DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0342911 RchiOBHm_Chr4g0433091 |
| rosa_multiflora | Rmu_sc0000361.1_g000021 Rmu_sc0001291.1_g000003 |
| rosa_rugosa | Rorug01G0181500 Rorug01G0181600 |
| rosa_samantha | Rh4AG319100 Rh4DG322500 |
| rosa_wichuraiana | Rw5G048190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 4 |
| AccB1I | GGYRCC | 1 cut(s) | 172 |
| AccIII | TCCGGA | 1 cut(s) | 193 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 183 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AluBI | AGCT | 2 cut(s) | 167, 199 |
| AluI | AGCT | 2 cut(s) | 167, 199 |
| Aor13HI | TCCGGA | 1 cut(s) | 193 |
| AoxI | GGCC | 1 cut(s) | 138 |
| BaeGI | GKGCMC | 1 cut(s) | 177 |
| BalI | TGGCCA | 1 cut(s) | 140 |
| BanI | GGYRCC | 1 cut(s) | 172 |
| BbvCI | CCTCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 1 cut(s) | 65 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 11, 45 |
| BfuAI | ACCTGC | 1 cut(s) | 4 |
| BglII | AGATCT | 1 cut(s) | 132 |
| BmiI | GGNNCC | 1 cut(s) | 174 |
| BmsI | GCATC | 1 cut(s) | 19 |
| Bpu10I | CCTNAGC | 1 cut(s) | 168 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 183 |
| BseAI | TCCGGA | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 159 |
| BseSI | GKGCMC | 1 cut(s) | 177 |
| BshFI | GGCC | 1 cut(s) | 140 |
| BshNI | GGYRCC | 1 cut(s) | 172 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| BsnI | GGCC | 1 cut(s) | 140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 177 |
| Bsp13I | TCCGGA | 1 cut(s) | 193 |
| Bsp143I | GATC | 2 cut(s) | 94, 132 |
| BspANI | GGCC | 1 cut(s) | 140 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BspEI | TCCGGA | 1 cut(s) | 193 |
| BspLI | GGNNCC | 1 cut(s) | 174 |
| BspMI | ACCTGC | 1 cut(s) | 4 |
| BspT107I | GGYRCC | 1 cut(s) | 172 |
| BssMI | GATC | 2 cut(s) | 94, 132 |
| Bst4CI | ACNGT | 1 cut(s) | 232 |
| BstDEI | CTNAG | 1 cut(s) | 168 |
| BstKTI | GATC | 2 cut(s) | 97, 135 |
| BstMBI | GATC | 2 cut(s) | 94, 132 |
| BstSLI | GKGCMC | 1 cut(s) | 177 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BsuRI | GGCC | 1 cut(s) | 140 |
| BveI | ACCTGC | 1 cut(s) | 4 |
| CviJI | RGCY | 3 cut(s) | 140, 167, 199 |
| CviKI_1 | RGCY | 3 cut(s) | 140, 167, 199 |
| DdeI | CTNAG | 1 cut(s) | 168 |
| DpnI | GATC | 2 cut(s) | 96, 134 |
| DpnII | GATC | 2 cut(s) | 94, 132 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| FaiI | YATR | 3 cut(s) | 159, 182, 205 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| HaeIII | GGCC | 1 cut(s) | 140 |
| HapII | CCGG | 1 cut(s) | 194 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HpaII | CCGG | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 19 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 1 cut(s) | 194 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 232 |
| HpyCH4V | TGCA | 2 cut(s) | 32, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 168 |
| Kpn2I | TCCGGA | 1 cut(s) | 193 |
| Kzo9I | GATC | 2 cut(s) | 94, 132 |
| LmnI | GCTCC | 1 cut(s) | 196 |
| LpnPI | CCDG | 2 cut(s) | 108, 207 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeIII | GTNAC | 1 cut(s) | 76 |
| MalI | GATC | 2 cut(s) | 96, 134 |
| MboI | GATC | 2 cut(s) | 94, 132 |
| MboII | GAAGA | 1 cut(s) | 51 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MhlI | GDGCHC | 1 cut(s) | 177 |
| MlsI | TGGCCA | 1 cut(s) | 140 |
| MluCI | AATT | 3 cut(s) | 60, 102, 109 |
| MluNI | TGGCCA | 1 cut(s) | 140 |
| MnlI | CCTC | 2 cut(s) | 163, 209 |
| Mox20I | TGGCCA | 1 cut(s) | 140 |
| MroI | TCCGGA | 1 cut(s) | 193 |
| MscI | TGGCCA | 1 cut(s) | 140 |
| Msp20I | TGGCCA | 1 cut(s) | 140 |
| MspA1I | CMGCKG | 1 cut(s) | 167 |
| MspI | CCGG | 1 cut(s) | 194 |
| NdeII | GATC | 2 cut(s) | 94, 132 |
| NlaIV | GGNNCC | 1 cut(s) | 174 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 1 cut(s) | 174 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| PvuII | CAGCTG | 1 cut(s) | 167 |
| Sau3AI | GATC | 2 cut(s) | 94, 132 |
| SduI | GDGCHC | 1 cut(s) | 177 |
| SetI | ASST | 6 cut(s) | 18, 154, 169, 174, 201, 220 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| Sse9I | AATT | 3 cut(s) | 60, 102, 109 |
| TaaI | ACNGT | 1 cut(s) | 232 |
| TaqI | TCGA | 1 cut(s) | 97 |
| TasI | AATT | 3 cut(s) | 60, 102, 109 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |