Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Reverse (-)

22361566 .. 22362128

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGGCCTTTGGATGAAGCTGAAACCACTGCCGTGTTCGAAAAGCTGTTCAAGTTCACAGGCAACAACCTCAAAAACATTGTCGAGAACCCTTCTCATGAAGGTCCAGACCCAAATCCAGGTCGCTACTGCTTTCGCCTCAACAAGAACAGGGTCTACTACGTCAGTGACTCACTAGTAAAGCGTGCAACAAACATAGCTCGGTTCACTCACGGTGGCAGCTTCCACCTAACTGTTCAATGTTTGAGTTTAGTGGCCTCAAATGCTAAACACAAGGTCTGGCTCAAACCTACCTCCGAGATGTCATATCTCTACGGAAACCATGTTTTGAAAGGTGGGTTGGGTAGGATTACAGAGAATATTATGCCCGGTGATGGGGTGGTTGTGTTTTCAATGTCAGATATTCCATTGGGTTTTGGGATTGCGGCCAAGTCTACCCAGGATTGTAGGAAGTTGGACCCCAATGGAATTGTGGTACTTCACCAGGCTGATATTGGAGAGTACTTGAGGATGGAGGATGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

7.75

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
pre-PUA_NIP7	PF17833	1 - 68	5.7e-11	NIP7/UPF0113, pre-PUA domain
UPF0113	PF03657	92 - 170	2.3e-20	UPF0113 PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	156, 434
AciI	CCGC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	426
AfaI	GTAC	2 cut(s)	477, 503
AfiI	CCNNNNNNNGG	3 cut(s)	119, 374, 375
AgsI	TTSAA	4 cut(s)	52, 239, 331, 393
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	118, 438, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	20, 46, 200, 222, 523
AluI	AGCT	5 cut(s)	20, 46, 200, 222, 523
AoxI	GGCC	3 cut(s)	5, 255, 426
ApeKI	GCWGC	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	2 cut(s)	104, 457
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	383, 473
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	104, 457
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	368, 505
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	3 cut(s)	120, 440, 485
BcnI	CCSGG	1 cut(s)	369
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	220, 426
BlsI	GCNGC	2 cut(s)	221, 427
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	4 cut(s)	120, 369, 440, 485
Bme18I	GGWCC	2 cut(s)	104, 457
BmgT120I	GGNCC	2 cut(s)	104, 457
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	4 cut(s)	120, 369, 440, 485
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 374, 375
BseBI	CCWGG	3 cut(s)	120, 440, 485
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	19, 516, 523
BseLI	CCNNNNNNNGG	3 cut(s)	119, 374, 375
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	3 cut(s)	7, 257, 428
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	119, 374, 375
BsnI	GGCC	3 cut(s)	7, 257, 428
Bsp119I	TTCGAA	1 cut(s)	39
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	3 cut(s)	7, 257, 428
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	438
Bst2UI	CCWGG	3 cut(s)	120, 440, 485
Bst4CI	ACNGT	2 cut(s)	215, 235
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	19, 516, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	3 cut(s)	120, 440, 485
BstSCI	CCNGG	4 cut(s)	118, 367, 438, 483
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	7, 257, 428
BtsCI	GGATG	3 cut(s)	19, 516, 523
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 172
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	104, 457
Csp6I	GTAC	2 cut(s)	476, 502
CviAII	CATG	2 cut(s)	98, 323
CviQI	GTAC	2 cut(s)	476, 502
EaeI	YGGCCR	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	104, 457
EcoRII	CCWGG	3 cut(s)	118, 438, 483
FaeI	CATG	2 cut(s)	101, 326
FaiI	YATR	5 cut(s)	99, 197, 307, 324, 365
FatI	CATG	2 cut(s)	97, 322
FblI	GTMKAC	2 cut(s)	156, 434
Fnu4HI	GCNGC	2 cut(s)	220, 426
FokI	GGATG	2 cut(s)	26, 523
Fsp4HI	GCNGC	2 cut(s)	220, 426
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	220, 426
HaeIII	GGCC	3 cut(s)	7, 257, 428
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	2 cut(s)	101, 326
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	383, 473
Hpy166II	GTNNAC	4 cut(s)	57, 157, 207, 435
Hpy188I	TCNGA	2 cut(s)	298, 400
Hpy188III	TCNNGA	3 cut(s)	85, 98, 107
Hpy8I	GTNNAC	4 cut(s)	57, 157, 207, 435
HpyAV	CCTTC	2 cut(s)	95, 102
HpyCH4III	ACNGT	2 cut(s)	215, 235
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	101, 326
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	167
MluCI	AATT	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	6 cut(s)	80, 149, 268, 304, 501, 508
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	4 cut(s)	120, 369, 440, 485
MvaI	CCWGG	3 cut(s)	120, 440, 485
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	369
NlaIII	CATG	2 cut(s)	101, 326
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	39
OliI	CACNNNNGTG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	221, 427
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	118, 438, 483
PspGI	CCWGG	3 cut(s)	118, 438, 483
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	104, 457
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
RsaI	GTAC	2 cut(s)	477, 503
RsaNI	GTAC	2 cut(s)	476, 502
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	2 cut(s)	220, 426
Sau96I	GGNCC	2 cut(s)	104, 457
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	120, 369, 440, 485
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	104, 457
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	1 cut(s)	468
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	425
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	4 cut(s)	118, 367, 438, 483
TaaI	ACNGT	2 cut(s)	215, 235
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	39, 84
TasI	AATT	1 cut(s)	468
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	428
TscAI	CASTG	2 cut(s)	34, 172
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	30, 114
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	34, 172
VpaK11BI	GGWCC	2 cut(s)	104, 457
XcmI	CCANNNNNNNNNTGG	2 cut(s)	469, 491
XmiI	GTMKAC	2 cut(s)	156, 434
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.