RchiOBHm_Chr1g0334761

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
26871266 .. 26873832
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1764 bp
ATGGCGAATACTATGTCTTCTTTTGGGGAGTTCAACTTTGGTGGATTTCAGGATAAACTTGGCTCCACTGTTGAGAATATGGAAGTGGAGAGCATTGGGGGGAAACAAATTTATGAAGCAGAAAATTGGGGTGGATTTGGTTCCCTTTGTTCTGATTATGGAATTTATGGAAATGGCTTCTCGGATTTTACCAAATACCAACAACAAGATCAGCAGCAGCAGCCACAATTGATTTCCGACTATGGGGTCTTCGATGACATGCAGTTTCAGTTTGGTGCTCTCTCCCCACCACTTCAAGCATGCTTGGAGGAGATTGCTAAGCTTGAGAGTATCCCAACTTTAGTTCCACATGTTGAACCACCCAAGAAAGAATTAAAGAGAGACTCTTTTTCTGTAGCAGGGCTTGATCTCTTAAACAACTATGGTAGCGGGTTTAAACGCTTGAATGGAGAAAGAATTGTTGAGCCTAACCCTTATCCAGGGTACACAGAGGTGAAGAGTAGCAAGTTATCAACAGAAGAAATCGTGAGGGTGGCAGGAGCAAGGTTCGTTCGTACTGCTTCCCAAGTGTCGCCGTCTGATATACCCTCCATGCTTAGCCATCCTTTTGAACTCTCCTTTGCTGGCCTCTCCAATGAGGAGAGTAGAGATGTAGAACTTGTGGAATTCCTTCTTGCTTCAGCTGAGAAGGTAGGATATCAACAATATGAGCGTGCAAGCAAGTTGCTTGACCTCTGTGAGAGGTTGTGTTCTGATAGAGGAAATCCGGTTGAACGAGTGGTTTTCTACTTTTGTGAAGCTCTTCGAGACAAGATTGATCGAGAAACTGGTAGAACCACACACAAAAAGCAGTCATTTGATATTGATAAGGCAATGATGATCACAAATGAAACCTCCCTTGCATGTCACAACAAGATCCCTTTCTGCCAAATTGCACAATTTGCTGGAATTCAAGGCATAGTGGAAAAGGTGGTTGAGGCTAAGAAGGTTCATGTAATTGATCTGGAAATCAGGAGTGGGGTGCAATGGACAGTTCTGATGCAAGCCTTAGCATCCCGTGATTTCCCACTTGAACTTCTCAAGATAAGTGCTGTCGGAACTTCTAAAGAAACGATTCAGAATACAGGTAAGTGGTTGGAGAGTTTTGCCAAAACCATGAACTTACCCTTTTCTTTCAAAATGGTGTTGGTACCAGATATGCTAGATCTCAAAGAAGACATGTTTGAGCTGGATTCTGAGGAAACAGTTGCAGTCTACACTGAGTTCGTACTGAGGTCCATGGTCCCGCAGCCAGATCGCCTGGAGTCTTTAATGAAAGTGATAAAGAACATCCATCCATCTGTAACAGTGGTCACCGAAGTTGAGGCGAATCACAACTCACCTGTATTTGTGACCAGATTCATTGAAGCCCTTTTCTTCTTTAGTGCATTCTTTGATTGTGTGGAAACTTGTATTGAACAAAATGAGCCAATTAGAAAGAGTTTGGAGTCGCAATACTTTGGAAATGGAATTAAAAATATTGTGGCAACTGAAGGAGAGGAAAGGAAGATACGTAATGTGAAGATTGATGTTTGGAGGGCCTTTTTTGCTCGCTATGGAATGGAGGAGATGGAGTTAAGCTCATCATCCTTATACCAAGCCGAGCTGGTGGCTAAGAACTTTCCCTGTGGGAATTCTTGCACCATCACTATGGATGGGAAAACCCTGATTGCCGGATGGAAAGGAACACCTCTCCAATCTCTTTCTCTTTGGAAATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

66.11

Weight (kDa)

5.0

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 221 - 585 2.5e-82 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015682)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 1189
AccB1I GGYRCC 1 cut(s) 1189
AccI GTMKAC 1 cut(s) 1254
AciI CCGC 2 cut(s) 429, 1286
AclWI GGATC 1 cut(s) 910
AcsI RAATTY 6 cut(s) 108, 162, 665, 948, 1672, 1754
AcuI CTGAAG 2 cut(s) 663, 1551
AfaI GTAC 4 cut(s) 485, 556, 1191, 1269
AfiI CCNNNNNNNGG 2 cut(s) 243, 479
AflIII ACRYGT 2 cut(s) 349, 1218
AjnI CCWGG 2 cut(s) 478, 1299
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 6 cut(s) 322, 683, 800, 1228, 1620, 1645
AluI AGCT 6 cut(s) 322, 683, 800, 1228, 1620, 1645
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 375, 801
AlwI GGATC 1 cut(s) 910
AoxI GGCC 2 cut(s) 625, 1578
ApeKI GCWGC 4 cut(s) 214, 217, 220, 1288
ApoI RAATTY 6 cut(s) 108, 162, 665, 948, 1672, 1754
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 3 cut(s) 669, 801, 1113
Asp718I GGTACC 1 cut(s) 1189
AspS9I GGNCC 3 cut(s) 1275, 1282, 1578
AsuHPI GGTGA 3 cut(s) 505, 1345, 1371
AvaII GGWCC 2 cut(s) 1275, 1282
BanI GGYRCC 1 cut(s) 1189
BbsI GAAGAC 3 cut(s) 9, 241, 1221
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 4 cut(s) 226, 229, 232, 1300
BccI CCATC 7 cut(s) 609, 1341, 1345, 1603, 1688, 1691, 1710
BceAI ACGGC 1 cut(s) 559
BcgI CGANNNNNNTGC 2 cut(s) 1277, 1311
BciT130I CCWGG 2 cut(s) 480, 1301
BciVI GTATCC 1 cut(s) 341
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 2 cut(s) 375, 801
BfaI CTAG 1 cut(s) 1202
BfmI CTRYAG 1 cut(s) 393
BfuI GTATCC 1 cut(s) 341
BglII AGATCT 1 cut(s) 1204
BisI GCNGC 4 cut(s) 215, 218, 221, 1289
BlpI GCTNAGC 2 cut(s) 318, 596
BlsI GCNGC 4 cut(s) 216, 219, 222, 1290
Bme1390I CCNGG 2 cut(s) 480, 1301
Bme18I GGWCC 2 cut(s) 1275, 1282
BmgT120I GGNCC 3 cut(s) 1275, 1282, 1578
BmiI GGNNCC 4 cut(s) 64, 142, 1191, 1284
BmrFI CCNGG 2 cut(s) 480, 1301
BmsI GCATC 2 cut(s) 1029, 1061
BpiI GAAGAC 3 cut(s) 9, 241, 1221
BplI GAGNNNNNCTC 2 cut(s) 1604, 1636
BpmI CTGGAG 1 cut(s) 1322
Bpu10I CCTNAGC 1 cut(s) 1048
Bpu1102I GCTNAGC 2 cut(s) 318, 596
BpuEI CTTGAG 2 cut(s) 344, 1064
BsaAI YACGTR 1 cut(s) 1553
BsaJI CCNNGG 2 cut(s) 479, 1278
BsaWI WCCGGW 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 1598, 1628
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 479
Bse1I ACTGG 1 cut(s) 832
Bse3DI GCAATG 2 cut(s) 879, 1031
BseBI CCWGG 2 cut(s) 480, 1301
BseDI CCNNGG 2 cut(s) 479, 1278
BseGI GGATG 7 cut(s) 601, 1052, 1329, 1333, 1625, 1699, 1721
BseLI CCNNNNNNNGG 2 cut(s) 243, 479
BseMI GCAATG 2 cut(s) 879, 1031
BseMII CTCAG 4 cut(s) 675, 1227, 1251, 1262
BseNI ACTGG 1 cut(s) 832
BseRI GAGGAG 3 cut(s) 323, 653, 1619
BseXI GCAGC 4 cut(s) 226, 229, 232, 1300
BshFI GGCC 2 cut(s) 627, 1580
BshNI GGYRCC 1 cut(s) 1189
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 2 cut(s) 767, 1713
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 2 cut(s) 243, 479
BsmAI GTCTC 2 cut(s) 375, 801
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 1 cut(s) 1427
BsnI GGCC 2 cut(s) 627, 1580
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
Bsp1720I GCTNAGC 2 cut(s) 318, 596
Bsp19I CCATGG 1 cut(s) 1278
BspACI CCGC 2 cut(s) 429, 1286
BspANI GGCC 2 cut(s) 627, 1580
BspCNI CTCAG 4 cut(s) 676, 1228, 1252, 1263
BspLI GGNNCC 4 cut(s) 64, 142, 1191, 1284
BspPI GGATC 1 cut(s) 910
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 1189
BsrDI GCAATG 2 cut(s) 879, 1031
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 2 cut(s) 479, 1278
BssMI GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
BssT1I CCWWGG 1 cut(s) 1278
Bst2UI CCWGG 2 cut(s) 480, 1301
Bst4CI ACNGT 4 cut(s) 70, 1033, 1246, 1348
Bst6I CTCTTC 2 cut(s) 491, 807
BstAPI GCANNNNNTGC 1 cut(s) 941
BstBAI YACGTR 1 cut(s) 1553
BstC8I GCNNGC 6 cut(s) 301, 625, 714, 718, 1044, 1591
BstDEI CTNAG 9 cut(s) 318, 596, 684, 981, 1048, 1236, 1260, 1271, 1653
BstDSI CCRYGG 1 cut(s) 1278
BstEII GGTNACC 1 cut(s) 1351
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 7 cut(s) 601, 1052, 1329, 1333, 1625, 1699, 1721
BstKTI GATC 8 cut(s) 211, 409, 820, 882, 918, 1003, 1207, 1297
BstMAI GTCTC 2 cut(s) 375, 801
BstMBI GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 220, 941, 1586
BstNI CCWGG 2 cut(s) 480, 1301
BstNSI RCATGY 5 cut(s) 262, 303, 353, 906, 1222
BstPI GGTNACC 1 cut(s) 1351
BstSCI CCNGG 2 cut(s) 478, 1299
BstSFI CTRYAG 1 cut(s) 393
BstSNI TACGTA 1 cut(s) 1553
BstV1I GCAGC 4 cut(s) 226, 229, 232, 1300
BstV2I GAAGAC 3 cut(s) 9, 241, 1221
BstX2I RGATCY 2 cut(s) 915, 1204
BstXI CCANNNNNNTGG 1 cut(s) 1690
BstYI RGATCY 2 cut(s) 915, 1204
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 627, 1580
BtgI CCRYGG 1 cut(s) 1278
BtsCI GGATG 7 cut(s) 601, 1052, 1329, 1333, 1625, 1699, 1721
BtsIMutI CAGTG 3 cut(s) 66, 1257, 1353
Cac8I GCNNGC 6 cut(s) 301, 625, 714, 718, 1044, 1591
Cfr13I GGNCC 3 cut(s) 1275, 1282, 1578
Csp6I GTAC 4 cut(s) 484, 555, 1190, 1268
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 9 cut(s) 259, 300, 350, 592, 903, 992, 1156, 1219, 1279
CviQI GTAC 4 cut(s) 484, 555, 1190, 1268
DdeI CTNAG 9 cut(s) 318, 596, 684, 981, 1048, 1236, 1260, 1271, 1653
DpnI GATC 8 cut(s) 210, 408, 819, 881, 917, 1002, 1206, 1296
DpnII GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
DraI TTTAAA 1 cut(s) 436
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 491, 807
EarI CTCTTC 2 cut(s) 491, 807
Eco105I TACGTA 1 cut(s) 1553
Eco130I CCWWGG 1 cut(s) 1278
Eco32I GATATC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 1275, 1282
Eco57I CTGAAG 2 cut(s) 663, 1551
Eco91I GGTNACC 1 cut(s) 1351
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 1578
EcoO65I GGTNACC 1 cut(s) 1351
EcoRI GAATTC 3 cut(s) 665, 948, 1672
EcoRII CCWGG 2 cut(s) 478, 1299
EcoRV GATATC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 1278
ErhI CCWWGG 1 cut(s) 1278
FaeI CATG 9 cut(s) 262, 303, 353, 595, 906, 995, 1159, 1222, 1282
FaqI GGGAC 1 cut(s) 1268
FatI CATG 9 cut(s) 258, 299, 349, 591, 902, 991, 1155, 1218, 1278
FauI CCCGC 2 cut(s) 422, 1293
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 1254
Fnu4HI GCNGC 4 cut(s) 215, 218, 221, 1289
FokI GGATG 7 cut(s) 588, 1039, 1316, 1320, 1612, 1706, 1728
Fsp4HI GCNGC 4 cut(s) 215, 218, 221, 1289
FspBI CTAG 1 cut(s) 1202
GluI GCNGC 4 cut(s) 215, 218, 221, 1289
GsuI CTGGAG 1 cut(s) 1322
HaeIII GGCC 2 cut(s) 627, 1580
HapII CCGG 2 cut(s) 767, 1713
Hin1II CATG 9 cut(s) 262, 303, 353, 595, 906, 995, 1159, 1222, 1282
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 7 cut(s) 383, 1114, 1232, 1304, 1369, 1398, 1487
HpaII CCGG 2 cut(s) 767, 1713
HphI GGTGA 3 cut(s) 505, 1345, 1371
Hpy166II GTNNAC 2 cut(s) 486, 1255
Hpy188I TCNGA 9 cut(s) 154, 184, 238, 580, 754, 1038, 1097, 1119, 1237
Hpy188III TCNNGA 7 cut(s) 50, 526, 806, 821, 1004, 1012, 1081
Hpy8I GTNNAC 2 cut(s) 486, 1255
HpyAV CCTTC 4 cut(s) 680, 682, 979, 1526
HpyCH4III ACNGT 4 cut(s) 70, 1033, 1246, 1348
HpyCH4IV ACGT 1 cut(s) 1552
HpyCH4V TGCA 9 cut(s) 262, 716, 902, 935, 1024, 1042, 1250, 1427, 1680
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 941, 1586
HpyF3I CTNAG 9 cut(s) 318, 596, 684, 981, 1048, 1236, 1260, 1271, 1653
HpySE526I ACGT 1 cut(s) 1552
Hsp92II CATG 9 cut(s) 262, 303, 353, 595, 906, 995, 1159, 1222, 1282
KpnI GGTACC 1 cut(s) 1193
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 68, 539
Lsp1109I GCAGC 4 cut(s) 226, 229, 232, 1300
LweI GCATC 2 cut(s) 1029, 1061
MaeI CTAG 1 cut(s) 1202
MaeII ACGT 1 cut(s) 1552
MaeIII GTNAC 4 cut(s) 905, 1342, 1351, 1390
MalI GATC 8 cut(s) 210, 408, 819, 881, 917, 1002, 1206, 1296
MboI GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
MboII GAAGA 9 cut(s) 9, 241, 508, 530, 794, 1226, 1408, 1558, 1573
MfeI CAATTG 1 cut(s) 227
MflI RGATCY 2 cut(s) 915, 1204
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 3 cut(s) 377, 1313, 1496
MmeI TCCRAC 3 cut(s) 261, 1075, 1116
MroXI GAANNNNTTC 3 cut(s) 669, 801, 1113
MseI TTAA 6 cut(s) 374, 413, 435, 1310, 1512, 1616
MslI CAYNNNNRTG 2 cut(s) 491, 1688
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 767, 1713
MspR9I CCNGG 2 cut(s) 480, 1301
MssI GTTTAAAC 1 cut(s) 436
MunI CAATTG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 1427
MvaI CCWGG 2 cut(s) 480, 1301
MwoI GCNNNNNNNGC 3 cut(s) 220, 941, 1586
NcoI CCATGG 1 cut(s) 1278
NdeII GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
NlaIII CATG 9 cut(s) 262, 303, 353, 595, 906, 995, 1159, 1222, 1282
NlaIV GGNNCC 4 cut(s) 64, 142, 1191, 1284
NmeAIII GCCGAG 1 cut(s) 1666
NmuCI GTSAC 3 cut(s) 905, 1351, 1390
NspI RCATGY 5 cut(s) 262, 303, 353, 906, 1222
OliI CACNNNNGTG 1 cut(s) 491
PaeI GCATGC 1 cut(s) 303
PciI ACATGT 2 cut(s) 349, 1218
PciSI GCTCTTC 1 cut(s) 807
PctI GAATGC 1 cut(s) 1427
PdmI GAANNNNTTC 3 cut(s) 669, 801, 1113
PfeI GAWTC 4 cut(s) 1114, 1232, 1369, 1398
PkrI GCNGC 4 cut(s) 216, 219, 222, 1290
PleI GAGTC 3 cut(s) 377, 1312, 1495
PmeI GTTTAAAC 1 cut(s) 436
PpsI GAGTC 3 cut(s) 377, 1312, 1495
Ppu21I YACGTR 1 cut(s) 1553
PscI ACATGT 2 cut(s) 349, 1218
Psp6I CCWGG 2 cut(s) 478, 1299
PspEI GGTNACC 1 cut(s) 1351
PspGI CCWGG 2 cut(s) 478, 1299
PspN4I GGNNCC 4 cut(s) 64, 142, 1191, 1284
PspPI GGNCC 3 cut(s) 1275, 1282, 1578
PsuI RGATCY 2 cut(s) 915, 1204
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 4 cut(s) 485, 556, 1191, 1269
RsaNI GTAC 4 cut(s) 484, 555, 1190, 1268
RseI CAYNNNNRTG 2 cut(s) 491, 1688
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 6 cut(s) 374, 413, 435, 1310, 1512, 1616
SatI GCNGC 4 cut(s) 215, 218, 221, 1289
Sau3AI GATC 8 cut(s) 208, 406, 817, 879, 915, 1000, 1204, 1294
Sau96I GGNCC 3 cut(s) 1275, 1282, 1578
SchI GAGTC 3 cut(s) 377, 1313, 1496
ScrFI CCNGG 2 cut(s) 480, 1301
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 2 cut(s) 1029, 1061
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 1275, 1282
SmiMI CAYNNNNRTG 2 cut(s) 491, 1688
SmlI CTYRAG 2 cut(s) 323, 1079
SmoI CTYRAG 2 cut(s) 323, 1079
SnaBI TACGTA 1 cut(s) 1553
SphI GCATGC 1 cut(s) 303
SsiI CCGC 2 cut(s) 429, 1286
SspI AATATT 1 cut(s) 1519
SspMI CTAG 1 cut(s) 1202
StyD4I CCNGG 2 cut(s) 478, 1299
StyI CCWWGG 1 cut(s) 1278
TaaI ACNGT 4 cut(s) 70, 1033, 1246, 1348
TaiI ACGT 1 cut(s) 1555
TaqI TCGA 3 cut(s) 252, 805, 820
TfiI GAWTC 4 cut(s) 1114, 1232, 1369, 1398
Tru1I TTAA 6 cut(s) 374, 413, 435, 1310, 1512, 1616
Tru9I TTAA 6 cut(s) 374, 413, 435, 1310, 1512, 1616
TscAI CASTG 3 cut(s) 73, 1264, 1353
TseFI GTSAC 3 cut(s) 905, 1351, 1390
TseI GCWGC 4 cut(s) 214, 217, 220, 1288
Tsp45I GTSAC 3 cut(s) 905, 1351, 1390
TspDTI ATGAA 6 cut(s) 129, 903, 980, 1172, 1328, 1390
TspRI CASTG 3 cut(s) 73, 1264, 1353
VpaK11BI GGWCC 2 cut(s) 1275, 1282
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 6 cut(s) 108, 162, 665, 948, 1672, 1754
XceI RCATGY 5 cut(s) 262, 303, 353, 906, 1222
XmiI GTMKAC 1 cut(s) 1254
XmnI GAANNNNTTC 3 cut(s) 669, 801, 1113
XspI CTAG 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.