Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006275

Physical Location & Seq

Genomic Coordinates Forward (+)

7039496 .. 7041591

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G093900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGACCTTTAGATGAGACTGAGACCACGGCAGTGTTCGAAAAGCTTTTCAAGTTCACAGGCAACAACCTAAAAAACATAGTCGAGAACCCTTCTCATGAAGGCCCAGACCCGGATTCAGGCCGTTATTGCTTTCGCCTCCACAAGAACAAGGTCTACTATGTTAGCGAATCACTAGTAAAGCGTGCTACAAATATAGCTCGGACTCAGTTAGTCTCTCTGGGCACTTGTATCGGTAGGTTTACTCATGGTGGTAGTTTCCACTTAACAGTTCAGTGCTTGAGTTTAGTGGCCTCAAATGCTAAACATAAGGTCTGGCTCAAACCTACCTCTGAGATGTCGTTCTTGTACGGAAACCATGTCTTGAAAGGTGGTTTGGGGAGGATTACAGAGAATATTGTGCCAGGTGATGGTGTGGTGGTGTTTTCGATGTCAGATGTTCCCTTGGGTTTCGGGATTGCGGCCAAGTCTACTCAGGATTGTAGGAAGTTGGATCCCAATGGAATTGTGGTGCTTCACCAGACAGATATTGGAGAGTACTTGAGGATGGAGGATGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0113

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

7.72

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15770
fragaria_vesca	FvH4_4g00380 FvH4_4g00380 FvH4_4g00380 FvH4_6g25030
malus_domestica	MD03G1177300.v1.1 MD17G1218500.v1.1
prunus_persica	Prupe.3G093900_v2.0.a1 Prupe.3G093900_v2.0.a1
pyrus_communis	pycom17g22310
rosa_chinensis	RchiOBHm_Chr1g0332291 RchiOBHm_Chr7g0221961
rosa_laevigata	RLG00000001889 RLG00000002107 RLG00000029680
rosa_multiflora	Rmu_sc0004325.1_g000027
rosa_roxburghii	Rroxscaffold_3G00237560
rosa_rugosa	Rorug01G0099800 Rorug01G0099900 Rorug07G0204500
rosa_samantha	Rh1AG123700 Rh1CG117900 Rh7AG345300 Rh7BG335800 Rh7CG362700
rosa_wichuraiana	Rw1G010070 Rw7G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	2 cut(s)	156, 470
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	488, 501
AcoI	YGGCCR	1 cut(s)	462
AfaI	GTAC	2 cut(s)	350, 539
AfiI	CCNNNNNNNGG	3 cut(s)	112, 119, 410
AgsI	TTSAA	2 cut(s)	52, 367
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	46, 200
AluI	AGCT	2 cut(s)	46, 200
Alw26I	GTCTC	3 cut(s)	11, 17, 220
AlwI	GGATC	2 cut(s)	488, 501
AoxI	GGCC	4 cut(s)	103, 121, 291, 462
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	419, 509
AsuII	TTCGAA	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	493
BccI	CCATC	2 cut(s)	404, 541
BceAI	ACGGC	2 cut(s)	45, 108
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	11, 17, 220
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	113, 405
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	113, 405
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	301, 562
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	27, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 119, 410
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	27, 444
BseGI	GGATG	2 cut(s)	552, 559
BseLI	CCNNNNNNNGG	3 cut(s)	112, 119, 410
BseMII	CTCAG	4 cut(s)	12, 221, 324, 488
BseSI	GKGCMC	1 cut(s)	227
BshFI	GGCC	4 cut(s)	105, 123, 293, 464
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	112, 119, 410
BsmAI	GTCTC	3 cut(s)	11, 17, 220
BsnI	GGCC	4 cut(s)	105, 123, 293, 464
Bso31I	GGTCTC	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	493, 556
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	4 cut(s)	105, 123, 293, 464
BspCNI	CTCAG	4 cut(s)	13, 220, 325, 487
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	2 cut(s)	488, 501
BspT104I	TTCGAA	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	27, 444
BssMI	GATC	2 cut(s)	493, 556
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	21, 207, 333, 474
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	552, 559
BstKTI	GATC	2 cut(s)	496, 559
BstMAI	GTCTC	3 cut(s)	11, 17, 220
BstMBI	GATC	2 cut(s)	493, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 299
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	111, 403
BstSLI	GKGCMC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	4 cut(s)	105, 123, 293, 464
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	552, 559
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 281
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	349, 538
CviAII	CATG	3 cut(s)	98, 248, 359
CviJI	RGCY	7 cut(s)	46, 105, 123, 200, 293, 319, 464
CviKI_1	RGCY	7 cut(s)	46, 105, 123, 200, 293, 319, 464
CviQI	GTAC	2 cut(s)	349, 538
DdeI	CTNAG	4 cut(s)	21, 207, 333, 474
DpnI	GATC	2 cut(s)	495, 558
DpnII	GATC	2 cut(s)	493, 556
EaeI	YGGCCR	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	101, 251, 362
FaiI	YATR	7 cut(s)	80, 99, 162, 197, 249, 309, 360
FatI	CATG	3 cut(s)	97, 247, 358
FblI	GTMKAC	2 cut(s)	156, 470
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	105, 123, 293, 464
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	3 cut(s)	101, 251, 362
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	116, 170, 205
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	419, 509
Hpy166II	GTNNAC	4 cut(s)	57, 157, 243, 471
Hpy188I	TCNGA	3 cut(s)	204, 334, 436
Hpy188III	TCNNGA	5 cut(s)	85, 98, 364, 454, 476
Hpy8I	GTNNAC	4 cut(s)	57, 157, 243, 471
HpyAV	CCTTC	2 cut(s)	95, 102
HpyCH4III	ACNGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 299
HpyF3I	CTNAG	4 cut(s)	21, 207, 333, 474
Hsp92II	CATG	3 cut(s)	101, 251, 362
Kzo9I	GATC	2 cut(s)	493, 556
MaeI	CTAG	1 cut(s)	176
MalI	GATC	2 cut(s)	495, 558
MboI	GATC	2 cut(s)	493, 556
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	149, 304, 340, 375, 537, 544
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	113, 405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	129, 299
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	493, 556
NlaIII	CATG	3 cut(s)	101, 251, 362
NlaIV	GGNNCC	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	39
OliI	CACNNNNGTG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	116, 170
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	104
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	2 cut(s)	350, 539
RsaNI	GTAC	2 cut(s)	349, 538
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	493, 556
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	113, 405
SduI	GDGCHC	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	280, 541
SmoI	CTYRAG	2 cut(s)	280, 541
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	461
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	111, 403
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	39, 84, 428
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	116, 170
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	39, 281
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	39, 281
Van91I	CCANNNNNTGG	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 527
XmiI	GTMKAC	2 cut(s)	156, 470
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.