DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0342911 RchiOBHm_Chr4g0433091 |
| rosa_multiflora | Rmu_sc0000361.1_g000021 Rmu_sc0001291.1_g000003 |
| rosa_rugosa | Rorug01G0181500 Rorug01G0181600 |
| rosa_samantha | Rh4AG319100 Rh4DG322500 |
| rosa_wichuraiana | Rw5G048190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 202 |
| AccII | CGCG | 1 cut(s) | 32 |
| AciI | CCGC | 3 cut(s) | 30, 57, 68 |
| AcoI | YGGCCR | 1 cut(s) | 168 |
| AcyI | GRCGYC | 1 cut(s) | 24 |
| AgsI | TTSAA | 1 cut(s) | 43 |
| AluBI | AGCT | 3 cut(s) | 182, 197, 229 |
| AluI | AGCT | 3 cut(s) | 182, 197, 229 |
| Alw21I | GWGCWC | 1 cut(s) | 67 |
| Alw26I | GTCTC | 1 cut(s) | 18 |
| Alw44I | GTGCAC | 1 cut(s) | 63 |
| AoxI | GGCC | 1 cut(s) | 168 |
| ApaLI | GTGCAC | 1 cut(s) | 63 |
| AspLEI | GCGC | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 1 cut(s) | 78 |
| BaeGI | GKGCMC | 1 cut(s) | 67 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BanI | GGYRCC | 1 cut(s) | 202 |
| Bbv12I | GWGCWC | 1 cut(s) | 67 |
| BbvCI | CCTCAGC | 1 cut(s) | 198 |
| BcoDI | GTCTC | 1 cut(s) | 18 |
| BfaI | CTAG | 1 cut(s) | 20 |
| BfoI | RGCGCY | 1 cut(s) | 57 |
| BglII | AGATCT | 1 cut(s) | 162 |
| BisI | GCNGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 1 cut(s) | 58 |
| BmiI | GGNNCC | 1 cut(s) | 204 |
| BmsI | GCATC | 1 cut(s) | 24 |
| Bpu10I | CCTNAGC | 1 cut(s) | 198 |
| BsaHI | GRCGYC | 1 cut(s) | 24 |
| Bse1I | ACTGG | 1 cut(s) | 60 |
| BseGI | GGATG | 1 cut(s) | 117 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 1 cut(s) | 60 |
| BseSI | GKGCMC | 1 cut(s) | 67 |
| Bsh1236I | CGCG | 1 cut(s) | 32 |
| BshFI | GGCC | 1 cut(s) | 170 |
| BshNI | GGYRCC | 1 cut(s) | 202 |
| BsiHKAI | GWGCWC | 1 cut(s) | 67 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BsmAI | GTCTC | 1 cut(s) | 18 |
| BsmBI | CGTCTC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsnI | GGCC | 1 cut(s) | 170 |
| Bsp1286I | GDGCHC | 1 cut(s) | 67 |
| Bsp143I | GATC | 1 cut(s) | 162 |
| BspACI | CCGC | 3 cut(s) | 30, 57, 68 |
| BspANI | GGCC | 1 cut(s) | 170 |
| BspCNI | CTCAG | 1 cut(s) | 190 |
| BspFNI | CGCG | 1 cut(s) | 32 |
| BspLI | GGNNCC | 1 cut(s) | 204 |
| BspT107I | GGYRCC | 1 cut(s) | 202 |
| BsrI | ACTGG | 1 cut(s) | 60 |
| BssMI | GATC | 1 cut(s) | 162 |
| BssNI | GRCGYC | 1 cut(s) | 24 |
| Bst6I | CTCTTC | 1 cut(s) | 38 |
| BstACI | GRCGYC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 198 |
| BstF5I | GGATG | 1 cut(s) | 117 |
| BstFNI | CGCG | 1 cut(s) | 32 |
| BstH2I | RGCGCY | 1 cut(s) | 57 |
| BstHHI | GCGC | 1 cut(s) | 56 |
| BstKTI | GATC | 1 cut(s) | 165 |
| BstMAI | GTCTC | 1 cut(s) | 18 |
| BstMBI | GATC | 1 cut(s) | 162 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 62 |
| BstSLI | GKGCMC | 1 cut(s) | 67 |
| BstUI | CGCG | 1 cut(s) | 32 |
| BstX2I | RGATCY | 1 cut(s) | 162 |
| BstYI | RGATCY | 1 cut(s) | 162 |
| BsuRI | GGCC | 1 cut(s) | 170 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 1 cut(s) | 67 |
| CfoI | GCGC | 1 cut(s) | 56 |
| CseI | GACGC | 2 cut(s) | 32, 69 |
| CviJI | RGCY | 4 cut(s) | 170, 182, 197, 229 |
| CviKI_1 | RGCY | 4 cut(s) | 170, 182, 197, 229 |
| DdeI | CTNAG | 1 cut(s) | 198 |
| DpnI | GATC | 1 cut(s) | 164 |
| DpnII | GATC | 1 cut(s) | 162 |
| EaeI | YGGCCR | 1 cut(s) | 168 |
| Eam1104I | CTCTTC | 1 cut(s) | 38 |
| EarI | CTCTTC | 1 cut(s) | 38 |
| Esp3I | CGTCTC | 1 cut(s) | 18 |
| FaiI | YATR | 6 cut(s) | 78, 96, 114, 189, 212, 235 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| Fnu4HI | GCNGC | 1 cut(s) | 57 |
| FokI | GGATG | 1 cut(s) | 104 |
| Fsp4HI | GCNGC | 1 cut(s) | 57 |
| FspBI | CTAG | 1 cut(s) | 20 |
| GlaI | GCGC | 1 cut(s) | 55 |
| GluI | GCNGC | 1 cut(s) | 57 |
| HaeII | RGCGCY | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 170 |
| HgaI | GACGC | 2 cut(s) | 32, 69 |
| HhaI | GCGC | 1 cut(s) | 56 |
| Hin1I | GRCGYC | 1 cut(s) | 24 |
| Hin6I | GCGC | 1 cut(s) | 54 |
| HinP1I | GCGC | 1 cut(s) | 54 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 78 |
| Hpy166II | GTNNAC | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 251 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 62 |
| HpyF3I | CTNAG | 1 cut(s) | 198 |
| Hsp92I | GRCGYC | 1 cut(s) | 24 |
| HspAI | GCGC | 1 cut(s) | 54 |
| Kzo9I | GATC | 1 cut(s) | 162 |
| LpnPI | CCDG | 4 cut(s) | 64, 73, 192, 219 |
| LweI | GCATC | 1 cut(s) | 24 |
| MaeI | CTAG | 1 cut(s) | 20 |
| MalI | GATC | 1 cut(s) | 164 |
| MboI | GATC | 1 cut(s) | 162 |
| MboII | GAAGA | 1 cut(s) | 55 |
| MflI | RGATCY | 1 cut(s) | 162 |
| MhlI | GDGCHC | 1 cut(s) | 67 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluCI | AATT | 1 cut(s) | 261 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MnlI | CCTC | 4 cut(s) | 37, 94, 193, 239 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MvnI | CGCG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 62 |
| NdeII | GATC | 1 cut(s) | 162 |
| NlaIV | GGNNCC | 1 cut(s) | 204 |
| NmeAIII | GCCGAG | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 1 cut(s) | 204 |
| PsuI | RGATCY | 1 cut(s) | 162 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| SatI | GCNGC | 1 cut(s) | 57 |
| Sau3AI | GATC | 1 cut(s) | 162 |
| SduI | GDGCHC | 1 cut(s) | 67 |
| SetI | ASST | 8 cut(s) | 91, 101, 146, 184, 199, 204, 231, 250 |
| SfaNI | GCATC | 1 cut(s) | 24 |
| Sse9I | AATT | 1 cut(s) | 261 |
| SsiI | CCGC | 3 cut(s) | 30, 57, 68 |
| SspMI | CTAG | 1 cut(s) | 20 |
| TasI | AATT | 1 cut(s) | 261 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TscAI | CASTG | 1 cut(s) | 67 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspRI | CASTG | 1 cut(s) | 67 |
| VneI | GTGCAC | 1 cut(s) | 63 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XspI | CTAG | 1 cut(s) | 20 |