Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001291.1

Orthogroup ID

OG0018954

Physical Location & Seq

Genomic Coordinates Reverse (-)

9541 .. 11136

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001291.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgtcgccatcgtcgtctctccccaaacctccgacctcgccgtctcccttagacacctctgcgatgccattaaagagttccagtgccgccagcgcaccgccgagttatgcgtcctcacttacccataggtcttacacatctcatatcatccaccactccaaaaagattgatagtatcatgtcaacaaggcaggtaaacgaaaatgatgcaagcagaagattgaagtcagagtttctaattcagtttgatggagtgacatctaatcctaatgatcgagtaattgtgaattgccaatacccttttgaagacaaccatggtcgttcaagaacggccgagaaagcttctcttgcgtttagactgatatggtcgttcatgaacggccgaagtctcaacgtgcttggctgctgcagtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

9.41

Isoelectric Point (pI)

66.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018954)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342911 RchiOBHm_Chr4g0433091
rosa_multiflora	Rmu_sc0000361.1_g000021 Rmu_sc0001291.1_g000003
rosa_rugosa	Rorug01G0181500 Rorug01G0181600
rosa_samantha	Rh4AG319100 Rh4DG322500
rosa_wichuraiana	Rw5G048190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	2 cut(s)	87, 98
AcoI	YGGCCR	2 cut(s)	330, 379
AgsI	TTSAA	3 cut(s)	223, 305, 324
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	21, 48, 392
AoxI	GGCC	2 cut(s)	330, 379
ApeKI	GCWGC	2 cut(s)	402, 405
AspLEI	GCGC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	389, 392
BccI	CCATC	2 cut(s)	16, 242
BceAI	ACGGC	3 cut(s)	25, 345, 394
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcoDI	GTCTC	3 cut(s)	21, 48, 392
BfmI	CTRYAG	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	87, 403, 406
BlsI	GCNGC	3 cut(s)	88, 404, 407
BmsI	GCATC	2 cut(s)	54, 196
BpiI	GAAGAC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	81
BseX3I	CGGCCG	2 cut(s)	330, 379
BseXI	GCAGC	2 cut(s)	389, 392
Bsh1285I	CGRYCG	2 cut(s)	333, 382
BshFI	GGCC	2 cut(s)	332, 381
BsiEI	CGRYCG	2 cut(s)	333, 382
BsmAI	GTCTC	3 cut(s)	21, 48, 392
BsmBI	CGTCTC	2 cut(s)	21, 48
BsnI	GGCC	2 cut(s)	332, 381
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	87, 98
BspANI	GGCC	2 cut(s)	332, 381
BspHI	TCATGA	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	91, 211
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	3 cut(s)	21, 48, 392
BstMBI	GATC	1 cut(s)	271
BstMCI	CGRYCG	2 cut(s)	333, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 338, 347
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	389, 392
BstV2I	GAAGAC	1 cut(s)	312
BstZI	CGGCCG	2 cut(s)	330, 379
BsuRI	GGCC	2 cut(s)	332, 381
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	91, 211
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	1 cut(s)	95
CseI	GACGC	1 cut(s)	99
CviAII	CATG	3 cut(s)	178, 314, 373
CviJI	RGCY	4 cut(s)	332, 341, 381, 402
CviKI_1	RGCY	4 cut(s)	332, 341, 381, 402
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	330, 379
EagI	CGGCCG	2 cut(s)	330, 379
EclXI	CGGCCG	2 cut(s)	330, 379
Eco130I	CCWWGG	1 cut(s)	313
Eco52I	CGGCCG	2 cut(s)	330, 379
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	2 cut(s)	21, 48
FaeI	CATG	3 cut(s)	181, 317, 376
FaiI	YATR	7 cut(s)	108, 126, 144, 179, 315, 364, 374
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	3 cut(s)	177, 313, 372
Fnu4HI	GCNGC	3 cut(s)	87, 403, 406
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	87, 403, 406
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	87, 403, 406
HaeIII	GGCC	2 cut(s)	332, 381
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	181, 317, 376
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	183, 196
Hpy188I	TCNGA	2 cut(s)	33, 229
Hpy188III	TCNNGA	2 cut(s)	324, 373
Hpy8I	GTNNAC	2 cut(s)	183, 196
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	209, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 338, 347
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	181, 317, 376
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	3 cut(s)	94, 103, 176
Lsp1109I	GCAGC	2 cut(s)	389, 392
LweI	GCATC	2 cut(s)	54, 196
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	228, 317
MluCI	AATT	3 cut(s)	237, 279, 286
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	39, 46, 67, 124
MseI	TTAA	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	92, 338, 347
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	181, 317, 376
NmeAIII	GCCGAG	2 cut(s)	126, 358
NmuCI	GTSAC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	88, 404, 407
PstI	CTGCAG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	3 cut(s)	87, 403, 406
Sau3AI	GATC	1 cut(s)	271
SetI	ASST	7 cut(s)	31, 38, 59, 131, 195, 343, 396
SfaNI	GCATC	2 cut(s)	54, 196
SfcI	CTRYAG	1 cut(s)	406
Sse9I	AATT	3 cut(s)	237, 279, 286
SsiI	CCGC	2 cut(s)	87, 98
StyI	CCWWGG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	237, 279, 286
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	402, 405
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	361, 389
TspRI	CASTG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.