Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Reverse (-)

43883250 .. 43886565

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCCACCTCTGTTTCCAATGCGGTTTGCTTTCGCTATCCCCACCCACCAAACCCAACACTCAACGAACCCAGAAAAACCCACCTCCCCCAATTCTCCGGCAACATTTTCCGGCCAAAACCCATGAATCTTTGCTCTTCCAGCCACCGTTTTCAGCCACCATTGATGGCTCTAAGTGTAGAAGAGACAGCAATGAATGGAAATACAGAAGGGAAGCCGAGGTTTAAGTGGGGTGTGATAGGTCCTGATATTACAGAAGCCCAGCAAGAAGCTATAGATGAACTCCCTCCCAAGATGAGCAAGCGTTGCCAGGCTTTGATGAAGCAGATTATTTGCTTCTCTCCTGAGAAAGGGAGTCTTTGTGAGGTGTTGGATGCTTGGGTTAGCATTATGAAGCCTTGCAGGGCTGACTGGCTTGCGGTTCTTAAAGAACTGAGGATTAAAGATCACCCACTTTATCTTCAGGTGGCAGAAATTGCTGTACTAGATGAATCTTTTGAAGCCAATGTGCGTGACTATACGAAAATAATCCATGGTTATGGGAAGCAAAACCGAATTGAGGACGCTGAAAACACCCTTTCAAACATGAAGTCTAGAGGCTTCGTCTGTGATCAGGTAACGCTAACTGCCATGATTGACATGTATAGCAAGGCTGGACATCTTAAGCTGGCTGAGGATACTTTTGAAGAAATTAAGCTCCTTGGACAGCAATTAGATAAAAGATCATATGGCTCAATGATCATGGCCTACATTAGAGCTGGAATGCCTGATCAGGGAGAGAATTTACTCATAGAAATGGATGCCCAAGAAATTTATGCTGGAAGTGAAGTTTACAAGGCATTGTTAAGAGCATACTCAATGATTGGTGATACTGAAGGAGCTCAAAGGGTATTCAATGCAGTTCAGCTAGCTGGTATTTCTCCAGATGCTAAGATATGTGGACTTCTCATAAATGCATATGGTACATCAGGTCAAAGTCAAAAGGCACGTGCTGCGTTTGAAAATATGAGGAAGGCTGGTCTTAAACCCAGTGATAAATGCATAGCTCTAATGTTGGCTGCATACGAAAAGGAGAATAAGCTTCAAATGGCATTGAAAATTTGCAGCAACAGAAGCCAATTCTGGAATTCCTGCTTCCTAGTTTCCATCTCAAGTTTTATGTTTCACATTGCGGACGTCAGCTTCAGTTGCGAAGAACACACAAGTGAAAACAAAGACGGTGCGTTATTCATAACAACTACTGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

416

Amino Acids

46.46

Weight (kDa)

6.48

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	173 - 213	3.5e-09	PPR repeat family
PPR_long	PF17177	182 - 292	7.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	204 - 250	9.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1179
AciI	CCGC	3 cut(s)	23, 419, 1172
AcoI	YGGCCR	2 cut(s)	3, 113
AcsI	RAATTY	4 cut(s)	781, 810, 1098, 1126
AcuI	CTGAAG	3 cut(s)	446, 894, 1168
AcvI	CACGTG	1 cut(s)	989
AcyI	GRCGYC	1 cut(s)	1176
AfaI	GTAC	2 cut(s)	483, 964
AfiI	CCNNNNNNNGG	3 cut(s)	350, 559, 773
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	7 cut(s)	500, 582, 686, 895, 1001, 1085, 1096
AjnI	CCWGG	1 cut(s)	309
AleI	CACNNNNGTG	1 cut(s)	1203
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	3 cut(s)	3, 113, 744
ApeKI	GCWGC	3 cut(s)	992, 1058, 1104
ApoI	RAATTY	4 cut(s)	781, 810, 1098, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	440, 878
AsuNHI	GCTAGC	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	883
BbrPI	CACGTG	1 cut(s)	989
Bbv12I	GWGCWC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	979, 1045, 1116
BccI	CCATC	2 cut(s)	160, 1154
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	3 cut(s)	610, 738, 769
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	4 cut(s)	485, 594, 908, 1139
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	3 cut(s)	993, 1059, 1105
BlsI	GCNGC	3 cut(s)	994, 1060, 1106
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	1023
BmsI	GCATC	3 cut(s)	364, 790, 916
BmtI	GCTAGC	1 cut(s)	911
BmuI	ACTGGG	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	1135
BsaAI	YACGTR	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	1176
BsaJI	CCNNGG	3 cut(s)	218, 532, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 559, 773
Bse1I	ACTGG	2 cut(s)	416, 1029
Bse3DI	GCAATG	2 cut(s)	198, 1167
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	218, 532, 700
BseGI	GGATG	2 cut(s)	379, 805
BseLI	CCNNNNNNNGG	3 cut(s)	350, 559, 773
BseMI	GCAATG	2 cut(s)	198, 1167
BseMII	CTCAG	3 cut(s)	336, 425, 663
BseNI	ACTGG	2 cut(s)	416, 1029
BseXI	GCAGC	3 cut(s)	979, 1045, 1116
BseYI	CCCAGC	1 cut(s)	261
BshFI	GGCC	3 cut(s)	5, 115, 746
BsiHKAI	GWGCWC	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	99, 112
BslI	CCNNNNNNNGG	3 cut(s)	350, 559, 773
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	3 cut(s)	5, 115, 746
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	5 cut(s)	445, 610, 722, 738, 769
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	3 cut(s)	23, 419, 1172
BspANI	GGCC	3 cut(s)	5, 115, 746
BspCNI	CTCAG	3 cut(s)	337, 426, 664
BspOI	GCTAGC	1 cut(s)	911
BspQI	GCTCTTC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	2 cut(s)	198, 1167
BsrI	ACTGG	2 cut(s)	416, 1029
BssECI	CCNNGG	3 cut(s)	218, 532, 700
BssMI	GATC	5 cut(s)	445, 610, 722, 738, 769
BssNI	GRCGYC	1 cut(s)	1176
BssT1I	CCWWGG	2 cut(s)	532, 700
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	149, 1220, 1243
Bst6I	CTCTTC	2 cut(s)	142, 177
BstACI	GRCGYC	1 cut(s)	1176
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	3 cut(s)	306, 476, 992
BstBAI	YACGTR	1 cut(s)	989
BstC8I	GCNNGC	4 cut(s)	302, 417, 669, 909
BstDEI	CTNAG	5 cut(s)	173, 345, 434, 672, 930
BstDSI	CCRYGG	1 cut(s)	532
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	379, 805
BstKTI	GATC	5 cut(s)	448, 613, 725, 741, 772
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	445, 610, 722, 738, 769
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 306, 476, 992, 1113, 1188
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	979, 1045, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	5, 115, 746
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	379, 805
BtsIMutI	CAGTG	1 cut(s)	1036
Cac8I	GCNNGC	4 cut(s)	302, 417, 669, 909
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	482, 963
CviAII	CATG	6 cut(s)	124, 533, 586, 631, 640, 742
CviQI	GTAC	2 cut(s)	482, 963
DdeI	CTNAG	5 cut(s)	173, 345, 434, 672, 930
DpnI	GATC	5 cut(s)	447, 612, 724, 740, 771
DpnII	GATC	5 cut(s)	445, 610, 722, 738, 769
EaeI	YGGCCR	2 cut(s)	3, 113
Eam1104I	CTCTTC	2 cut(s)	142, 177
EarI	CTCTTC	2 cut(s)	142, 177
Ecl136II	GAGCTC	1 cut(s)	881
Eco130I	CCWWGG	2 cut(s)	532, 700
Eco24I	GRGCYC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	881
Eco57I	CTGAAG	3 cut(s)	446, 894, 1168
Eco72I	CACGTG	1 cut(s)	989
EcoICRI	GAGCTC	1 cut(s)	881
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	532, 700
EcoT22I	ATGCAT	2 cut(s)	958, 1043
EcoT38I	GRGCYC	1 cut(s)	883
ErhI	CCWWGG	2 cut(s)	532, 700
FaeI	CATG	6 cut(s)	127, 536, 589, 634, 643, 745
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	6 cut(s)	123, 532, 585, 630, 639, 741
FauNDI	CATATG	2 cut(s)	727, 958
FbaI	TGATCA	3 cut(s)	610, 738, 769
Fnu4HI	GCNGC	3 cut(s)	993, 1059, 1105
FokI	GGATG	2 cut(s)	386, 812
FriOI	GRGCYC	1 cut(s)	883
Fsp4HI	GCNGC	3 cut(s)	993, 1059, 1105
FspBI	CTAG	4 cut(s)	485, 594, 908, 1139
GluI	GCNGC	3 cut(s)	993, 1059, 1105
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	5, 115, 746
HapII	CCGG	2 cut(s)	99, 112
HgaI	GACGC	1 cut(s)	572
Hin1I	GRCGYC	1 cut(s)	1176
Hin1II	CATG	6 cut(s)	127, 536, 589, 634, 643, 745
HindIII	AAGCTT	1 cut(s)	1079
HinfI	GANTC	3 cut(s)	127, 355, 491
HpaII	CCGG	2 cut(s)	99, 112
HphI	GGTGA	2 cut(s)	440, 878
Hpy166II	GTNNAC	2 cut(s)	832, 941
Hpy188III	TCNNGA	5 cut(s)	245, 344, 594, 923, 1123
Hpy8I	GTNNAC	2 cut(s)	832, 941
HpyAV	CCTTC	3 cut(s)	203, 869, 1006
HpyCH4III	ACNGT	3 cut(s)	149, 1220, 1243
HpyCH4IV	ACGT	2 cut(s)	988, 1176
HpyCH4V	TGCA	6 cut(s)	402, 899, 956, 1041, 1061, 1104
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 306, 476, 992, 1113, 1188
HpyF3I	CTNAG	5 cut(s)	173, 345, 434, 672, 930
HpySE526I	ACGT	2 cut(s)	988, 1176
Hsp92I	GRCGYC	1 cut(s)	1176
Hsp92II	CATG	6 cut(s)	127, 536, 589, 634, 643, 745
Ksp22I	TGATCA	3 cut(s)	610, 738, 769
Kzo9I	GATC	5 cut(s)	445, 610, 722, 738, 769
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	702, 878
Lsp1109I	GCAGC	3 cut(s)	979, 1045, 1116
LweI	GCATC	3 cut(s)	364, 790, 916
MaeI	CTAG	4 cut(s)	485, 594, 908, 1139
MaeII	ACGT	2 cut(s)	988, 1176
MaeIII	GTNAC	2 cut(s)	512, 616
MalI	GATC	5 cut(s)	447, 612, 724, 740, 771
MboI	GATC	5 cut(s)	445, 610, 722, 738, 769
MboII	GAAGA	5 cut(s)	129, 194, 452, 698, 1205
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	351
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	958, 1043
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	225, 426, 441, 663, 693, 845, 1023
MslI	CAYNNNNRTG	3 cut(s)	537, 794, 1203
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	99, 112
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	6 cut(s)	141, 306, 476, 992, 1113, 1188
NcoI	CCATGG	1 cut(s)	532
NdeI	CATATG	2 cut(s)	727, 958
NdeII	GATC	5 cut(s)	445, 610, 722, 738, 769
NheI	GCTAGC	1 cut(s)	907
NlaIII	CATG	6 cut(s)	127, 536, 589, 634, 643, 745
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	2 cut(s)	958, 1043
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	1203
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	768
PfeI	GAWTC	2 cut(s)	127, 491
PkrI	GCNGC	3 cut(s)	994, 1060, 1106
PleI	GAGTC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	989
PmlI	CACGTG	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	989
PpuMI	RGGWCCY	1 cut(s)	242
PscI	ACATGT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	883
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	989
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	483, 964
RsaNI	GTAC	2 cut(s)	482, 963
RseI	CAYNNNNRTG	3 cut(s)	537, 794, 1203
SacI	GAGCTC	1 cut(s)	883
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	7 cut(s)	225, 426, 441, 663, 693, 845, 1023
SatI	GCNGC	3 cut(s)	993, 1059, 1105
Sau3AI	GATC	5 cut(s)	445, 610, 722, 738, 769
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	3 cut(s)	364, 790, 916
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	3 cut(s)	537, 794, 1203
SmlI	CTYRAG	2 cut(s)	662, 1150
SmoI	CTYRAG	2 cut(s)	662, 1150
SsiI	CCGC	3 cut(s)	23, 419, 1172
SspMI	CTAG	4 cut(s)	485, 594, 908, 1139
SstI	GAGCTC	1 cut(s)	883
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	532, 700
TaaI	ACNGT	3 cut(s)	149, 1220, 1243
TaiI	ACGT	2 cut(s)	991, 1179
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	127, 491
Tru1I	TTAA	7 cut(s)	225, 426, 441, 663, 693, 845, 1023
Tru9I	TTAA	7 cut(s)	225, 426, 441, 663, 693, 845, 1023
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	992, 1058, 1104
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	8 cut(s)	140, 209, 294, 335, 407, 504, 602, 1219
TspRI	CASTG	1 cut(s)	1036
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	4 cut(s)	781, 810, 1098, 1126
XbaI	TCTAGA	1 cut(s)	593
XceI	RCATGY	1 cut(s)	643
XspI	CTAG	4 cut(s)	485, 594, 908, 1139
ZraI	GACGTC	1 cut(s)	1177
Zsp2I	ATGCAT	2 cut(s)	958, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.