DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0342911 RchiOBHm_Chr4g0433091 |
| rosa_multiflora | Rmu_sc0000361.1_g000021 Rmu_sc0001291.1_g000003 |
| rosa_rugosa | Rorug01G0181500 Rorug01G0181600 |
| rosa_samantha | Rh4AG319100 Rh4DG322500 |
| rosa_wichuraiana | Rw5G048190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 118 |
| AccIII | TCCGGA | 1 cut(s) | 307 |
| AciI | CCGC | 2 cut(s) | 24, 35 |
| AcoI | YGGCCR | 1 cut(s) | 252 |
| AgsI | TTSAA | 2 cut(s) | 10, 160 |
| AluBI | AGCT | 1 cut(s) | 313 |
| AluI | AGCT | 1 cut(s) | 313 |
| Aor13HI | TCCGGA | 1 cut(s) | 307 |
| AoxI | GGCC | 1 cut(s) | 252 |
| AspLEI | GCGC | 1 cut(s) | 32 |
| BalI | TGGCCA | 1 cut(s) | 254 |
| BccI | CCATC | 1 cut(s) | 179 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BfuAI | ACCTGC | 1 cut(s) | 118 |
| BglII | AGATCT | 1 cut(s) | 246 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| BmsI | GCATC | 1 cut(s) | 133 |
| BsaWI | WCCGGW | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 18 |
| BseAI | TCCGGA | 1 cut(s) | 307 |
| BseGI | GGATG | 1 cut(s) | 84 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 18 |
| BshFI | GGCC | 1 cut(s) | 254 |
| BsiSI | CCGG | 1 cut(s) | 308 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsnI | GGCC | 1 cut(s) | 254 |
| Bsp13I | TCCGGA | 1 cut(s) | 307 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 2 cut(s) | 24, 35 |
| BspANI | GGCC | 1 cut(s) | 254 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspEI | TCCGGA | 1 cut(s) | 307 |
| BspMI | ACCTGC | 1 cut(s) | 118 |
| BsrI | ACTGG | 1 cut(s) | 18 |
| BssMI | GATC | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| Bst6I | CTCTTC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 148 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstF5I | GGATG | 1 cut(s) | 84 |
| BstHHI | GCGC | 1 cut(s) | 32 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 1 cut(s) | 25 |
| BveI | ACCTGC | 1 cut(s) | 118 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 148 |
| CfoI | GCGC | 1 cut(s) | 32 |
| CseI | GACGC | 1 cut(s) | 36 |
| CviAII | CATG | 2 cut(s) | 115, 290 |
| CviJI | RGCY | 2 cut(s) | 254, 313 |
| CviKI_1 | RGCY | 2 cut(s) | 254, 313 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| EaeI | YGGCCR | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 5 |
| EarI | CTCTTC | 1 cut(s) | 5 |
| FaeI | CATG | 2 cut(s) | 118, 293 |
| FaiI | YATR | 9 cut(s) | 45, 63, 81, 98, 116, 273, 291, 296, 319 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 2 cut(s) | 114, 289 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| GlaI | GCGC | 1 cut(s) | 31 |
| GluI | GCNGC | 1 cut(s) | 24 |
| HaeIII | GGCC | 1 cut(s) | 254 |
| HapII | CCGG | 1 cut(s) | 308 |
| HgaI | GACGC | 1 cut(s) | 36 |
| HhaI | GCGC | 1 cut(s) | 32 |
| Hin1II | CATG | 2 cut(s) | 118, 293 |
| Hin6I | GCGC | 1 cut(s) | 30 |
| HinP1I | GCGC | 1 cut(s) | 30 |
| HincII | GTYRAC | 1 cut(s) | 120 |
| HindII | GTYRAC | 1 cut(s) | 120 |
| HpaII | CCGG | 1 cut(s) | 308 |
| Hpy166II | GTNNAC | 2 cut(s) | 120, 133 |
| Hpy188I | TCNGA | 1 cut(s) | 166 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy8I | GTNNAC | 2 cut(s) | 120, 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4V | TGCA | 3 cut(s) | 146, 289, 335 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| Hsp92II | CATG | 2 cut(s) | 118, 293 |
| HspAI | GCGC | 1 cut(s) | 30 |
| Kpn2I | TCCGGA | 1 cut(s) | 307 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| LpnPI | CCDG | 5 cut(s) | 31, 40, 113, 222, 321 |
| LweI | GCATC | 1 cut(s) | 133 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 2 cut(s) | 22, 165 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MlsI | TGGCCA | 1 cut(s) | 254 |
| MluCI | AATT | 4 cut(s) | 174, 205, 216, 223 |
| MluNI | TGGCCA | 1 cut(s) | 254 |
| MnlI | CCTC | 3 cut(s) | 61, 277, 323 |
| Mox20I | TGGCCA | 1 cut(s) | 254 |
| MroI | TCCGGA | 1 cut(s) | 307 |
| MscI | TGGCCA | 1 cut(s) | 254 |
| Msp20I | TGGCCA | 1 cut(s) | 254 |
| MspI | CCGG | 1 cut(s) | 308 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 2 cut(s) | 118, 293 |
| NmeAIII | GCCGAG | 1 cut(s) | 63 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SetI | ASST | 6 cut(s) | 68, 132, 268, 288, 315, 334 |
| SfaNI | GCATC | 1 cut(s) | 133 |
| Sse9I | AATT | 4 cut(s) | 174, 205, 216, 223 |
| SsiI | CCGC | 2 cut(s) | 24, 35 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TasI | AATT | 4 cut(s) | 174, 205, 216, 223 |
| TauI | GCSGC | 1 cut(s) | 26 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspRI | CASTG | 1 cut(s) | 25 |