Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003422.1

Orthogroup ID

OG0006805

Physical Location & Seq

Genomic Coordinates Forward (+)

893 .. 1819

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003422.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggcagcaacttgctttgaagaaccaaacatgaatggagatgactcggtgattctcttttctacctcaaactcccctgaacaatataccaccaccccttcctcttcttcctaccactcatcaccaccgtcaccccaacattgcattaacccaacttacaatctcactgtacacaacctctcctacacttatgtcccaaataggggcataccactgtcagtttctcaactgctgcaaaagcctaagcctgttgccatactcaagtcagtctgttttgttgcaaaaagttgtgaaatacttgccattgttggcccgagtggcactggaaaatctaccctcctgcaaataatatcgggaagggtgaaagatgaagactacaatcccaaaagtgtctccattaatgatcatcagataactagtcctgctcagttgcgcaaaatatgtggatttgttgcacaagaagatagtctgcttcccctactgactgtgaaggagactttgatgttcactgctaagtttcgacttaaaggcattgatgcaaaagagagggtggagagcttaatgcaagagcttggtcttctccaagtctctgatagctatgtgggagatgaagagaatagagggatatctggtggagaaaggaaaagggtatctataggtgtcgatatgattcatgatccacctattttgcttcttgatgagccgacttcaggcctagacagcacttcggcacttcaagttatagagcttctttctataatggccaaatcaaagcaaagaaccgtgcttttatcaatacaccaaccaagctatagaattcttcatcacatctccaactttctgctctgttttctaacttgtgttttcttactgcaggtaaggatctcttttagactagaagatgtaaagattagaatgtataggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

308

Amino Acids

34.15

Weight (kDa)

7.07

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19410 AT5G19410
fragaria_vesca	FvH4_5g29200
malus_domestica	MD11G1185400.v1.1
prunus_persica	Prupe.4G266200_v2.0.a1
pyrus_communis	pycom12g08770
rosa_chinensis	RchiOBHm_Chr1g0332261 RchiOBHm_Chr1g0332281 RchiOBHm_Chr7g0221951
rosa_laevigata	RLG00000002108 RLG00000029681
rosa_multiflora	Rmu_sc0000834.1_g000025 Rmu_sc0003422.1_g000001 Rmu_sc0004325.1_g000028
rosa_roxburghii	Rroxscaffold_3G00237570
rosa_rugosa	Rorug01G0099800 Rorug07G0204400
rosa_samantha	Rh1AG123500 Rh1AG123600 Rh1DG128800 Rh7AG345200 Rh7BG335700 Rh7CG362600 Rh7DG342700
rosa_wichuraiana	Rw1G010060 Rw7G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	865
AclWI	GGATC	2 cut(s)	671, 890
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	816
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	3 cut(s)	202, 203, 710
AgsI	TTSAA	2 cut(s)	20, 737
AhlI	ACTAGT	1 cut(s)	416
AluBI	AGCT	5 cut(s)	558, 571, 597, 748, 810
AluI	AGCT	5 cut(s)	558, 571, 597, 748, 810
Alw26I	GTCTC	3 cut(s)	397, 488, 592
AlwI	GGATC	2 cut(s)	671, 890
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	3 cut(s)	310, 712, 762
ApeKI	GCWGC	2 cut(s)	5, 232
ApoI	RAATTY	1 cut(s)	816
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	4 cut(s)	61, 114, 123, 373
AvaI	CYCGRG	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	764
BbsI	GAAGAC	2 cut(s)	378, 569
BbvI	GCAGC	2 cut(s)	17, 219
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	397, 488, 592
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	417, 716, 896
BfmI	CTRYAG	3 cut(s)	654, 811, 872
BfuAI	ACCTGC	1 cut(s)	865
BglI	GCCNNNNNGGC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	6, 233
BlsI	GCNGC	2 cut(s)	7, 234
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	311
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	2 cut(s)	378, 569
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 203, 710
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	202, 203, 710
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	17, 219
BshFI	GGCC	3 cut(s)	312, 714, 764
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	3 cut(s)	202, 203, 710
BsmAI	GTCTC	3 cut(s)	397, 488, 592
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	312, 714, 764
BsoBI	CYCGRG	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	403, 676, 882
BspANI	GGCC	3 cut(s)	312, 714, 764
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	876
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	2 cut(s)	671, 890
BsrDI	GCAATG	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	403, 676, 882
Bst4CI	ACNGT	5 cut(s)	129, 169, 216, 487, 784
Bst6I	CTCTTC	2 cut(s)	109, 606
BstAUI	TGTACA	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	243, 426, 513
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	406, 679, 885
BstMAI	GTCTC	3 cut(s)	397, 488, 592
BstMBI	GATC	3 cut(s)	403, 676, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 318, 720
BstSFI	CTRYAG	3 cut(s)	654, 811, 872
BstV1I	GCAGC	2 cut(s)	17, 219
BstV2I	GAAGAC	2 cut(s)	378, 569
BstX2I	RGATCY	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	312, 714, 764
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	4 cut(s)	165, 212, 321, 507
BveI	ACCTGC	1 cut(s)	865
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	4 cut(s)	424, 459, 669, 704
CviAII	CATG	2 cut(s)	31, 674
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	243, 426, 513
DpnI	GATC	3 cut(s)	405, 678, 884
DpnII	GATC	3 cut(s)	403, 676, 882
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	109, 606
EarI	CTCTTC	2 cut(s)	109, 606
Eco147I	AGGCCT	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	627
FaeI	CATG	2 cut(s)	34, 677
FalI	AAGNNNNNCTT	2 cut(s)	871, 903
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	30, 673
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	6, 233
Fsp4HI	GCNGC	2 cut(s)	6, 233
FspBI	CTAG	3 cut(s)	417, 716, 896
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	2 cut(s)	6, 233
HaeIII	GGCC	3 cut(s)	312, 714, 764
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	34, 677
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	44, 52, 670
HphI	GGTGA	4 cut(s)	61, 114, 123, 373
Hpy166II	GTNNAC	2 cut(s)	172, 507
Hpy188I	TCNGA	2 cut(s)	411, 592
Hpy188III	TCNNGA	3 cut(s)	354, 674, 695
Hpy8I	GTNNAC	2 cut(s)	172, 507
HpyAV	CCTTC	3 cut(s)	108, 351, 484
HpyCH4III	ACNGT	5 cut(s)	129, 169, 216, 487, 784
HpyCH4V	TGCA	8 cut(s)	144, 235, 281, 343, 455, 539, 565, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 318, 720
HpyF3I	CTNAG	3 cut(s)	243, 426, 513
Hsp92II	CATG	2 cut(s)	34, 677
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	403, 676, 882
LpnPI	CCDG	8 cut(s)	90, 261, 309, 353, 435, 615, 696, 860
Lsp1109I	GCAGC	2 cut(s)	17, 219
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	3 cut(s)	417, 716, 896
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	3 cut(s)	405, 678, 884
MboI	GATC	3 cut(s)	403, 676, 882
MboII	GAAGA	9 cut(s)	32, 96, 99, 383, 473, 569, 623, 812, 911
MflI	RGATCY	1 cut(s)	882
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	1 cut(s)	816
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	6 cut(s)	76, 112, 188, 347, 540, 614
Mox20I	TGGCCA	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	4 cut(s)	147, 399, 525, 560
Msp20I	TGGCCA	1 cut(s)	764
MwoI	GCNNNNNNNGC	3 cut(s)	238, 318, 720
NdeII	GATC	3 cut(s)	403, 676, 882
NlaIII	CATG	2 cut(s)	34, 677
NmuCI	GTSAC	1 cut(s)	129
NsbI	TGCGCA	1 cut(s)	434
PagI	TCATGA	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	52, 670
PkrI	GCNGC	2 cut(s)	7, 234
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	882
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	147, 399, 525, 560
SatI	GCNGC	2 cut(s)	6, 233
Sau3AI	GATC	3 cut(s)	403, 676, 882
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	3 cut(s)	654, 811, 872
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	1 cut(s)	816
SseBI	AGGCCT	1 cut(s)	714
SspMI	CTAG	3 cut(s)	417, 716, 896
StuI	AGGCCT	1 cut(s)	714
TaaI	ACNGT	5 cut(s)	129, 169, 216, 487, 784
TaqI	TCGA	2 cut(s)	520, 663
TasI	AATT	1 cut(s)	816
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	52, 670
Tru1I	TTAA	4 cut(s)	147, 399, 525, 560
Tru9I	TTAA	4 cut(s)	147, 399, 525, 560
TscAI	CASTG	4 cut(s)	172, 219, 328, 514
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	2 cut(s)	5, 232
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	5 cut(s)	47, 384, 624, 662, 812
TspRI	CASTG	4 cut(s)	172, 219, 328, 514
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	816
XspI	CTAG	3 cut(s)	417, 716, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.