DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0342911 RchiOBHm_Chr4g0433091 |
| rosa_multiflora | Rmu_sc0000361.1_g000021 Rmu_sc0001291.1_g000003 |
| rosa_rugosa | Rorug01G0181500 Rorug01G0181600 |
| rosa_samantha | Rh4AG319100 Rh4DG322500 |
| rosa_wichuraiana | Rw5G048190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 100 |
| AccB1I | GGYRCC | 1 cut(s) | 268 |
| AccIII | TCCGGA | 1 cut(s) | 289 |
| AcoI | YGGCCR | 1 cut(s) | 234 |
| AfaI | GTAC | 2 cut(s) | 43, 64 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 279 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AluBI | AGCT | 3 cut(s) | 51, 263, 295 |
| AluI | AGCT | 3 cut(s) | 51, 263, 295 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| Aor13HI | TCCGGA | 1 cut(s) | 289 |
| AoxI | GGCC | 1 cut(s) | 234 |
| ApeKI | GCWGC | 1 cut(s) | 51 |
| BaeGI | GKGCMC | 1 cut(s) | 273 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 54, 87 |
| BalI | TGGCCA | 1 cut(s) | 236 |
| BanI | GGYRCC | 1 cut(s) | 268 |
| BbvCI | CCTCAGC | 1 cut(s) | 264 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BccI | CCATC | 1 cut(s) | 161 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 107, 141 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfuAI | ACCTGC | 1 cut(s) | 100 |
| BglII | AGATCT | 1 cut(s) | 228 |
| BisI | GCNGC | 1 cut(s) | 52 |
| BlsI | GCNGC | 1 cut(s) | 53 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BmsI | GCATC | 1 cut(s) | 115 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 51 |
| BsaWI | WCCGGW | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 279 |
| BseAI | TCCGGA | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseSI | GKGCMC | 1 cut(s) | 273 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BshFI | GGCC | 1 cut(s) | 236 |
| BshNI | GGYRCC | 1 cut(s) | 268 |
| BsiSI | CCGG | 1 cut(s) | 290 |
| BslFI | GGGAC | 1 cut(s) | 236 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 1 cut(s) | 236 |
| BsnI | GGCC | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 273 |
| Bsp13I | TCCGGA | 1 cut(s) | 289 |
| Bsp143I | GATC | 2 cut(s) | 190, 228 |
| BspANI | GGCC | 1 cut(s) | 236 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspEI | TCCGGA | 1 cut(s) | 289 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BspMI | ACCTGC | 1 cut(s) | 100 |
| BspT107I | GGYRCC | 1 cut(s) | 268 |
| BssMI | GATC | 2 cut(s) | 190, 228 |
| Bst4CI | ACNGT | 1 cut(s) | 328 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstKTI | GATC | 2 cut(s) | 193, 231 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 2 cut(s) | 190, 228 |
| BstSLI | GKGCMC | 1 cut(s) | 273 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BstX2I | RGATCY | 1 cut(s) | 228 |
| BstYI | RGATCY | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 236 |
| BveI | ACCTGC | 1 cut(s) | 100 |
| Csp6I | GTAC | 2 cut(s) | 42, 63 |
| CviAII | CATG | 1 cut(s) | 97 |
| CviJI | RGCY | 4 cut(s) | 51, 236, 263, 295 |
| CviKI_1 | RGCY | 4 cut(s) | 51, 236, 263, 295 |
| CviQI | GTAC | 2 cut(s) | 42, 63 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DpnI | GATC | 2 cut(s) | 192, 230 |
| DpnII | GATC | 2 cut(s) | 190, 228 |
| EaeI | YGGCCR | 1 cut(s) | 234 |
| FaeI | CATG | 1 cut(s) | 100 |
| FaiI | YATR | 5 cut(s) | 48, 98, 255, 278, 301 |
| FaqI | GGGAC | 1 cut(s) | 236 |
| FatI | CATG | 1 cut(s) | 96 |
| Fnu4HI | GCNGC | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 1 cut(s) | 52 |
| GluI | GCNGC | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 236 |
| HapII | CCGG | 1 cut(s) | 290 |
| Hin1II | CATG | 1 cut(s) | 100 |
| HincII | GTYRAC | 1 cut(s) | 102 |
| HindII | GTYRAC | 1 cut(s) | 102 |
| HpaII | CCGG | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 102, 115 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 1 cut(s) | 290 |
| Hpy8I | GTNNAC | 2 cut(s) | 102, 115 |
| HpyAV | CCTTC | 1 cut(s) | 4 |
| HpyCH4III | ACNGT | 1 cut(s) | 328 |
| HpyCH4IV | ACGT | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 3 cut(s) | 54, 128, 317 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| HpySE526I | ACGT | 1 cut(s) | 26 |
| Hsp92II | CATG | 1 cut(s) | 100 |
| Kpn2I | TCCGGA | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 190, 228 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| LpnPI | CCDG | 3 cut(s) | 95, 204, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeII | ACGT | 1 cut(s) | 26 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 2 cut(s) | 192, 230 |
| MboI | GATC | 2 cut(s) | 190, 228 |
| MboII | GAAGA | 2 cut(s) | 94, 147 |
| MflI | RGATCY | 1 cut(s) | 228 |
| MhlI | GDGCHC | 1 cut(s) | 273 |
| MlsI | TGGCCA | 1 cut(s) | 236 |
| MluCI | AATT | 3 cut(s) | 156, 198, 205 |
| MluNI | TGGCCA | 1 cut(s) | 236 |
| MnlI | CCTC | 2 cut(s) | 259, 305 |
| Mox20I | TGGCCA | 1 cut(s) | 236 |
| MroI | TCCGGA | 1 cut(s) | 289 |
| MscI | TGGCCA | 1 cut(s) | 236 |
| Msp20I | TGGCCA | 1 cut(s) | 236 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| MspI | CCGG | 1 cut(s) | 290 |
| NdeII | GATC | 2 cut(s) | 190, 228 |
| NlaIII | CATG | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| PkrI | GCNGC | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PsuI | RGATCY | 1 cut(s) | 228 |
| PvuII | CAGCTG | 1 cut(s) | 263 |
| RsaI | GTAC | 2 cut(s) | 43, 64 |
| RsaNI | GTAC | 2 cut(s) | 42, 63 |
| SatI | GCNGC | 1 cut(s) | 52 |
| Sau3AI | GATC | 2 cut(s) | 190, 228 |
| SduI | GDGCHC | 1 cut(s) | 273 |
| SetI | ASST | 8 cut(s) | 29, 53, 114, 250, 265, 270, 297, 316 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SmlI | CTYRAG | 1 cut(s) | 66 |
| SmoI | CTYRAG | 1 cut(s) | 66 |
| Sse9I | AATT | 3 cut(s) | 156, 198, 205 |
| TaaI | ACNGT | 1 cut(s) | 328 |
| TaiI | ACGT | 1 cut(s) | 29 |
| TaqI | TCGA | 1 cut(s) | 193 |
| TasI | AATT | 3 cut(s) | 156, 198, 205 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 51 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |