Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

16634613 .. 16635307

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCCGTTTGTGCTGACAAAGTAATTTGGAGTTATGCTGAAGAATGGACTAGTGCTAACTTCAAGCTAAATTCTGATACAGTCCACAGATATACTGTGCTTGCTTGGAAGAAACCTGTTGCAAATTTTTACAAGTTAAATATTGATGGGACTAGATCTTCATCAACTGGCAAAATTGGTGCTGGGGGTGTTATCAGGGATCATCTTGGATCAAAGGGTTTCACTCCTGCCCCCATAGTGACTCGAACCCATGACTTCGTACACAGAAAGCTGAATTCTCTCTCCACCCTCTTGGTTCTCTCCTCAAGGGCTGCTCAAATATTATGGATGCTATGGGGAATGCTCACCTCTCTCACATCTTCATGCAGAGAGTGCAATATGACGGCTGACTCTTTGGCTAAGAACAGCATCAATCATGAGCTTGGTCCAATCATTTTTGAGTACCCTCCTGTTCATGCTGCCCAGGCCTATATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

9.24

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	207, 217
AcsI	RAATTY	3 cut(s)	70, 124, 274
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	261, 443
AgsI	TTSAA	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	67, 271, 421
AluI	AGCT	3 cut(s)	67, 271, 421
AlwI	GGATC	2 cut(s)	207, 217
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	311, 458
ApoI	RAATTY	3 cut(s)	70, 124, 274
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	298, 445
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	2 cut(s)	51, 153
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	2 cut(s)	312, 459
BlsI	GCNGC	2 cut(s)	313, 460
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	318, 417
BpuEI	CTTGAG	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	298, 445
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	467
Bsp143I	GATC	3 cut(s)	155, 199, 209
BspANI	GGCC	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	415
BspPI	GGATC	2 cut(s)	207, 217
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	155, 199, 209
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	82, 97
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	158, 202, 212
BstMBI	GATC	3 cut(s)	155, 199, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 464
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	298, 445
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	260, 442
CviAII	CATG	4 cut(s)	251, 363, 416, 455
CviJI	RGCY	7 cut(s)	67, 271, 311, 386, 398, 421, 467
CviKI_1	RGCY	7 cut(s)	67, 271, 311, 386, 398, 421, 467
CviQI	GTAC	2 cut(s)	260, 442
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	157, 201, 211
DpnII	GATC	3 cut(s)	155, 199, 209
Eco147I	AGGCCT	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	254, 366, 419, 458
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	4 cut(s)	250, 362, 415, 454
Fnu4HI	GCNGC	2 cut(s)	312, 459
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	312, 459
FspBI	CTAG	2 cut(s)	51, 153
GluI	GCNGC	2 cut(s)	312, 459
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	467
Hin1II	CATG	4 cut(s)	254, 366, 419, 458
HinfI	GANTC	2 cut(s)	241, 389
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	85, 262
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	416, 477
Hpy8I	GTNNAC	2 cut(s)	85, 262
HpyCH4III	ACNGT	2 cut(s)	82, 97
HpyCH4V	TGCA	3 cut(s)	122, 366, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 464
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	254, 366, 419, 458
Kzo9I	GATC	3 cut(s)	155, 199, 209
LpnPI	CCDG	8 cut(s)	129, 153, 168, 181, 240, 449, 462, 476
Lsp1109I	GCAGC	2 cut(s)	298, 445
LweI	GCATC	2 cut(s)	318, 417
MaeI	CTAG	2 cut(s)	51, 153
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	157, 201, 211
MboI	GATC	3 cut(s)	155, 199, 209
MboII	GAAGA	4 cut(s)	53, 121, 150, 351
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	5 cut(s)	24, 70, 124, 174, 274
MlyI	GAGTC	2 cut(s)	235, 383
MnlI	CCTC	4 cut(s)	299, 313, 358, 456
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	372, 464
NdeII	GATC	3 cut(s)	155, 199, 209
NlaIII	CATG	4 cut(s)	254, 366, 419, 458
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	467
PctI	GAATGC	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	313, 460
PleI	GAGTC	2 cut(s)	235, 383
PpsI	GAGTC	2 cut(s)	235, 383
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	2 cut(s)	261, 443
RsaNI	GTAC	2 cut(s)	260, 442
RseI	CAYNNNNRTG	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	312, 459
Sau3AI	GATC	3 cut(s)	155, 199, 209
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	235, 383
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	5 cut(s)	69, 118, 273, 350, 423
SfaNI	GCATC	2 cut(s)	318, 417
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	5 cut(s)	24, 70, 124, 174, 274
SseBI	AGGCCT	1 cut(s)	467
SspI	AATATT	2 cut(s)	142, 321
SspMI	CTAG	2 cut(s)	51, 153
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	82, 97
TaqI	TCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	24, 70, 124, 174, 274
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	311, 458
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	150, 351, 443
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	3 cut(s)	70, 124, 274
XspI	CTAG	2 cut(s)	51, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.