCCGACAACTTGAGATGTCTCAACCTGCCAACCTTGACGAGGAGAAAGATTGGTCGATGGATGCGGACGAAGGCTACTCAGCAATCTCACTAATCGAGAGCAACATTTACAAGCTTCCCAGCAAGTTGGTATGTTCAAAACTTCAGAATTTATTGCTACAAAAAAATGCTGATATAAGAGAGATCCCAAGAACCTTTTCTCAAAGTCTCAATGATTTAAGGGTCTTAGATCTTAGCCACACTGGCATTTCATCATTGCCCCCATCATTCAGTCTCCTAACCAGACTCGAATCTTTGTGTTTAGATGATTGCAAGTCCATGATTGACATATCCTTACTTGGAAAACTGAAAGAGCTTAAGATTCTTAGTATGAGACGCTGTTACTCTATTAAGAAATTTCCAAAAGAGATTGGAAATTTGACGAATTTAAGAATATTGGACTTGACTGAAACTTGTTTTGAGACAGTTCCCTCTCATGTGATATCAAGGTTGTATAGATTGGAAGAACTGTACATGAGTTATTTTGGCAAGTGGGGTAGTAAAGTTGAGGGAGGCTTCTTGAGTTTTAAAATGAAAAATGCTAGCTTTGATGAGTTAATTGGCTTGTCAAGTTTAAACACTTTGCAGGTTGCCATATGTGGTGCAGAATGCTTGCCTCAAAACGTTGAGGTCAATCCAAATTGGGATAGGTTTTATATAATTATCCAAAGATACGGCACGATGAGAGTACCCACTGGGGGCAATTGGGGCATTTATGATGAGGGCTTTCCAAATCGTTGTTCAAGAACATTGATTATGGACGAAACCATGAATAACTTACCCGATTGGTTCATCAGTGTGGTGACAGAAAAAACAGAGGATTTATGGTACACAGGTCGCCATGGTAACCTTCTCGAGGAACACGACCGTGGGAGATTACATGGACTCAAGTATCTGCGTATAGGTTCTTCCGAATATGCCAAAGCCAAAGTGTTGTTCAACACAATAACATGGACTAGGGTGTCAAATGAACCTGTGTTTGAGAACTTGAAAGAGTTGGTCATCTCCAGGAATCTCTTGAAGGAGCTATGTGTCGGTGAATTACCACCTGGCTCTCTACGTAATCTTGAGAGATTGATGGTGGATGATTGTGTTAGTTTGGTGAAACCGCTTTTATCATCAAAGTTGTTGCACAGACTACAGAGTCTGAAAAATCTAGCTTGTTCTGCGTTTTCGAGAATGAAATATGTGTTTGGATTTGAAGGGCATGAACCACAACACCTTGTCTTGACGTGGCGGCTGAGAATGATTTCATTGAGAAACATGCACGGCTTAATAAACATATGGGATGGTCTTGCTCCATCTGGAATCTTCCAGAGTCTCAAAATCTTTTCCTTGGTTGATTGCCCGAAACTGGAATATCTCTTCACATCTGATGTAGCTCGATGTCTTTTGCAATTGGAAGAACTTAGGGTAGAGTGTTGCTGTAGCCTGGACAGAATAATTGAAGCAAGTGAGGAAACAGAGAGCAACAAGATCGTTCTTCCACAGTTGAAGAACTTGGTTTTAGAACGTCTTCCAGAGCTCATAAGGTTGTCCAGTACTAGCAGCAGTACTATTGATATTGAAATCGAGTGGCCTTCATTGGAACACTTGCATGTCTCTGACTGCCCCCAGTTTTCAATCTCTGCTTCTGAGTTCAACAGCATCAACCAAGTCCAACTAAATGATTACCGACCTATGGGCACACTATGGATCGACAGTAAAGCACGTCGCTCACACTTTCCAAAATATATGAGTCCGGGCAGAAGGGAACGGACTCAAACTGAATTAAAGGCGATGGTAGCTCATAGAAGTAACAGAGAGAGAATTGAGCCTACAATCTTCCGAGAAACTGCTGCATCTCTTCCTTCATCACTTGAATCATCATCATCAGCTCGTCGCTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAGGGTATCACATCTGATCTATACCATCGACTGCAGGGGAGGGGAATTAAAACATTCATGGATGATCGAGATCTTGAAGTTGGAGATGCTGTTTCTCCGACTCTCCTAAAGACAATTGAAGAATCAAGGTTTGCAATTGTTGTTCTCTCGCGAGACTACGCTTCTTCTACTTGGTGTTTGGAGGAACTTGCAAAGATCTGTGAGTGGATGGAAGATCAGAGCAGAATTCTTCCACTCTTTTATGACGTGGAGCCCTCTGTTGTTCGATATCAGAAGAAAAGTTTCGAAGAAGCTTTCTCTAAACATGAAACCTCTGGGCGACACAAATCGGAGAAGGTGAAGCAATGGAGAGATGCTTTAAACAAAGTGGCCACTTTCTCTGGGTGGAATACGCAAGATTTTAAGACTGTGAGAGAACTTGTCGAATCCATTGTGGAACTTCTCAGTAGTAAAGTAGTACCTGATGCAATTGAGTCTACAGGAGATTTTGAAGCATTTGAAGCAACAAGACAAGCCATGGATGATGTTATGAAGGCGCTAAAAGATGACCAGATCACTGCTGTTGGTGTCTACGGCATGGGCGGAGTTGGAAAGACAAGCATGGTGAGACATGTAGCTGCACAAGCCTGCAAAAATGGCACTTTCAACCATTGGATTATGGCTGCCATATCCCAAAGCCCTGACTTGAGAAAAATTCAAGTTACATTAGCAGATTTGTTGGGTTTTAGATTTGAGGAGGAGACAGAAGGTGGAAGAGCTGATAGGTTGCATAAGGAGGTAATGAGAAGAGAAAAACTCCTGATAATCTTGGACGATGTTCAGGACAGACCAGAGTTGTCAAGCATAGGGATTCCCAGCTACAAGCAGCTTAAGACGTGCAAATCCAAAGTCGTACTCACCACACGGGGAAGTCATGTCTGTTATGTCATGAATTGCCAAGCAAGCATTCGTCTCAGTATCTTATCAGAACAAGATTCTTGGACCTTGTTTGTGAGAAATGCAGGGGTAGCGAAGAAGAAGATTCTTGAATCGACCACTTTTGAGGATGTGGCAAGGAGAGTAGCTGGACAATGCAGGGGTCTACCCATTGCATTGACAGCAGTTGCAAGGGCACTCAGAGATAAAGATGAGGCAGAATGGCAAAAAGCAGCTCAAAGACTAGAGAAGTCGCTATCTGAAACCGTTAAGGCTGAGGAAAATGCCTTCGAATGTATAAAATTTAGTTTTGATTACTTGAAAGATGAGCATTCCAAGTCATGCTTCTTGCTTTGTTGCCTATACCCAGAAGGCCATGACATACCGGTAGAAAACTTATTCAAGGATGCAATTGCGAAAGGATTGTTTCGAGATGCCGAAACAATTGAAGAAGCCAGAGTAACAGCAGATTCAGTGGTCAAGGACCTGAAAGATTCTAGCTTGCTTTTGGATAGCGAGAAAAATGGATGTGTAAAGATGCATGATGTCATCTGGGATACAGCCCTGAACATTGCAAAATCTGAATATGGGTTTTTGGTAACCACTACTGAAATTGAGCCTACAATCTGCCGAGAAACTGCTGCATCTCTTCCTTCATCACTTGAATCATCATCATCAGCTCGTCGCTGGAAGTCTGATGTGTTTTTGAGTTTCAGGGGTGCTGACACTCGCAAGGGTATCACATCTGATCTATACAAGCGACTGCAGGGGAGGGGAATTAAAACATTCATGGATGATTCAGATCTTCAAGTCGGGGATGTGATTTCTCCCGCTCTCCTAAAGGCAATTGAAGAATCAAGGTTTGCAATCATTGTTCTCTCGCAAAAATATGCTTCTTCTACTTGGTGTTTGGAGGAACTTACAAAGATCTGTGAGTGTATGGAAGACAACAACAGAATTCTGCCACTTTTTTATGGTGTGGAACCCTCTGATGTACGGTACCGGAACAGGAGTTTCGGAGAAGCTTTTGATAAGCATTTAAGCTCTGGGAGACAGACAGCAGACAAGTTGCAGCGGTGGAATGATGCTTTAAACAAAGTGGCCAGTTTCTCTGGCTGGAATTCGCAGAATTATAAGACTGAGAGAGAACTTGTTGACGAAATTGTGGAATTTCTCGGCAGTAAAGTACTACCACCTGATGCAATTGAGTCCACAGGGGATTTTGAAGAATATGAAGCAACAGGACAAGCCATGGATAAGGTTATGGAGGCGCTAACAGAAGACGAGGTCACTGCCGTTGGTGTCTACGGCATGGGCGGCGTTGGAAAGACAATCATGGTGAAACATGTAGCTGCACAAGCCTGCAAAAATGGTACTTTTAACCATTGGATTATGGTTGCCATAACCCAAAGCCCCAACGTTAGAAAAATTCAAGGTACATTAGCAGATTTGTGGGGCGTTAAATTGGAGGAGGAGACAGAAGGTGGAAGAGCTAACAGTTTGCGTAAGGAGATAATGAGAAGAGTAAGACTCCTGATAATCTTGGACGATGTTTGGAAGAGAATGGAGTTGTCAAAGATAGGGATCCCCAGCTACAAGGAGCTTCAAAAGTGCAAGTCCAAAGTCCTACTCACCACAAGGAGATTGAATGTCTGTGATGCCATGCGATGCCAAAGAAAGATCACCCTCAGTACCCTATCAGAAGAAGATTCTTGGAACTTGTTTGTTAGAAATGCTATGTCGTTTGAATCGACCAATTTTGAGAATGTAGCGAGGAAGGTGGCTAGAGAATGTGCTGGTCTCCCAATTGCGGTGATAGAAGTTGCAAGGGCACTTAAAGATAAAGAGCTGGCAGAATGGGAAGAAGCAGCTCAACGACTAGAGAATTCGCAAATTGCCGACATTGACGATGGGGGATTCAAATGTATAAAATTAAGCTATGATTACTTGAAAGATGAAGATACCAAGTCATGCTTCTTGCTTTGTTGCCTATTTCCTGAAGACTATGACATCCCAATAGGAGACTTGTTCAAGTATGCGATCGGGAAAGGATTATTTCGAGATGCCGACACAATCCAAGAAGCCAGAGTTATAGCAGATTCAGTGGTCAGGTACCTGAAAGATTCTAGCTTGCTTTTGGATAGTGAGAAAAAGGGATGTGTAAGGATGCATGCTGTCATTCGGGATACCGCCCTGAATATTGCAAAATCTGAAGGTAGGCATAGTTTTTTGGTAAAAGCTGGCTGTGGTTTAAAGAGCTGGCCATGTCAAGTACATGAAGGCTACTCTGCAATCTCTTTAATGAACAATGATATCCAGAAGCTACCCGGAGCGCTGATATGTCCAAAACTCCAGATTTTATTACTACAGCAGAATGCTGAGTTAAATGAGATCCCAGAAACTTTTTGCCAGAGTCCTAGTGAATTAAGGGTCTTAGACCTTAGCCTCACCAGCATTGCAGTACTTCCTCAATCATTCAGTCTCCTAATGAACCTCCAAGCTTTATATCTAGATTTTTGCCAGAAACTGATTGACTTTTCCGTACTTGGAAAACTAATGAAGCTTGAGATTCTTAGCATGAGAGGAAGTGTTCTGAAAGAATTGTCGAGAGAAATAGGGAATCTGATCAATCTAAGGATGCTGGACATTACTGATGGAATTATTGGCAAAATTCCATCGAAAGTGATATCACAGTTGCATGGATTAGAAGAACTGTACTTGCCATTTCAATTTGGGGATTGGGTCAGTAAGGTTGAAGGAGAAGGAGAAGAAACGGATATTGGCTTTGGTGAGGTAACTGGCTTGTCACGTCTAAGTATTTTGAAGGTTTCCATATCTGCAAAGTGCATCCCTGAAGAGCTTGAGTTTTATCCCAATTGGTTGTCCTTTGATATATGTATTAGTGGAGATACAAGCAGCAGAGACATTATGAGTGACATAAGTAATCAAAGCTCTCAATATAGTGATAAAGTTTCAAGATCCTTGAGTCTTGACACAAGAATTAATGCCTTACCAGCTTGGTTTGTCGATGAGGTAACAGTCAAAACAGAGAAGCTACTGTATGTAAAGTGCAAATGGTTAAATAACATTCTTGTTGAATATCACCATGGGAGGTTACACATGCTGAAACATCTCTCTATTATTGGTCACAGTGAGAGCTTGGAAGAGCTTATGAATGCTATAACATGGGTTCCAGTTAAACCTGTGTTTGAGAACTTGGAAGAGTTGCATTTGGAGAGTGTGACTTCTTTGAAAGAGTTATGTGTTGGAAAATTACCACCTGGGTCTCTATACAATCTGAAGTTATTGAAGGTCCGTTGTTGTCCTAACTTGGGGAATATTCTTTTACCATCAAAATTGTTACAGAGATTGCCAAATCTGGAGAACATAATCTGTAAGGATATGTCTAGGCTGGAACATGTGTTTGGATGTCAAGGGTTTGAGCCAGAGCAATCAAAACTGAGAGAGATGACATTTATCAATCTACCTGCTCTAAGAAACATATGTAATGGTCTGGCTCCACGTGCAATGTTCCAAGCTCTTAAAAGTTTGTTCATTTATCATTGCACCTTTCTGAGATGTCTCTTCTCGTTTGATACTGCTCAATTTCTTTTTCAATTGGAAGACCTTTTTGTAGACAGTTGCCCTTTATTGGAAAGACTAATTGAAGTACGCAAGGAAAAAGAAAACAAGAAGATCATTCTTCCAAAATTGAAGAACTTGGTTTTAGAGAAACTTCCTATGCTGTACAGTGGAAGTGCCACTATTAATATCAAGTGTCCTTCCTTGGAACACTTGAATGTGAAGGAGTGCCCCCAGTTTACAGCCTCTGCTTCTGACTTCCAGAGTAAGAACCAAGTCCTACTCAACGATAAGTTACATAACTTCAGTCTACTAGGCAGAAGGACTGAAAGACAACTCGAAGCCGTTGCGGAATCTGTGTCCAGTACAATACAACCAATTGCAACTGAGTTTACAATGTCCATGGGAGATTTTCAAGCATTTGAATCAAGAAGACTAGCCATGAATGATGTTATGAAGGCACTTACAGATGATGAGATCACCGCCATTGGAGTCTACGGAAAGGGAGGCGTTGGAAAAACAACTATGGTTGAACATGTTAGTGAAGAAGTTAAGAATAATTGGATGTTCCATCATGTGATCACGGCTGTTGTATCCAAAAGCCCTGACTTGAGAAAAATTCAAGGCACATTGGCAGATATGTTGGGCTGTATATTTGAGGAGGAGACAGAAATTGGAAGATCCCGTAGATTGATGCAGAGGATAAGGAGAGGAAATAGGATCCTTATAATCTTGGAAGACATTTGGGAGAGAATAAATTTGTCAAATGTAGGAATTCCCAGCTACCATGAGCTTCAAAGATGCAATTCCAAAGTCCTCATCACCACGAGGAGAGAGAATGTCTGTCATGCCATGAAGTGCCAATCAAACATTTTTCTTGATGTCTTATCAGAAGAAGATTCTTGGACCTTGTTTGTGAACAGAGCTAGAATGCCTTTTGAATTGACCAATTTTCATGATGTTGCAAGGAAGGTAGCTAAAGAATGTGCTGGTCTTCCAGTTGCACTGATACCAGTTGCAAAGGCACTTCGTGATAAGTGTTTGGATGACTGGAAGGAAGCAGCTGGACGATTAAAGGCTTCTCAACCTGCCAACCATGAAGATGGGGAAGTTGTATTCAATTGTATAAAATTAAGCTATGATTACTTAACATCTGATGATGCCCAGTTATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGACTATGATATCCAAATTGAAGACTTGCTAAAGTATGGGATGGGGAAAGGCTTGTTTCAAGATTCCAGCACAATGCAAGATGCCCGAGCTAGTGCACATTCGGTGGTCAAGTCCCTTAGAGATTGTGGCTTGCTTTTGGAATCTGAACGGGACGGATGTGTAAAGATGCATGATGTCATTCGGGATGCAGCCCTAAGGATTTCATCTTCGGGGGATGGCCCATTGTTTTTTGTACAAGCTGGTTGTCAATTAAAGGAATGGCCAAGTAGTAGTCCACAAAAAGGCTGCTCGGCTATCTCACTAATTAGGAATAAAATCTGCAAGCTTCCTAAAAGGTTCGTATGTTCAAAACTCCTCATTCTGTTTATGCAAAGTAATGTTTACTTGGATGAGGTACCAGACTGTTTCTTTGAAAATCTGAAGGAGTTGAGGGTATTAGATCTAAGCCGAACCAGAATTTCGTTACTACCCACATCATTTGATGATTTGATCAACCTCCACACCTTGTATCTAGATGGTTGCTTGTCAATCATAAATAACATATCCATACTTGGAAAATTGAAGAAACTTAAGATTCTTAGTATGAGAGAACTTCCTCTTGTGGAAATGCCGAAAGAAATTGGAGATTTGAGCCATCTAAGGATGTTAGACGTCACTGGTGATTATGTGGATAATGTTCCATCTGAAGTGATATGCAACCTTAATTTGTTAGAGGAACTATACATGCAGTGTAATTTTGCAGACTGGGGGAGTAAAGTTGAGGGAGCAGGAGAAGAAAATATTGCTGCATTTGATGAGATAACTGGCTTGTCAAATCTAAATGTTTTGAAGGTTTTCATATCTGATGCTAAATGTTTGCCTGAAGATGTGGAGGTTGAGCCAAATTGGTTAAACTTTGATATTTGTATCAGCAGAGACCCATCAATCAGAAAAGTGTCCTTGGTTTCAAGTTCTTCACCTGCTTTTACAAGAGCCTTGACTCTTGATACAACCATCAATGCCTTACCGGGTTGGTTTATCAATGTGGTGACGATGAAAGCAGAGAAACTAAAGTACATATTGTGTTGGGGATTAGATAACATTCTTGTGGAATATGACTGTGGGAGATTGCATGAACTGAAGTATTTATCTGTTATTCGGCCCAATGCGAACTTGAAAGTGTTGATGAACACAGTAACTCGCTTTCGGAATGAACCGGTGCTTCAGAACTTGGAAGAGTTGCATCTCATTCAAGTGCATTGCCTGAAGGAGTTATGTGTTGGTGAATTGCCGCCTGGGTCTCTATGCAATCTTAGGTTACTGAAGGTGAAACATTGTTATGAATTGGTGGATGCACTTCTACCGTCAGGGTTGCTGCAGAGATTACAAAATCTGGATAAAGTTATTTGCGAAGAGATGGATGAATTGGAATACGTTTTTGGATGTGAAGGGCTTAAGCCAGAACAAATGATATTGACACAATTGAAAGAGATGAGATTGGAGAATCTAAGGAGACTAATAAAGATATGGAATGGTCTTGCTCCTTGCGCAATCTTTCAGAATCTTCAGAGTTTGGTAGTTTCCGGGTGCTACAAGCTGAAAAATCTCTTCTCGGCTGATGTAGCTCAATGTCTTTTGCACTTGAAAGATATTTCAGTAGAGCTATGCCCAATATTGGACAACGTTATTGAAGCAAGTAAGGAAACAGTGGACAACCAGATTGTTTTTCCAAAATTGAAGAACTTGGCTTTGATAAAGCTTCCACAGCTCACAAGGTTCTGCGGTGGTACTGGATGTGTTATTAAGTGCCCTTTATTGGAATACTTGTATGTGGATAGGTGCCCCCGGTTTCCAACATTTGACTTCCACAGCAGGAACGAAGTCCAACGAAATCATCCACAACATTTGGACATTGTACAGAGAAGAGAAACTGAGAAAGCAGAGAAGATGAATGGAAGAAGAAACAACCGAGAGATGGAATAA

Protein Analysis

3431

Amino Acids

388.72

Weight (kDa)

5.96

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 14 - 178 1.3e-30 NB-ARC domain
LRR_8 PF13855 270 - 327 2e-06 Leucine rich repeat
LRR_14 PF23598 274 - 346 8.6e-07 Leucine-rich repeat region
LRR_14 PF23598 322 - 622 7.2e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 566 - 711 6.8e-22 Plant disease resistance protein RPS2-like, leucine-rich repeats
TIR PF01582 866 - 1032 6.9e-47 TIR domain
TIR_2 PF13676 869 - 966 3.3e-15 TIR domain
NB-ARC PF00931 1050 - 1214 2.9e-25 NB-ARC domain
TIR PF01582 1417 - 1576 4.1e-45 TIR domain
TIR_2 PF13676 1418 - 1513 1.6e-15 TIR domain
NB-ARC PF00931 1600 - 1765 3.2e-31 NB-ARC domain
LRR_8 PF13855 1966 - 2025 1.2e-06 Leucine rich repeat
LRR_14 PF23598 2026 - 2127 7.9e-07 Leucine-rich repeat region
LRR_RPS2 PF23247 2257 - 2354 3.5e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 2358 - 2459 4.1e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
NB-ARC PF00931 2526 - 2687 1e-26 NB-ARC domain
LRR_8 PF13855 2903 - 2952 1.4e-06 Leucine rich repeat
LRR_14 PF23598 2951 - 3022 4.5e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 3182 - 3327 6.1e-26 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000085)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05721 FvH4_2g05721 FvH4_3g35820 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35890 FvH4_3g35920 FvH4_3g38670 FvH4_3g43650 FvH4_3g43650 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44000 FvH4_3g44070 FvH4_5g01271 FvH4_5g02970 FvH4_5g02970 FvH4_5g02970 FvH4_5g27640 FvH4_5g27640 FvH4_5g27640 FvH4_6g05393 FvH4_6g52372 FvH4_7g06680 FvH4_7g12671 FvH4_7g13640 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31110 FvH4_7g31510
malus_domestica MD09G1227900.v1.1 MD11G1019800.v1.1 MD11G1020500.v1.1
prunus_persica Prupe.1G542800_v2.0.a1 Prupe.1G542800_v2.0.a1
pyrus_communis pycom11g01460 pycom11g01490 pycom11g01530 pycom11g01570 pycom15g35490
rosa_chinensis RchiOBHm_Chr1g0353711 RchiOBHm_Chr3g0473211 RchiOBHm_Chr3g0473291 RchiOBHm_Chr3g0473341 RchiOBHm_Chr3g0473381 RchiOBHm_Chr3g0473391 RchiOBHm_Chr3g0473441 RchiOBHm_Chr3g0473481 RchiOBHm_Chr3g0473531 RchiOBHm_Chr3g0473561 RchiOBHm_Chr3g0473571 RchiOBHm_Chr3g0483491 RchiOBHm_Chr3g0488681 RchiOBHm_Chr5g0059311 RchiOBHm_Chr5g0061291 RchiOBHm_Chr5g0061301 RchiOBHm_Chr5g0061331 RchiOBHm_Chr5g0064081 RchiOBHm_Chr5g0064111 RchiOBHm_Chr5g0064151 RchiOBHm_Chr5g0064171 RchiOBHm_Chr5g0069721 RchiOBHm_Chr5g0069731 RchiOBHm_Chr5g0069741 RchiOBHm_Chr5g0078251 RchiOBHm_Chr5g0078301 RchiOBHm_Chr5g0079511 RchiOBHm_Chr5g0079791 RchiOBHm_Chr5g0079811 RchiOBHm_Chr5g0079861 RchiOBHm_Chr5g0079881 RchiOBHm_Chr5g0080241 RchiOBHm_Chr5g0080281 RchiOBHm_Chr5g0080371 RchiOBHm_Chr5g0080671 RchiOBHm_Chr6g0256601 RchiOBHm_Chr6g0274791 RchiOBHm_Chr7g0221971 RchiOBHm_Chr7g0221981
rosa_laevigata RLG00000002106 RLG00000013523 RLG00000014806 RLG00000024010 RLG00000035451 RLG00000035455 RLG00000035464 RLG00000035705 RLG00000036094 RLG00000036817 RLG00000036825 RLG00000036826 RLG00000036848
rosa_multiflora Rmu_co8200400.1_g000001 Rmu_co8473147.1_g000001 Rmu_sc0000394.1_g000030 Rmu_sc0000555.1_g000030 Rmu_sc0000595.1_g000002 Rmu_sc0000595.1_g000006 Rmu_sc0000595.1_g000029 Rmu_sc0000689.1_g000018 Rmu_sc0000689.1_g000032 Rmu_sc0000689.1_g000041 Rmu_sc0000738.1_g000025 Rmu_sc0000826.1_g000016 Rmu_sc0000908.1_g000016 Rmu_sc0000908.1_g000019 Rmu_sc0000908.1_g000021 Rmu_sc0001208.1_g000087 Rmu_sc0001639.1_g000004 Rmu_sc0002075.1_g000004 Rmu_sc0002075.1_g000009 Rmu_sc0002187.1_g000042 Rmu_sc0002187.1_g000043 Rmu_sc0002187.1_g000060 Rmu_sc0002513.1_g000025 Rmu_sc0002983.1_g000008 Rmu_sc0003012.1_g000004 Rmu_sc0003069.1_g000019 Rmu_sc0003069.1_g000020 Rmu_sc0003069.1_g000047 Rmu_sc0003069.1_g000051 Rmu_sc0003069.1_g000053 Rmu_sc0003131.1_g000014 Rmu_sc0003514.1_g000003 Rmu_sc0003547.1_g000006 Rmu_sc0003547.1_g000008 Rmu_sc0004325.1_g000021 Rmu_sc0004482.1_g000004 Rmu_sc0004482.1_g000022 Rmu_sc0005006.1_g000004 Rmu_sc0005006.1_g000009 Rmu_sc0005006.1_g000010 Rmu_sc0005194.1_g000002 Rmu_sc0005194.1_g000003 Rmu_sc0005834.1_g000002 Rmu_sc0005947.1_g000023 Rmu_sc0006792.1_g000026 Rmu_sc0007612.1_g000001 Rmu_sc0007793.1_g000024 Rmu_sc0007793.1_g000025 Rmu_sc0008050.1_g000015 Rmu_sc0008336.1_g000003 Rmu_sc0010248.1_g000002 Rmu_sc0011921.1_g000001 Rmu_sc0011921.1_g000006 Rmu_sc0012138.1_g000001 Rmu_sc0016164.1_g000015 Rmu_sc0018807.1_g000005 Rmu_sc0030948.1_g000001 Rmu_sc0042587.1_g000001 Rmu_ssc0000170.1_g000020 Rmu_ssc0000170.1_g000026 Rmu_ssc0000170.1_g000029
rosa_roxburghii Rroxscaffold_1G00003040 Rroxscaffold_1G00003080 Rroxscaffold_1G00003430 Rroxscaffold_1G00003490 Rroxscaffold_1G00011370 Rroxscaffold_1G00016780 Rroxscaffold_1G00019390 Rroxscaffold_1G00019400 Rroxscaffold_1G00019420 Rroxscaffold_1G00021170 Rroxscaffold_3G00237530 Rroxscaffold_3G00246470 Rroxscaffold_4G00301730 Rroxscaffold_4G00309300 Rroxscaffold_6G00398250 Rroxscaffold_6G00398270 Rroxscaffold_6G00398280 Rroxscaffold_6G00408070 Rroxscaffold_7G00193940 Rroxscaffold_7G00209570
rosa_rugosa Rorug01G0237100 Rorug03G0098200 Rorug03G0132200 Rorug03G0132400 Rorug03G0132500 Rorug03G0132500 Rorug03G0132500 Rorug03G0132700 Rorug03G0132800 Rorug03G0205900 Rorug03G0206100 Rorug03G0206100 Rorug03G0206300 Rorug03G0206400 Rorug03G0206400 Rorug03G0240700 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug03G0241800 Rorug05G0322400 Rorug05G0339300 Rorug05G0339500 Rorug05G0362200 Rorug05G0362300 Rorug05G0362400 Rorug05G0362600 Rorug05G0362700 Rorug05G0362800 Rorug05G0363100 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0399200 Rorug05G0459900 Rorug05G0464600 Rorug05G0465000 Rorug05G0465100 Rorug05G0465200 Rorug05G0466000 Rorug05G0466300 Rorug05G0466400 Rorug05G0466500 Rorug05G0466600 Rorug05G0466700 Rorug05G0466700 Rorug05G0466700 Rorug05G0466800 Rorug05G0466900 Rorug05G0468100 Rorug05G0562200 Rorug05G0562300 Rorug06G0084400 Rorug06G0084500 Rorug06G0084500 Rorug06G0084600 Rorug07G0136400 Rorug07G0204500 Rorug07G0204600 Rorug07G0221500
rosa_samantha Rh5CG438200 Rh5CG569900 Rh6AG080700 Rh7CG362800 Rh7DG275900 Rh7DG343100
rosa_wichuraiana Rw0G004790 Rw0G008160 Rw0G008170 Rw0G008200 Rw0G008210 Rw0G012980 Rw0G013670 Rw0G019920 Rw0G020380 Rw0G022790 Rw0G022800 Rw0G023350 Rw1G005530 Rw1G021740 Rw3G013910 Rw3G015980 Rw3G023020 Rw3G023030 Rw3G025580 Rw5G027180 Rw5G037760 Rw5G037770 Rw5G037780 Rw5G037790 Rw5G037810 Rw5G037820 Rw5G039500 Rw5G039520 Rw5G039530 Rw5G039540 Rw5G039550 Rw5G039570 Rw5G039580 Rw5G039610 Rw5G039630 Rw5G039660 Rw5G042590 Rw5G047840 Rw5G048170 Rw5G048400 Rw5G048470 Rw5G048540 Rw6G007030 Rw6G007080 Rw6G007460 Rw6G017430 Rw7G023150 Rw7G023260 Rw7G029260 Rw7G029270 Rw7G030950

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 332, 4686, 7862
AarI CACCTGC 1 cut(s) 9301
AasI GACNNNNNNGTC 2 cut(s) 1669, 1851
AatII GACGTC 1 cut(s) 8988
Acc16I TGCGCA 1 cut(s) 9862
Acc36I ACCTGC 5 cut(s) 703, 1285, 7048, 8230, 9301
Acc65I GGTACC 3 cut(s) 4551, 5664, 8728
AccB1I GGYRCC 4 cut(s) 4551, 5664, 8728, 10152
AccB7I CCANNNNNTGG 2 cut(s) 163, 457
AccBSI CCGCTC 1 cut(s) 4385
AccI GTMKAC 7 cut(s) 3113, 3207, 3718, 4857, 7188, 7444, 7629
AccII CGCG 1 cut(s) 2788
AclI AACGTT 3 cut(s) 1332, 4971, 9996
AcoI YGGCCR 4 cut(s) 3006, 4653, 5813, 8594
AcvI CACGTG 1 cut(s) 7076
AcyI GRCGYC 1 cut(s) 8985
AdeI CACNNNGTG 1 cut(s) 8165
AfeI AGCGCT 1 cut(s) 5886
AflII CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
AflIII ACRYGT 4 cut(s) 3247, 4897, 6970, 7669
AgeI ACCGGT 2 cut(s) 3937, 9529
AjiI CACGTC 5 cut(s) 1941, 2420, 2884, 3513, 6362
AjnI CCWGG 5 cut(s) 1715, 1756, 2139, 6832, 9607
AleI CACNNNNGTG 1 cut(s) 1575
Alw21I GWGCWC 3 cut(s) 151, 2235, 8431
Alw44I GTGCAC 2 cut(s) 147, 8427
AlwNI CAGNNNCTG 3 cut(s) 1855, 6079, 7382
Ama87I CYCGRG 2 cut(s) 1562, 8418
Aor51HI AGCGCT 1 cut(s) 5886
AoxI GGCC 8 cut(s) 2285, 3006, 3925, 4653, 5813, 8551, 8594, 9473
ApaLI GTGCAC 2 cut(s) 147, 8427
ArsI GACNNNNNNTTYG 4 cut(s) 3510, 3542, 8726, 8758
AseI ATTAAT 2 cut(s) 6555, 7320
AsiGI ACCGGT 2 cut(s) 3937, 9529
Asp700I GAANNNNTTC 6 cut(s) 140, 865, 1957, 2223, 2918, 9167
Asp718I GGTACC 3 cut(s) 4551, 5664, 8728
AspLEI GCGC 4 cut(s) 3175, 4825, 5887, 9863
AspS9I GGNCC 7 cut(s) 2624, 3618, 4036, 6865, 8040, 8552, 9474
AsuC2I CCSGG 5 cut(s) 2451, 5880, 9342, 9898, 10159
AsuII TTCGAA 2 cut(s) 2922, 3843
AsuNHI GCTAGC 1 cut(s) 1250
AvaI CYCGRG 2 cut(s) 1562, 8418
AvaII GGWCC 5 cut(s) 2624, 3618, 4036, 6865, 8040
AxyI CCTNAGG 1 cut(s) 8528
BaeGI GKGCMC 9 cut(s) 151, 634, 2396, 3751, 5386, 7367, 8431, 10124, 10157
BaeI ACNNNNGTAYC 4 cut(s) 1528, 1561, 1583, 1616
BalI TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
BamHI GGATCC 2 cut(s) 5136, 7854
BanI GGYRCC 4 cut(s) 4551, 5664, 8728, 10152
BanII GRGCYC 2 cut(s) 2235, 2892
BarI GAAGNNNNNNTAC 2 cut(s) 1600, 1632
BauI CACGAG 1 cut(s) 7960
BbrPI CACGTG 1 cut(s) 7076
Bbv12I GWGCWC 3 cut(s) 151, 2235, 8431
BbvCI CCTCAGC 1 cut(s) 3828
BceAI ACGGC 7 cut(s) 1399, 1993, 3226, 4832, 4876, 7463, 7734
BcgI CGANNNNNNTGC 6 cut(s) 2167, 2201, 4826, 4860, 7463, 7497
BciT130I CCWGG 5 cut(s) 1717, 1758, 2141, 6834, 9609
BciVI GTATCC 4 cut(s) 208, 4102, 5731, 7738
BclI TGATCA 3 cut(s) 6177, 7713, 8823
BcnI CCSGG 5 cut(s) 2451, 5880, 9342, 9898, 10159
BfmI CTRYAG 7 cut(s) 1847, 2134, 2669, 3114, 4316, 5918, 9689
BfoI RGCGCY 3 cut(s) 3176, 4826, 5888
BfrI CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
BfuAI ACCTGC 5 cut(s) 703, 1285, 7048, 8230, 9301
BfuI GTATCC 4 cut(s) 208, 4102, 5731, 7738
BglI GCCNNNNNGGC 1 cut(s) 912
BglII AGATCT 6 cut(s) 898, 2707, 2832, 4354, 4479, 8773
BmcAI AGTACT 4 cut(s) 2251, 2263, 4740, 6015
Bme18I GGWCC 5 cut(s) 2624, 3618, 4036, 6865, 8040
BmeT110I CYCGRG 2 cut(s) 1562, 8418
BmgBI CACGTC 5 cut(s) 1941, 2420, 2884, 3513, 6362
BmgT120I GGNCC 7 cut(s) 2624, 3618, 4036, 6865, 8040, 8552, 9474
BmrI ACTGGG 6 cut(s) 599, 1413, 2317, 7363, 8293, 9088
BmtI GCTAGC 1 cut(s) 1254
BmuI ACTGGG 6 cut(s) 599, 1413, 2317, 7363, 8293, 9088
BplI GAGNNNNNCTC 4 cut(s) 3417, 3449, 5067, 5099
BpmI CTGGAG 3 cut(s) 1699, 5888, 6953
Bpu10I CCTNAGC 2 cut(s) 3828, 5993
Bpu14I TTCGAA 2 cut(s) 2922, 3843
BpuEI CTTGAG 9 cut(s) 701, 1249, 1580, 1796, 3343, 6137, 6434, 6556, 7765
BpuMI CCSGG 5 cut(s) 2451, 5880, 9342, 9898, 10159
BsaAI YACGTR 2 cut(s) 1769, 7076
BsaBI GATNNNNATC 3 cut(s) 2706, 4353, 5135
BsaHI GRCGYC 1 cut(s) 8985
BsaI GGTCTC 5 cut(s) 605, 5357, 6843, 9243, 9618
BsaWI WCCGGW 3 cut(s) 3937, 4554, 9529
BsaXI ACNNNNNCTCC 2 cut(s) 2712, 2742
Bse118I RCCGGY 2 cut(s) 3937, 9529
Bse21I CCTNAGG 1 cut(s) 8528
Bse3DI GCAATG 8 cut(s) 923, 2987, 3723, 4122, 6006, 7086, 7114, 9571
Bse8I GATNNNNATC 3 cut(s) 2706, 4353, 5135
BseBI CCWGG 5 cut(s) 1717, 1758, 2141, 6834, 9609
BseJI GATNNNNATC 3 cut(s) 2706, 4353, 5135
BseMI GCAATG 8 cut(s) 923, 2987, 3723, 4122, 6006, 7086, 7114, 9571
BseSI GKGCMC 9 cut(s) 151, 634, 2396, 3751, 5386, 7367, 8431, 10124, 10157
BseYI CCCAGC 6 cut(s) 247, 383, 788, 3491, 5141, 7913
BsgI GTGCAG 3 cut(s) 1332, 3240, 4890
Bsh1236I CGCG 1 cut(s) 2788
Bsh1285I CGRYCG 2 cut(s) 1576, 5595
BshFI GGCC 8 cut(s) 2287, 3008, 3927, 4655, 5815, 8553, 8596, 9475
BshNI GGYRCC 4 cut(s) 4551, 5664, 8728, 10152
BshTI ACCGGT 2 cut(s) 3937, 9529
BsiEI CGRYCG 2 cut(s) 1576, 5595
BsiHKAI GWGCWC 3 cut(s) 151, 2235, 8431
BsiHKCI CYCGRG 2 cut(s) 1562, 8418
BsiSI CCGG 8 cut(s) 2450, 3938, 4555, 5880, 9341, 9530, 9897, 10159
BslFI GGGAC 2 cut(s) 8431, 8498
BsmBI CGTCTC 2 cut(s) 1036, 3593
BsmFI GGGAC 2 cut(s) 8431, 8498
BsmI GAATGC 6 cut(s) 1322, 3582, 3883, 5932, 6733, 8070
BsnI GGCC 8 cut(s) 2287, 3008, 3927, 4655, 5815, 8553, 8596, 9475
Bso31I GGTCTC 5 cut(s) 605, 5357, 6843, 9243, 9618
BsoBI CYCGRG 2 cut(s) 1562, 8418
Bsp119I TTCGAA 2 cut(s) 2922, 3843
Bsp1407I TGTACA 4 cut(s) 1179, 7299, 8566, 10228
Bsp19I CCATGG 7 cut(s) 129, 456, 1549, 3153, 4803, 6658, 7536
Bsp68I TCGCGA 1 cut(s) 2788
BspANI GGCC 8 cut(s) 2287, 3008, 3927, 4655, 5815, 8553, 8596, 9475
BspFNI CGCG 1 cut(s) 2788
BspHI TCATGA 2 cut(s) 3564, 8089
BspMAI CTGCAG 3 cut(s) 2673, 4320, 9693
BspMI ACCTGC 5 cut(s) 703, 1285, 7048, 8230, 9301
BspOI GCTAGC 1 cut(s) 1254
BspQI GCTCTTC 4 cut(s) 3385, 5035, 6402, 6711
BspT104I TTCGAA 2 cut(s) 2922, 3843
BspT107I GGYRCC 4 cut(s) 4551, 5664, 8728, 10152
BspTI CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
BspTNI GGTCTC 5 cut(s) 605, 5357, 6843, 9243, 9618
BsrBI CCGCTC 1 cut(s) 4385
BsrDI GCAATG 8 cut(s) 923, 2987, 3723, 4122, 6006, 7086, 7114, 9571
BsrFI RCCGGY 2 cut(s) 3937, 9529
BsrGI TGTACA 4 cut(s) 1179, 7299, 8566, 10228
BssAI RCCGGY 2 cut(s) 3937, 9529
BssNI GRCGYC 1 cut(s) 8985
BssSI CACGAG 1 cut(s) 7960
Bst2BI CACGAG 1 cut(s) 7960
Bst2UI CCWGG 5 cut(s) 1717, 1758, 2141, 6834, 9609
BstACI GRCGYC 1 cut(s) 8985
BstAFI CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 4 cut(s) 1179, 7299, 8566, 10228
BstBAI YACGTR 2 cut(s) 1769, 7076
BstBI TTCGAA 2 cut(s) 2922, 3843
BstDSI CCRYGG 8 cut(s) 129, 456, 1549, 1576, 3153, 4803, 6658, 7536
BstEII GGTNACC 2 cut(s) 1553, 4150
BstENI CCTNNNNNAGG 2 cut(s) 707, 1562
BstFNI CGCG 1 cut(s) 2788
BstH2I RGCGCY 3 cut(s) 3176, 4826, 5888
BstHHI GCGC 4 cut(s) 3175, 4825, 5887, 9863
BstMCI CGRYCG 2 cut(s) 1576, 5595
BstNI CCWGG 5 cut(s) 1717, 1758, 2141, 6834, 9609
BstNSI RCATGY 9 cut(s) 1975, 2309, 3251, 4901, 5726, 6676, 6974, 7673, 9061
BstPI GGTNACC 2 cut(s) 1553, 4150
BstSFI CTRYAG 7 cut(s) 1847, 2134, 2669, 3114, 4316, 5918, 9689
BstSLI GKGCMC 9 cut(s) 151, 634, 2396, 3751, 5386, 7367, 8431, 10124, 10157
BstSNI TACGTA 1 cut(s) 1769
BstUI CGCG 1 cut(s) 2788
BstXI CCANNNNNNTGG 2 cut(s) 796, 8237
Bsu36I CCTNAGG 1 cut(s) 8528
BsuI GTATCC 4 cut(s) 208, 4102, 5731, 7738
BsuRI GGCC 8 cut(s) 2287, 3008, 3927, 4655, 5815, 8553, 8596, 9475
BtgI CCRYGG 8 cut(s) 129, 456, 1549, 1576, 3153, 4803, 6658, 7536
BtgZI GCGATG 2 cut(s) 2501, 5233
BtrI CACGTC 5 cut(s) 1941, 2420, 2884, 3513, 6362
BtsI GCAGTG 3 cut(s) 3192, 4842, 9068
BtuMI TCGCGA 1 cut(s) 2788
BveI ACCTGC 5 cut(s) 703, 1285, 7048, 8230, 9301
CaiI CAGNNNCTG 3 cut(s) 1855, 6079, 7382
CciI TCATGA 2 cut(s) 3564, 8089
CfoI GCGC 4 cut(s) 3175, 4825, 5887, 9863
Cfr10I RCCGGY 2 cut(s) 3937, 9529
Cfr13I GGNCC 7 cut(s) 2624, 3618, 4036, 6865, 8040, 8552, 9474
CseI GACGC 1 cut(s) 1053
CspAI ACCGGT 2 cut(s) 3937, 9529
CspCI CAANNNNNGTGG 4 cut(s) 8794, 8829, 10200, 10235
DraI TTTAAA 5 cut(s) 1237, 1284, 2997, 4644, 5805
DraIII CACNNNGTG 1 cut(s) 8165
DrdI GACNNNNNNGTC 2 cut(s) 1669, 1851
DseDI GACNNNNNNGTC 2 cut(s) 1669, 1851
EaeI YGGCCR 4 cut(s) 3006, 4653, 5813, 8594
EciI GGCGGA 1 cut(s) 3234
Ecl136II GAGCTC 1 cut(s) 2233
Eco105I TACGTA 1 cut(s) 1769
Eco24I GRGCYC 2 cut(s) 2235, 2892
Eco31I GGTCTC 5 cut(s) 605, 5357, 6843, 9243, 9618
Eco32I GATATC 5 cut(s) 1152, 2906, 5866, 6240, 8344
Eco47I GGWCC 5 cut(s) 2624, 3618, 4036, 6865, 8040
Eco47III AGCGCT 1 cut(s) 5886
Eco53kI GAGCTC 1 cut(s) 2233
Eco72I CACGTG 1 cut(s) 7076
Eco81I CCTNAGG 1 cut(s) 8528
Eco88I CYCGRG 2 cut(s) 1562, 8418
Eco91I GGTNACC 2 cut(s) 1553, 4150
EcoICRI GAGCTC 1 cut(s) 2233
EcoNI CCTNNNNNAGG 2 cut(s) 707, 1562
EcoO109I RGGNCCY 2 cut(s) 2624, 4036
EcoO65I GGTNACC 2 cut(s) 1553, 4150
EcoRI GAATTC 6 cut(s) 378, 2862, 4509, 4672, 5437, 7908
EcoRII CCWGG 5 cut(s) 1715, 1756, 2139, 6832, 9607
EcoRV GATATC 5 cut(s) 1152, 2906, 5866, 6240, 8344
EcoT22I ATGCAT 3 cut(s) 4095, 5724, 8505
EcoT38I GRGCYC 2 cut(s) 2235, 2892
Esp3I CGTCTC 2 cut(s) 1036, 3593
FalI AAGNNNNNCTT 8 cut(s) 219, 251, 523, 555, 3881, 3913, 5510, 5542
FaqI GGGAC 2 cut(s) 8431, 8498
FauI CCCGC 1 cut(s) 4390
FauNDI CATATG 3 cut(s) 1304, 1991, 7055
FbaI TGATCA 3 cut(s) 6177, 7713, 8823
FblI GTMKAC 7 cut(s) 3113, 3207, 3718, 4857, 7188, 7444, 7629
FriOI GRGCYC 2 cut(s) 2235, 2892
FspI TGCGCA 1 cut(s) 9862
GlaI GCGC 4 cut(s) 3174, 4824, 5886, 9862
GsaI CCCAGC 6 cut(s) 251, 387, 792, 3495, 5145, 7917
GsuI CTGGAG 3 cut(s) 1699, 5888, 6953
HaeII RGCGCY 3 cut(s) 3176, 4826, 5888
HaeIII GGCC 8 cut(s) 2287, 3008, 3927, 4655, 5815, 8553, 8596, 9475
HapII CCGG 8 cut(s) 2450, 3938, 4555, 5880, 9341, 9530, 9897, 10159
HgaI GACGC 1 cut(s) 1053
HhaI GCGC 4 cut(s) 3175, 4825, 5887, 9863
Hin1I GRCGYC 1 cut(s) 8985
Hin6I GCGC 4 cut(s) 3173, 4823, 5885, 9861
HinP1I GCGC 4 cut(s) 3173, 4823, 5885, 9861
HincII GTYRAC 1 cut(s) 4708
HindII GTYRAC 1 cut(s) 4708
HindIII AAGCTT 7 cut(s) 782, 2928, 4575, 6051, 6113, 8657, 10070
HpaII CCGG 8 cut(s) 2450, 3938, 4555, 5880, 9341, 9530, 9897, 10159
Hpy99I CGWCG 3 cut(s) 2424, 2592, 4239
Hsp92I GRCGYC 1 cut(s) 8985
HspAI GCGC 4 cut(s) 3173, 4823, 5885, 9861
KpnI GGTACC 3 cut(s) 4555, 5668, 8732
Ksp22I TGATCA 3 cut(s) 6177, 7713, 8823
LguI GCTCTTC 4 cut(s) 3385, 5035, 6402, 6711
LmnI GCTCC 8 cut(s) 1732, 2011, 2887, 5152, 5882, 7075, 9098, 9859
MbiI CCGCTC 1 cut(s) 4385
MlsI TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
MluNI TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
MmeI TCCRAC 9 cut(s) 2392, 2698, 2759, 3205, 4855, 6799, 7627, 10190, 10222
Mox20I TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
Mph1103I ATGCAT 3 cut(s) 4095, 5724, 8505
MroXI GAANNNNTTC 6 cut(s) 140, 865, 1957, 2223, 2918, 9167
MscI TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
Msp20I TGGCCA 4 cut(s) 3008, 4655, 5815, 8596
MspA1I CMGCKG 2 cut(s) 4627, 8198
MspCI CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
MspI CCGG 8 cut(s) 2450, 3938, 4555, 5880, 9341, 9530, 9897, 10159
MssI GTTTAAAC 1 cut(s) 1284
Mva1269I GAATGC 6 cut(s) 1322, 3582, 3883, 5932, 6733, 8070
MvaI CCWGG 5 cut(s) 1717, 1758, 2141, 6834, 9609
MvnI CGCG 1 cut(s) 2788
NciI CCSGG 5 cut(s) 2451, 5880, 9342, 9898, 10159
NcoI CCATGG 7 cut(s) 129, 456, 1549, 3153, 4803, 6658, 7536
NdeI CATATG 3 cut(s) 1304, 1991, 7055
NheI GCTAGC 1 cut(s) 1250
NmeAIII GCCGAG 4 cut(s) 4208, 4707, 8603, 9905
NmuCI GTSAC 8 cut(s) 1510, 4840, 6357, 6485, 6698, 6793, 8986, 9361
NruI TCGCGA 1 cut(s) 2788
NsbI TGCGCA 1 cut(s) 9862
NsiI ATGCAT 3 cut(s) 4095, 5724, 8505
NspI RCATGY 9 cut(s) 1975, 2309, 3251, 4901, 5726, 6676, 6974, 7673, 9061
NspV TTCGAA 2 cut(s) 2922, 3843
OliI CACNNNNGTG 1 cut(s) 1575
PaeI GCATGC 1 cut(s) 5726
PaeR7I CTCGAG 1 cut(s) 1562
PagI TCATGA 2 cut(s) 3564, 8089
PaqCI CACCTGC 1 cut(s) 9301
PciI ACATGT 4 cut(s) 3247, 4897, 6970, 7669
PciSI GCTCTTC 4 cut(s) 3385, 5035, 6402, 6711
PcsI WCGNNNNNNNCGW 2 cut(s) 1569, 5300
PctI GAATGC 6 cut(s) 1322, 3582, 3883, 5932, 6733, 8070
PdmI GAANNNNTTC 6 cut(s) 140, 865, 1957, 2223, 2918, 9167
PflFI GACNNNGTC 1 cut(s) 4838
PflMI CCANNNNNTGG 2 cut(s) 163, 457
PfoI TCCNGGA 1 cut(s) 1715
PinAI ACCGGT 2 cut(s) 3937, 9529
Ple19I CGATCG 1 cut(s) 5595
PmaCI CACGTG 1 cut(s) 7076
PmeI GTTTAAAC 1 cut(s) 1284
PmlI CACGTG 1 cut(s) 7076
Ppu21I YACGTR 2 cut(s) 1769, 7076
PpuMI RGGWCCY 2 cut(s) 2624, 4036
PscI ACATGT 4 cut(s) 3247, 4897, 6970, 7669
PshBI ATTAAT 2 cut(s) 6555, 7320
PsiI TTATAA 3 cut(s) 332, 4686, 7862
Psp124BI GAGCTC 1 cut(s) 2235
Psp1406I AACGTT 3 cut(s) 1332, 4971, 9996
Psp5II RGGWCCY 2 cut(s) 2624, 4036
Psp6I CCWGG 5 cut(s) 1715, 1756, 2139, 6832, 9607
PspCI CACGTG 1 cut(s) 7076
PspEI GGTNACC 2 cut(s) 1553, 4150
PspFI CCCAGC 6 cut(s) 247, 383, 788, 3491, 5141, 7913
PspGI CCWGG 5 cut(s) 1715, 1756, 2139, 6832, 9607
PspPI GGNCC 7 cut(s) 2624, 3618, 4036, 6865, 8040, 8552, 9474
PspPPI RGGWCCY 2 cut(s) 2624, 4036
PstI CTGCAG 3 cut(s) 2673, 4320, 9693
PstNI CAGNNNCTG 3 cut(s) 1855, 6079, 7382
PsyI GACNNNGTC 1 cut(s) 4838
PvuI CGATCG 1 cut(s) 5595
PvuII CAGCTG 1 cut(s) 8198
RruI TCGCGA 1 cut(s) 2788
SacI GAGCTC 1 cut(s) 2235
SapI GCTCTTC 4 cut(s) 3385, 5035, 6402, 6711
Sau96I GGNCC 7 cut(s) 2624, 3618, 4036, 6865, 8040, 8552, 9474
ScaI AGTACT 4 cut(s) 2251, 2263, 4740, 6015
SfcI CTRYAG 7 cut(s) 1847, 2134, 2669, 3114, 4316, 5918, 9689
Sfr274I CTCGAG 1 cut(s) 1562
SfuI TTCGAA 2 cut(s) 2922, 3843
SinI GGWCC 5 cut(s) 2624, 3618, 4036, 6865, 8040
SlaI CTCGAG 1 cut(s) 1562
SnaBI TACGTA 1 cut(s) 1769
SphI GCATGC 1 cut(s) 5726
SspI AATATT 7 cut(s) 223, 445, 1104, 5752, 6892, 9115, 9987
SstI GAGCTC 1 cut(s) 2235
TauI GCSGC 3 cut(s) 1948, 4872, 9607
TseFI GTSAC 8 cut(s) 1510, 4840, 6357, 6485, 6698, 6793, 8986, 9361
Tsp45I GTSAC 8 cut(s) 1510, 4840, 6357, 6485, 6698, 6793, 8986, 9361
TspGWI ACGGA 7 cut(s) 317, 2479, 6082, 6341, 6857, 7647, 8502
Tth111I GACNNNGTC 1 cut(s) 4838
Van91I CCANNNNNTGG 2 cut(s) 163, 457
Vha464I CTTAAG 4 cut(s) 1025, 3506, 8903, 9767
VneI GTGCAC 2 cut(s) 147, 8427
VpaK11BI GGWCC 5 cut(s) 2624, 3618, 4036, 6865, 8040
VspI ATTAAT 2 cut(s) 6555, 7320
XagI CCTNNNNNAGG 2 cut(s) 707, 1562
XbaI TCTAGA 2 cut(s) 6061, 8845
XceI RCATGY 9 cut(s) 1975, 2309, 3251, 4901, 5726, 6676, 6974, 7673, 9061
XhoI CTCGAG 1 cut(s) 1562
XmiI GTMKAC 7 cut(s) 3113, 3207, 3718, 4857, 7188, 7444, 7629
XmnI GAANNNNTTC 6 cut(s) 140, 865, 1957, 2223, 2918, 9167
ZraI GACGTC 1 cut(s) 8986
ZrmI AGTACT 4 cut(s) 2251, 2263, 4740, 6015
Zsp2I ATGCAT 3 cut(s) 4095, 5724, 8505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.