RchiOBHm_Chr1g0354461

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018475
Physical Location & Seq
Forward (+)
47435639 .. 47436199
561 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGAATAGCTTCCTTTCAAGAGAGTCTATTCTTGTCATTTTGCTTTTAGCGATTTGCTTTGTTAGTGAAGCTCAAAAATGTCGTCCAAGTGGAATGATAAGAGGAAAGAAGTCTCCTTCTGGACAATGTAACCAGGAGCAAGACCCTGACTGTTGTAGACCGGGTAAAATGTACCCGACCTACACATGCTCGCCCGCAGTGTCTGGGAACACCCACGCCTACCTCACTCTCAACAGTTTCGAGGCAGGTGGTGATGGCAGTCTTCCATCAGAATGCGATAACAAATACCACAATGACAGCACTCCAATCGTGGCACTCTCCACTGGATGGTACAAGAATGGAGGAAGGTGCCATAACAACATTAAAATTACTGCTAATGATCGCAGTGTGGTGGCCATGGTGGTAGATGAATGTGACTCTACTAGGGGATGTGATGCAGATCATGACTACCTGCCTCCTTGCGCTAACAACATTATTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTCTAAAGAAAACTGGGGCGGATTAGATGTCACCTGGAATGACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.21

Weight (kDa)

5.46

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 14 - 186 2.4e-56 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 2 cut(s) 236, 459
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AccI GTMKAC 1 cut(s) 157
AciI CCGC 2 cut(s) 195, 531
AcoI YGGCCR 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 132, 545
AluBI AGCT 2 cut(s) 9, 71
AluI AGCT 2 cut(s) 9, 71
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 263, 535
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 254
BccI CCATC 3 cut(s) 248, 274, 321
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 134, 547
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 2 cut(s) 236, 459
BglI GCCNNNNNGGC 1 cut(s) 488
Bme1390I CCNGG 3 cut(s) 134, 162, 547
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 3 cut(s) 134, 162, 547
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 396, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 328, 530
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 134, 547
BseDI CCNNGG 2 cut(s) 396, 486
BseGI GGATG 2 cut(s) 332, 434
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 328, 530
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 2 cut(s) 379, 439
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 195, 531
BspANI GGCC 1 cut(s) 395
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 2 cut(s) 236, 459
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 328, 530
BssECI CCNNGG 2 cut(s) 396, 486
BssMI GATC 2 cut(s) 379, 439
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 396, 486
Bst2UI CCWGG 2 cut(s) 134, 547
Bst4CI ACNGT 2 cut(s) 152, 236
BstACI GRCGYC 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 191, 195, 506
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 332, 434
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 2 cut(s) 382, 442
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 379, 439
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 134, 547
BstNSI RCATGY 2 cut(s) 189, 512
BstSCI CCNGG 3 cut(s) 132, 160, 545
BstV2I GAAGAC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 332, 434
BtsI GCAGTG 2 cut(s) 204, 391
BtsIMutI CAGTG 3 cut(s) 204, 321, 391
BveI ACCTGC 2 cut(s) 236, 459
Cac8I GCNNGC 3 cut(s) 191, 195, 506
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 4 cut(s) 186, 397, 443, 509
CviJI RGCY 5 cut(s) 9, 71, 395, 491, 504
CviKI_1 RGCY 5 cut(s) 9, 71, 395, 491, 504
CviQI GTAC 2 cut(s) 172, 331
DpnI GATC 2 cut(s) 381, 441
DpnII GATC 2 cut(s) 379, 439
EaeI YGGCCR 1 cut(s) 393
EciI GGCGGA 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 396, 486
EcoRII CCWGG 2 cut(s) 132, 545
EcoT14I CCWWGG 2 cut(s) 396, 486
ErhI CCWWGG 2 cut(s) 396, 486
FaeI CATG 4 cut(s) 189, 400, 446, 512
FaiI YATR 5 cut(s) 187, 354, 398, 444, 510
FatI CATG 4 cut(s) 185, 396, 442, 508
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 157
FokI GGATG 2 cut(s) 339, 441
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 463
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 4 cut(s) 189, 400, 446, 512
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 2 cut(s) 23, 416
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 263, 535
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 18, 120, 443
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 126, 339, 494
HpyCH4III ACNGT 2 cut(s) 152, 236
HpyCH4V TGCA 2 cut(s) 437, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 4 cut(s) 189, 400, 446, 512
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 2 cut(s) 379, 439
LmnI GCTCC 1 cut(s) 136
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 128, 413, 541
MalI GATC 2 cut(s) 381, 441
MboI GATC 2 cut(s) 379, 439
MboII GAAGA 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 32, 410
MnlI CCTC 6 cut(s) 95, 233, 235, 335, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 134, 162, 547
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 2 cut(s) 134, 547
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 379, 439
NlaIII CATG 4 cut(s) 189, 400, 446, 512
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 413, 541
NspI RCATGY 2 cut(s) 189, 512
PagI TCATGA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 327
PleI GAGTC 2 cut(s) 31, 410
PpsI GAGTC 2 cut(s) 31, 410
Psp6I CCWGG 2 cut(s) 132, 545
PspGI CCWGG 2 cut(s) 132, 545
PspN4I GGNNCC 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 2 cut(s) 379, 439
SchI GAGTC 2 cut(s) 32, 410
ScrFI CCNGG 3 cut(s) 134, 162, 547
SetI ASST 8 cut(s) 11, 73, 182, 225, 250, 350, 453, 548
SfaNI GCATC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 271
Sse9I AATT 1 cut(s) 366
SsiI CCGC 2 cut(s) 195, 531
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 132, 160, 545
StyI CCWWGG 2 cut(s) 396, 486
TaaI ACNGT 2 cut(s) 152, 236
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 366
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 3 cut(s) 204, 328, 391
TseFI GTSAC 2 cut(s) 413, 541
Tsp45I GTSAC 2 cut(s) 413, 541
TspDTI ATGAA 2 cut(s) 17, 423
TspRI CASTG 3 cut(s) 204, 328, 391
Van91I CCANNNNNTGG 1 cut(s) 327
XceI RCATGY 2 cut(s) 189, 512
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.