RchiOBHm_Chr1g0350051

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015006
Physical Location & Seq
Forward (+)
43172284 .. 43173046
763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGAAGCTCATTTGGTCCCCAGAAACAGCTTCTAAAGCTTACCTAGACACTGTCAAATCATGTGAGAAATTTAGAGAATCTGGTGTTGCCGAGCTGCTCTCTGCGATGGCGGCCGGCTGGAACGCGAAGCTGATCGTCGAGGCGTGGTCCTACGGTGATCCGATCGCCACCAGCCTAGGCCTGGCCACGGCCGCCCGCCACACGTGCGGACGGCACGTGTGCATAGTCCCGGATGAACGTTCGAGGATGGAGTACTTAAAGGCCATGCGTAACGCACCAATACAGCCCGAGGTGGTGGTCGGGGAGGCCGAGGCGGCGACGACAGGAGTTGATTTCTTGGTGGTTGACTGCAGCCGTAGGGAGTTCGCTAGGGTTTTAAGGAGAGCCAAGGTGAGCCCTAGAGGGGCGGTTTTCGCATGCAAGAATGCTTGGCAGAGAAACGTTTCGGGGTTCAGATGGCATGGTGTGGTGGAGAGGGGGACGCGTGTGGTGAGGTCGGTGTTTTTGCCGGTGGGAAAAGGGTTGGATATTGCCCATATAGGGTACGGCGGCGGAACGGGGTCGATAGGTACAATTAGGAAGGGTCCTGGCCGTTGGATCAAGCATATTGACCACCGGTCCGGCGAGGAGCACTTGTTCCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

215

Amino Acids

23.66

Weight (kDa)

9.67

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 214 3.4e-95 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 484
AciI CCGC 8 cut(s) 110, 192, 196, 207, 314, 407, 549, 552
AclI AACGTT 2 cut(s) 238, 441
AclWI GGATC 2 cut(s) 152, 605
AcoI YGGCCR 4 cut(s) 111, 183, 189, 589
AcsI RAATTY 1 cut(s) 68
AcvI CACGTG 2 cut(s) 204, 217
AfaI GTAC 3 cut(s) 254, 545, 571
AfiI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 540
AflIII ACRYGT 3 cut(s) 201, 216, 482
AgeI ACCGGT 1 cut(s) 615
AhdI GACNNNNNGTC 1 cut(s) 616
AjnI CCWGG 2 cut(s) 180, 586
AloI GAACNNNNNNTCC 1 cut(s) 620
AluBI AGCT 5 cut(s) 7, 29, 38, 94, 130
AluI AGCT 5 cut(s) 7, 29, 38, 94, 130
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 2 cut(s) 152, 605
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 7 cut(s) 111, 178, 183, 189, 261, 306, 589
ApeKI GCWGC 2 cut(s) 94, 351
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 175
AspS9I GGNCC 4 cut(s) 15, 147, 584, 618
AsuC2I CCSGG 2 cut(s) 230, 641
AsuHPI GGTGA 3 cut(s) 167, 403, 502
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 4 cut(s) 15, 147, 584, 618
AvrII CCTAGG 1 cut(s) 175
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 398
BbrPI CACGTG 2 cut(s) 204, 217
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 81, 363
BccI CCATC 3 cut(s) 100, 241, 450
BceAI ACGGC 5 cut(s) 204, 227, 339, 562, 576
BciT130I CCWGG 2 cut(s) 182, 588
BcnI CCSGG 2 cut(s) 230, 641
BfaI CTAG 4 cut(s) 44, 176, 369, 399
BfmI CTRYAG 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 6 cut(s) 96, 112, 193, 316, 353, 551
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 4 cut(s) 182, 230, 588, 641
Bme18I GGWCC 4 cut(s) 15, 147, 584, 618
BmeRI GACNNNNNGTC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 15, 147, 584, 618
BmiI GGNNCC 2 cut(s) 17, 585
BmrFI CCNGG 4 cut(s) 182, 230, 588, 641
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuMI CCSGG 2 cut(s) 230, 641
BsaAI YACGTR 2 cut(s) 204, 217
BsaJI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 1 cut(s) 620
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 187, 403, 540
Bse118I RCCGGY 3 cut(s) 113, 508, 615
BseBI CCWGG 2 cut(s) 182, 588
BseDI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BseGI GGATG 2 cut(s) 238, 252
BseLI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 540
BseRI GAGGAG 1 cut(s) 641
BseX3I CGGCCG 2 cut(s) 111, 189
BseXI GCAGC 2 cut(s) 81, 363
Bsh1236I CGCG 2 cut(s) 125, 484
Bsh1285I CGRYCG 3 cut(s) 114, 165, 192
BshFI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 591
BshTI ACCGGT 1 cut(s) 615
BsiEI CGRYCG 3 cut(s) 114, 165, 192
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 6 cut(s) 114, 230, 509, 616, 621, 640
BslFI GGGAC 2 cut(s) 212, 493
BslI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 540
BsmFI GGGAC 2 cut(s) 212, 493
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 591
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 398, 633
Bsp143I GATC 4 cut(s) 132, 157, 162, 597
BspACI CCGC 8 cut(s) 110, 192, 196, 207, 314, 407, 549, 552
BspANI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 591
BspFNI CGCG 2 cut(s) 125, 484
BspLI GGNNCC 2 cut(s) 17, 585
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 2 cut(s) 152, 605
BsrFI RCCGGY 3 cut(s) 113, 508, 615
BssAI RCCGGY 3 cut(s) 113, 508, 615
BssECI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BssMI GATC 4 cut(s) 132, 157, 162, 597
BssT1I CCWWGG 2 cut(s) 175, 387
Bst2UI CCWGG 2 cut(s) 182, 588
Bst4CI ACNGT 2 cut(s) 52, 155
BstBAI YACGTR 2 cut(s) 204, 217
BstC8I GCNNGC 3 cut(s) 115, 196, 418
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 238, 252
BstFNI CGCG 2 cut(s) 125, 484
BstKTI GATC 4 cut(s) 135, 160, 165, 600
BstMBI GATC 4 cut(s) 132, 157, 162, 597
BstMCI CGRYCG 3 cut(s) 114, 165, 192
BstMWI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
BstNI CCWGG 2 cut(s) 182, 588
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 4 cut(s) 180, 228, 586, 639
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 2 cut(s) 125, 484
BstV1I GCAGC 2 cut(s) 81, 363
BstZI CGGCCG 2 cut(s) 111, 189
BsuRI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 591
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 238, 252
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 115, 196, 418
Cfr10I RCCGGY 3 cut(s) 113, 508, 615
Cfr13I GGNCC 4 cut(s) 15, 147, 584, 618
CpoI CGGWCCG 1 cut(s) 618
CseI GACGC 1 cut(s) 490
Csp6I GTAC 3 cut(s) 253, 544, 570
CspAI ACCGGT 1 cut(s) 615
CspI CGGWCCG 1 cut(s) 618
CviAII CATG 4 cut(s) 60, 265, 417, 461
CviQI GTAC 3 cut(s) 253, 544, 570
DpnI GATC 4 cut(s) 134, 159, 164, 599
DpnII GATC 4 cut(s) 132, 157, 162, 597
DriI GACNNNNNGTC 1 cut(s) 616
EaeI YGGCCR 4 cut(s) 111, 183, 189, 589
EagI CGGCCG 2 cut(s) 111, 189
Eam1105I GACNNNNNGTC 1 cut(s) 616
EciI GGCGGA 1 cut(s) 567
EclXI CGGCCG 2 cut(s) 111, 189
Eco130I CCWWGG 2 cut(s) 175, 387
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 15, 147, 584, 618
Eco52I CGGCCG 2 cut(s) 111, 189
Eco72I CACGTG 2 cut(s) 204, 217
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 180, 586
EcoT14I CCWWGG 2 cut(s) 175, 387
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 175, 387
FaeI CATG 4 cut(s) 63, 268, 420, 464
FaiI YATR 8 cut(s) 61, 224, 266, 418, 462, 537, 539, 606
FaqI GGGAC 2 cut(s) 212, 493
FatI CATG 4 cut(s) 59, 264, 416, 460
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
FokI GGATG 2 cut(s) 245, 259
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
FspBI CTAG 4 cut(s) 44, 176, 369, 399
GluI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
HaeIII GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 591
HapII CCGG 6 cut(s) 114, 230, 509, 616, 621, 640
HgaI GACGC 1 cut(s) 490
Hin1II CATG 4 cut(s) 63, 268, 420, 464
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 77
HpaII CCGG 6 cut(s) 114, 230, 509, 616, 621, 640
HphI GGTGA 3 cut(s) 167, 403, 502
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 162, 455
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 140, 322
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 2 cut(s) 52, 155
HpyCH4IV ACGT 4 cut(s) 203, 216, 238, 441
HpyCH4V TGCA 3 cut(s) 222, 351, 420
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
HpySE526I ACGT 4 cut(s) 203, 216, 238, 441
Hsp92II CATG 4 cut(s) 63, 268, 420, 464
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 132, 157, 162, 597
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 2 cut(s) 81, 363
MaeI CTAG 4 cut(s) 44, 176, 369, 399
MaeII ACGT 4 cut(s) 203, 216, 238, 441
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 134, 159, 164, 599
MboI GATC 4 cut(s) 132, 157, 162, 597
MhlI GDGCHC 2 cut(s) 398, 633
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 68, 573
MluI ACGCGT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 504, 575
MnlI CCTC 9 cut(s) 133, 237, 283, 298, 304, 395, 468, 486, 619
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 257, 377
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 6 cut(s) 114, 230, 509, 616, 621, 640
MspR9I CCNGG 4 cut(s) 182, 230, 588, 641
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 182, 588
MvnI CGCG 2 cut(s) 125, 484
MwoI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 230, 641
NdeII GATC 4 cut(s) 132, 157, 162, 597
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 4 cut(s) 63, 268, 420, 464
NlaIV GGNNCC 2 cut(s) 17, 585
NmeAIII GCCGAG 2 cut(s) 115, 334
NspI RCATGY 1 cut(s) 420
PaeI GCATGC 1 cut(s) 420
PceI AGGCCT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 2 cut(s) 228, 639
PinAI ACCGGT 1 cut(s) 615
PkrI GCNGC 6 cut(s) 96, 112, 193, 316, 353, 551
Ple19I CGATCG 1 cut(s) 165
PmaCI CACGTG 2 cut(s) 204, 217
PmlI CACGTG 2 cut(s) 204, 217
Ppu21I YACGTR 2 cut(s) 204, 217
PpuMI RGGWCCY 1 cut(s) 584
Psp1406I AACGTT 2 cut(s) 238, 441
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 2 cut(s) 180, 586
PspCI CACGTG 2 cut(s) 204, 217
PspGI CCWGG 2 cut(s) 180, 586
PspN4I GGNNCC 2 cut(s) 17, 585
PspPI GGNCC 4 cut(s) 15, 147, 584, 618
PspPPI RGGWCCY 1 cut(s) 584
PstI CTGCAG 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 50
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 3 cut(s) 254, 545, 571
RsaNI GTAC 3 cut(s) 253, 544, 570
Rsr2I CGGWCCG 1 cut(s) 618
RsrII CGGWCCG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 257, 377
SatI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
Sau3AI GATC 4 cut(s) 132, 157, 162, 597
Sau96I GGNCC 4 cut(s) 15, 147, 584, 618
ScaI AGTACT 1 cut(s) 254
ScrFI CCNGG 4 cut(s) 182, 230, 588, 641
SduI GDGCHC 2 cut(s) 398, 633
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 4 cut(s) 15, 147, 584, 618
SphI GCATGC 1 cut(s) 420
Sse9I AATT 2 cut(s) 68, 573
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 8 cut(s) 110, 192, 196, 207, 314, 407, 549, 552
SspMI CTAG 4 cut(s) 44, 176, 369, 399
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 180, 228, 586, 639
StyI CCWWGG 2 cut(s) 175, 387
TaaI ACNGT 2 cut(s) 52, 155
TaiI ACGT 4 cut(s) 206, 219, 241, 444
TaqI TCGA 3 cut(s) 138, 242, 563
TasI AATT 2 cut(s) 68, 573
TatI WGTACW 1 cut(s) 252
TauI GCSGC 4 cut(s) 113, 194, 317, 552
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 257, 377
Tru9I TTAA 2 cut(s) 257, 377
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 94, 351
TspDTI ATGAA 2 cut(s) 17, 249
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 4 cut(s) 15, 147, 584, 618
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 4 cut(s) 44, 176, 369, 399
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.