Replication factor C subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08091 |
| malus_domestica | MD02G1230000.v1.1 MD07G1082400.v1.1 |
| prunus_persica | Prupe.2G108000_v2.0.a1 |
| pyrus_communis | pycom07g06570 pycom07g06580 |
| rosa_chinensis | RchiOBHm_Chr1g0341191 |
| rosa_laevigata | RLG00000029069 |
| rosa_multiflora | Rmu_sc0004092.1_g000026 Rmu_sc0010892.1_g000010 |
| rosa_roxburghii | Rroxscaffold_4G00311790 |
| rosa_rugosa | Rorug01G0159600.1 |
| rosa_samantha | Rh1AG173900 Rh1BG141800 Rh1CG161700 Rh1DG173800 |
| rosa_wichuraiana | Rw1G014440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 769 |
| Acc36I | ACCTGC | 2 cut(s) | 586, 769 |
| AciI | CCGC | 1 cut(s) | 230 |
| AclWI | GGATC | 1 cut(s) | 704 |
| AcsI | RAATTY | 5 cut(s) | 263, 325, 539, 832, 1001 |
| AcuI | CTGAAG | 2 cut(s) | 173, 590 |
| AfaI | GTAC | 3 cut(s) | 17, 211, 1027 |
| AgsI | TTSAA | 7 cut(s) | 237, 254, 509, 550, 602, 749, 804 |
| AjnI | CCWGG | 1 cut(s) | 716 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 563, 595 |
| AleI | CACNNNNGTG | 1 cut(s) | 812 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 367, 399 |
| AluBI | AGCT | 8 cut(s) | 38, 94, 187, 223, 484, 505, 568, 1011 |
| AluI | AGCT | 8 cut(s) | 38, 94, 187, 223, 484, 505, 568, 1011 |
| Alw21I | GWGCWC | 1 cut(s) | 70 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AlwI | GGATC | 1 cut(s) | 704 |
| AoxI | GGCC | 2 cut(s) | 192, 366 |
| ApeKI | GCWGC | 2 cut(s) | 48, 1011 |
| ApoI | RAATTY | 5 cut(s) | 263, 325, 539, 832, 1001 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 918 |
| AspS9I | GGNCC | 1 cut(s) | 822 |
| AvaII | GGWCC | 1 cut(s) | 822 |
| BbsI | GAAGAC | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 70 |
| BbvI | GCAGC | 2 cut(s) | 60, 998 |
| BccI | CCATC | 3 cut(s) | 203, 417, 721 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 1 cut(s) | 718 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 557 |
| BfmI | CTRYAG | 1 cut(s) | 984 |
| BfuAI | ACCTGC | 2 cut(s) | 586, 769 |
| BisI | GCNGC | 3 cut(s) | 49, 230, 1012 |
| BlsI | GCNGC | 3 cut(s) | 50, 231, 1013 |
| Bme1390I | CCNGG | 1 cut(s) | 718 |
| Bme18I | GGWCC | 1 cut(s) | 822 |
| BmgT120I | GGNCC | 1 cut(s) | 822 |
| BmrFI | CCNGG | 1 cut(s) | 718 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 151 |
| BpuEI | CTTGAG | 1 cut(s) | 760 |
| BsaJI | CCNNGG | 1 cut(s) | 496 |
| Bse1I | ACTGG | 1 cut(s) | 309 |
| BseBI | CCWGG | 1 cut(s) | 718 |
| BseDI | CCNNGG | 1 cut(s) | 496 |
| BseGI | GGATG | 3 cut(s) | 428, 436, 713 |
| BseMII | CTCAG | 1 cut(s) | 765 |
| BseNI | ACTGG | 1 cut(s) | 309 |
| BseXI | GCAGC | 2 cut(s) | 60, 998 |
| BsgI | GTGCAG | 3 cut(s) | 67, 747, 908 |
| BshFI | GGCC | 2 cut(s) | 194, 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 70 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsnI | GGCC | 2 cut(s) | 194, 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 70 |
| Bsp143I | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| BspACI | CCGC | 1 cut(s) | 230 |
| BspANI | GGCC | 2 cut(s) | 194, 368 |
| BspCNI | CTCAG | 1 cut(s) | 766 |
| BspHI | TCATGA | 1 cut(s) | 1048 |
| BspMAI | CTGCAG | 1 cut(s) | 988 |
| BspMI | ACCTGC | 2 cut(s) | 586, 769 |
| BspPI | GGATC | 1 cut(s) | 704 |
| BspQI | GCTCTTC | 1 cut(s) | 459 |
| BsrI | ACTGG | 1 cut(s) | 309 |
| BssECI | CCNNGG | 1 cut(s) | 496 |
| BssMI | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| Bst2UI | CCWGG | 1 cut(s) | 718 |
| Bst4CI | ACNGT | 6 cut(s) | 15, 214, 338, 629, 735, 868 |
| Bst6I | CTCTTC | 1 cut(s) | 459 |
| BstDEI | CTNAG | 2 cut(s) | 774, 906 |
| BstDSI | CCRYGG | 1 cut(s) | 496 |
| BstF5I | GGATG | 3 cut(s) | 428, 436, 713 |
| BstKTI | GATC | 5 cut(s) | 75, 406, 462, 712, 951 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMBI | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 1 cut(s) | 718 |
| BstNSI | RCATGY | 2 cut(s) | 595, 616 |
| BstSCI | CCNGG | 1 cut(s) | 716 |
| BstSFI | CTRYAG | 1 cut(s) | 984 |
| BstV1I | GCAGC | 2 cut(s) | 60, 998 |
| BstV2I | GAAGAC | 1 cut(s) | 151 |
| BsuRI | GGCC | 2 cut(s) | 194, 368 |
| BtgI | CCRYGG | 1 cut(s) | 496 |
| BtsCI | GGATG | 3 cut(s) | 428, 436, 713 |
| BtsIMutI | CAGTG | 3 cut(s) | 68, 665, 807 |
| BveI | ACCTGC | 2 cut(s) | 586, 769 |
| CciI | TCATGA | 1 cut(s) | 1048 |
| Cfr13I | GGNCC | 1 cut(s) | 822 |
| Csp6I | GTAC | 3 cut(s) | 16, 210, 1026 |
| CviAII | CATG | 6 cut(s) | 524, 592, 613, 767, 826, 1049 |
| CviQI | GTAC | 3 cut(s) | 16, 210, 1026 |
| DdeI | CTNAG | 2 cut(s) | 774, 906 |
| DpnI | GATC | 5 cut(s) | 74, 405, 461, 711, 950 |
| DpnII | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| DraI | TTTAAA | 2 cut(s) | 261, 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 459 |
| EarI | CTCTTC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 1 cut(s) | 822 |
| Eco57I | CTGAAG | 2 cut(s) | 173, 590 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 1 cut(s) | 716 |
| FaeI | CATG | 6 cut(s) | 527, 595, 616, 770, 829, 1052 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 146, 178 |
| FatI | CATG | 6 cut(s) | 523, 591, 612, 766, 825, 1048 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 230, 1012 |
| FokI | GGATG | 3 cut(s) | 435, 443, 700 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 230, 1012 |
| FspBI | CTAG | 1 cut(s) | 557 |
| GluI | GCNGC | 3 cut(s) | 49, 230, 1012 |
| HaeIII | GGCC | 2 cut(s) | 194, 368 |
| Hin1II | CATG | 6 cut(s) | 527, 595, 616, 770, 829, 1052 |
| HindIII | AAGCTT | 2 cut(s) | 185, 503 |
| HinfI | GANTC | 3 cut(s) | 770, 914, 929 |
| Hpy188I | TCNGA | 6 cut(s) | 175, 516, 775, 796, 913, 948 |
| Hpy188III | TCNNGA | 7 cut(s) | 199, 536, 686, 739, 843, 883, 1049 |
| HpyAV | CCTTC | 3 cut(s) | 243, 275, 743 |
| HpyCH4III | ACNGT | 6 cut(s) | 15, 214, 338, 629, 735, 868 |
| HpyCH4V | TGCA | 8 cut(s) | 48, 440, 523, 595, 764, 891, 925, 986 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 2 cut(s) | 774, 906 |
| Hsp92II | CATG | 6 cut(s) | 527, 595, 616, 770, 829, 1052 |
| Kzo9I | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| LguI | GCTCTTC | 1 cut(s) | 459 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 998 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 557 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MalI | GATC | 5 cut(s) | 74, 405, 461, 711, 950 |
| MboI | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| MboII | GAAGA | 7 cut(s) | 151, 154, 413, 476, 583, 733, 943 |
| MhlI | GDGCHC | 1 cut(s) | 70 |
| MlyI | GAGTC | 1 cut(s) | 779 |
| MnlI | CCTC | 4 cut(s) | 76, 358, 421, 735 |
| MroXI | GAANNNNTTC | 1 cut(s) | 918 |
| MseI | TTAA | 5 cut(s) | 120, 260, 396, 783, 960 |
| MslI | CAYNNNNRTG | 1 cut(s) | 812 |
| MspR9I | CCNGG | 1 cut(s) | 718 |
| MvaI | CCWGG | 1 cut(s) | 718 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NdeII | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| NlaIII | CATG | 6 cut(s) | 527, 595, 616, 770, 829, 1052 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| NspI | RCATGY | 2 cut(s) | 595, 616 |
| OliI | CACNNNNGTG | 1 cut(s) | 812 |
| PagI | TCATGA | 1 cut(s) | 1048 |
| PaqCI | CACCTGC | 1 cut(s) | 769 |
| PciSI | GCTCTTC | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 918 |
| PfeI | GAWTC | 2 cut(s) | 914, 929 |
| PfoI | TCCNGGA | 1 cut(s) | 716 |
| PkrI | GCNGC | 3 cut(s) | 50, 231, 1013 |
| PleI | GAGTC | 1 cut(s) | 778 |
| PpsI | GAGTC | 1 cut(s) | 778 |
| Psp6I | CCWGG | 1 cut(s) | 716 |
| PspGI | CCWGG | 1 cut(s) | 716 |
| PspPI | GGNCC | 1 cut(s) | 822 |
| PstI | CTGCAG | 1 cut(s) | 988 |
| RsaI | GTAC | 3 cut(s) | 17, 211, 1027 |
| RsaNI | GTAC | 3 cut(s) | 16, 210, 1026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 812 |
| SapI | GCTCTTC | 1 cut(s) | 459 |
| SaqAI | TTAA | 5 cut(s) | 120, 260, 396, 783, 960 |
| SatI | GCNGC | 3 cut(s) | 49, 230, 1012 |
| Sau3AI | GATC | 5 cut(s) | 72, 403, 459, 709, 948 |
| Sau96I | GGNCC | 1 cut(s) | 822 |
| SchI | GAGTC | 1 cut(s) | 779 |
| ScrFI | CCNGG | 1 cut(s) | 718 |
| SduI | GDGCHC | 1 cut(s) | 70 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 984 |
| SinI | GGWCC | 1 cut(s) | 822 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 812 |
| SmlI | CTYRAG | 1 cut(s) | 739 |
| SmoI | CTYRAG | 1 cut(s) | 739 |
| SsiI | CCGC | 1 cut(s) | 230 |
| SspMI | CTAG | 1 cut(s) | 557 |
| StyD4I | CCNGG | 1 cut(s) | 716 |
| TaaI | ACNGT | 6 cut(s) | 15, 214, 338, 629, 735, 868 |
| TaqI | TCGA | 4 cut(s) | 363, 462, 679, 842 |
| TatI | WGTACW | 2 cut(s) | 15, 209 |
| TauI | GCSGC | 1 cut(s) | 232 |
| TfiI | GAWTC | 2 cut(s) | 914, 929 |
| Tru1I | TTAA | 5 cut(s) | 120, 260, 396, 783, 960 |
| Tru9I | TTAA | 5 cut(s) | 120, 260, 396, 783, 960 |
| TscAI | CASTG | 3 cut(s) | 75, 672, 814 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 2 cut(s) | 48, 1011 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 5 cut(s) | 17, 348, 447, 532, 636 |
| TspGWI | ACGGA | 2 cut(s) | 332, 485 |
| TspRI | CASTG | 3 cut(s) | 75, 672, 814 |
| VpaK11BI | GGWCC | 1 cut(s) | 822 |
| XapI | RAATTY | 5 cut(s) | 263, 325, 539, 832, 1001 |
| XceI | RCATGY | 2 cut(s) | 595, 616 |
| XmnI | GAANNNNTTC | 1 cut(s) | 918 |
| XspI | CTAG | 1 cut(s) | 557 |