RchiOBHm_Chr1g0355131

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
47868547 .. 47872185
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGTCAATCTTCTGTGGGATTCCCATCCTCGAGTCTGTATACTGTCTGGCGTGTGCTCGTTGGGTGTGGTTGAAATGCCTTTACACGGCAGGCCATGAGAGTGAGAACTGGGGTCTAGCCACCGCTGAAGAGTTTGAGCCCATCCCTCGCTATTGCAAACTAATTTTATCTGTCTATGAGGATGATCTCCGTAACCCAATGTGGGCACCTCCCGGAGGGTATGGTATCGATCCTGATTGGGTAATCTTACGTAAAGGCTATGAAGAAACACATGGCCGAGTTCCTCCTTACATTGTCTATCTTGATCATGATCATTCTGATATAGTCTTGGTAGTTAGGGGACTCAATATGGCCAAGGAAAGTGATTATTTAGTTATGCTTGATAACAACCTTGGGCAGACAAAATTTGATGGTGGGTATGTCCACAATGGGTTATTGAAGGCAGCAGAGTGGCTGTTTGATACAGAGTATGAGTTTTTGAGGGAATTGGTATTAAAAAATCCAAAGTATACCCTGACATTTATTGGACATTCCCTGGGCTCTGGTGTTGTGGCATTGCTGACTCTGGTAGCGCTTCAGAACAGAAGCAAATTGGGAATTGTTGAGAGGAAAAAGATTAGATGCTATGCCACCGCTCCAGCTAGATGTATGTCATTGAATCTGGCCGTGAGATATGCAGATGTTATCAATTCTATTGTACTCCAGGACGATTTCTTACCTCGGACAACAACTTCTTTAGCGGATTTATTCAAATCACTTTTCTGTTTGCCATGTTTACTGTGCATAATGTGCTTGAAGGATACATGCACACTGGAAGAGAGGATGTTCACAGATCCAAGGAGACTCTATGCACCTGGTCGGCTCTATCACATTGTTGAGCGTAAGCCCTTCAGATTAGGAAGGTTTCCCCCAGTTGTGAGAACAGCAGTGCCTGTGGATGGGAGGTTTGAGCAAGTAGTTCTTTCTTGCCATGCTACTACTGACCACGCGATAATCTGGATTGAGAGAGAATCACAAAAGGCTTTTGATATAATGATGGACAGAGATCGAATAATGGATGTGCCGGCTAAGCAGAGGATGGAGAGAAAAGAATCCCTTGTTCGTGGACACAGCCAGGAGCATGAGGCAGCACTTCGGAAAGCTATAGCTTTGGATATCCCTCATGCCTTCCCTACTTCACCATATGGAACATTTACATTGAGTGAAACGGAAGAGGCAGAGAACTCTGGAAAATCCACCGGGGGGAGTCCCTCTGAGCCACTAAAGAAGAGGAGTGAAAGCTGGGATGATTTCGTAGAGCGGCTATTTGATGTGGATGAGTCTGGTAACATGATGATCAAGAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

51.16

Weight (kDa)

6.0

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 10 - 75 4.5e-22 Lipase 3 N-terminal region
Lipase_3 PF01764 109 - 244 6.4e-23 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 2 cut(s) 635, 1300
AccI GTMKAC 2 cut(s) 39, 509
AccII CGCG 1 cut(s) 989
AciI CCGC 4 cut(s) 123, 633, 740, 1300
AclWI GGATC 2 cut(s) 224, 827
AcoI YGGCCR 3 cut(s) 274, 351, 663
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 3 cut(s) 147, 560, 874
AfaI GTAC 1 cut(s) 699
AfeI AGCGCT 1 cut(s) 573
AfiI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
AgsI TTSAA 5 cut(s) 73, 439, 658, 751, 796
AjnI CCWGG 4 cut(s) 534, 702, 853, 1113
AluBI AGCT 4 cut(s) 641, 1142, 1148, 1281
AluI AGCT 4 cut(s) 641, 1142, 1148, 1281
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 2 cut(s) 224, 827
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 29
Aor51HI AGCGCT 1 cut(s) 573
AoxI GGCC 4 cut(s) 91, 274, 351, 663
ApeKI GCWGC 2 cut(s) 443, 1127
ApoI RAATTY 1 cut(s) 404
AspLEI GCGC 1 cut(s) 574
AsuC2I CCSGG 2 cut(s) 213, 1240
AsuHPI GGTGA 1 cut(s) 1170
AvaI CYCGRG 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 141, 542
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 455, 1139
BccI CCATC 6 cut(s) 32, 149, 404, 932, 1030, 1072
BceAI ACGGC 2 cut(s) 102, 650
BciT130I CCWGG 4 cut(s) 536, 704, 855, 1115
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 3 cut(s) 304, 310, 1335
BcnI CCSGG 2 cut(s) 213, 1240
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 2 cut(s) 116, 642
BfmI CTRYAG 1 cut(s) 1143
BfoI RGCGCY 1 cut(s) 575
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 3 cut(s) 444, 1128, 1301
BlpI GCTNAGC 1 cut(s) 1068
BlsI GCNGC 3 cut(s) 445, 1129, 1302
Bme1390I CCNGG 6 cut(s) 213, 536, 704, 855, 1115, 1240
BmeT110I CYCGRG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 6 cut(s) 213, 536, 704, 855, 1115, 1240
BmrI ACTGGG 2 cut(s) 118, 905
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 2 cut(s) 118, 905
BpmI CTGGAG 2 cut(s) 621, 686
Bpu1102I GCTNAGC 1 cut(s) 1068
BpuMI CCSGG 2 cut(s) 213, 1240
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 251
BsaBI GATNNNNATC 2 cut(s) 23, 309
BsaJI CCNNGG 7 cut(s) 354, 391, 534, 535, 719, 836, 1239
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 3 cut(s) 113, 816, 911
Bse3DI GCAATG 1 cut(s) 554
Bse8I GATNNNNATC 2 cut(s) 23, 309
BseBI CCWGG 4 cut(s) 536, 704, 855, 1115
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 7 cut(s) 354, 391, 534, 535, 719, 836, 1239
BseGI GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BseJI GATNNNNATC 2 cut(s) 23, 309
BseLI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 1245
BseNI ACTGG 3 cut(s) 113, 816, 911
BseRI GAGGAG 1 cut(s) 1285
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 455, 1139
BseYI CCCAGC 1 cut(s) 1281
Bsh1236I CGCG 1 cut(s) 989
BshFI GGCC 4 cut(s) 93, 276, 353, 665
BshNI GGYRCC 1 cut(s) 205
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 213, 1064, 1239
BslFI GGGAC 2 cut(s) 354, 1233
BslI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 354, 1233
BsnI GGCC 4 cut(s) 93, 276, 353, 665
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 4 cut(s) 58, 141, 208, 542
Bsp143I GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
Bsp1720I GCTNAGC 1 cut(s) 1068
BspACI CCGC 4 cut(s) 123, 633, 740, 1300
BspANI GGCC 4 cut(s) 93, 276, 353, 665
BspCNI CTCAG 1 cut(s) 1246
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 989
BspHI TCATGA 2 cut(s) 307, 1346
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 224, 827
BspT107I GGYRCC 1 cut(s) 205
BsrBI CCGCTC 2 cut(s) 635, 1300
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 1063
BsrI ACTGG 3 cut(s) 113, 816, 911
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 7 cut(s) 354, 391, 534, 535, 719, 836, 1239
BssMI GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
BssNAI GTATAC 2 cut(s) 40, 510
BssT1I CCWWGG 3 cut(s) 354, 391, 836
Bst1107I GTATAC 2 cut(s) 40, 510
Bst2UI CCWGG 4 cut(s) 536, 704, 855, 1115
Bst4CI ACNGT 2 cut(s) 44, 780
Bst6I CTCTTC 4 cut(s) 123, 810, 1206, 1262
BstAPI GCANNNNNTGC 1 cut(s) 789
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 91, 1065
BstDEI CTNAG 2 cut(s) 1068, 1254
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BstFNI CGCG 1 cut(s) 989
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 7 cut(s) 187, 232, 307, 313, 835, 1048, 1338
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
BstMWI GCNNNNNNNGC 2 cut(s) 789, 1069
BstNI CCWGG 4 cut(s) 536, 704, 855, 1115
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 6 cut(s) 211, 534, 702, 853, 1113, 1238
BstSFI CTRYAG 1 cut(s) 1143
BstSLI GKGCMC 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 251
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 2 cut(s) 455, 1139
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BstZ17I GTATAC 2 cut(s) 40, 510
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 4 cut(s) 93, 276, 353, 665
BsuTUI ATCGAT 1 cut(s) 228
BtsCI GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 809, 933
Cac8I GCNNGC 2 cut(s) 91, 1065
CaiI CAGNNNCTG 1 cut(s) 932
CciI TCATGA 2 cut(s) 307, 1346
CfoI GCGC 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 1063
ClaI ATCGAT 1 cut(s) 228
CsiI ACCWGGT 1 cut(s) 853
Csp6I GTAC 1 cut(s) 698
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 2 cut(s) 1068, 1254
DpnI GATC 7 cut(s) 186, 231, 306, 312, 834, 1047, 1337
DpnII GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
EaeI YGGCCR 3 cut(s) 274, 351, 663
Eam1104I CTCTTC 4 cut(s) 123, 810, 1206, 1262
EarI CTCTTC 4 cut(s) 123, 810, 1206, 1262
Eco105I TACGTA 1 cut(s) 251
Eco130I CCWWGG 3 cut(s) 354, 391, 836
Eco24I GRGCYC 2 cut(s) 141, 542
Eco32I GATATC 1 cut(s) 1156
Eco47III AGCGCT 1 cut(s) 573
Eco57I CTGAAG 3 cut(s) 147, 560, 874
Eco88I CYCGRG 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 4 cut(s) 534, 702, 853, 1113
EcoRV GATATC 1 cut(s) 1156
EcoT14I CCWWGG 3 cut(s) 354, 391, 836
EcoT38I GRGCYC 2 cut(s) 141, 542
ErhI CCWWGG 3 cut(s) 354, 391, 836
FalI AAGNNNNNCTT 4 cut(s) 945, 977, 1080, 1112
FaqI GGGAC 2 cut(s) 354, 1233
FauNDI CATATG 1 cut(s) 1183
FbaI TGATCA 3 cut(s) 304, 310, 1335
FblI GTMKAC 2 cut(s) 39, 509
Fnu4HI GCNGC 3 cut(s) 444, 1128, 1301
FokI GGATG 9 cut(s) 11, 128, 194, 835, 950, 1070, 1090, 1298, 1328
FriOI GRGCYC 2 cut(s) 141, 542
Fsp4HI GCNGC 3 cut(s) 444, 1128, 1301
FspBI CTAG 2 cut(s) 116, 642
GlaI GCGC 1 cut(s) 573
GluI GCNGC 3 cut(s) 444, 1128, 1301
GsaI CCCAGC 1 cut(s) 1285
GsuI CTGGAG 2 cut(s) 621, 686
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 4 cut(s) 93, 276, 353, 665
HapII CCGG 3 cut(s) 213, 1064, 1239
HhaI GCGC 1 cut(s) 574
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HpaII CCGG 3 cut(s) 213, 1064, 1239
HphI GGTGA 1 cut(s) 1170
Hpy166II GTNNAC 6 cut(s) 40, 424, 510, 776, 828, 1106
Hpy188I TCNGA 6 cut(s) 319, 579, 723, 893, 1137, 1255
Hpy188III TCNNGA 7 cut(s) 233, 302, 308, 997, 1227, 1339, 1347
Hpy8I GTNNAC 6 cut(s) 40, 424, 510, 776, 828, 1106
HpyAV CCTTC 5 cut(s) 433, 790, 894, 898, 1177
HpyCH4III ACNGT 2 cut(s) 44, 780
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 156, 677, 783, 807, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 789, 1069
HpyF3I CTNAG 2 cut(s) 1068, 1254
HpySE526I ACGT 1 cut(s) 250
HspAI GCGC 1 cut(s) 572
KroI GCCGGC 1 cut(s) 1063
KroNI GCCGGC 1 cut(s) 1065
Ksp22I TGATCA 3 cut(s) 304, 310, 1335
Kzo9I GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
LmnI GCTCC 2 cut(s) 640, 1117
Lsp1109I GCAGC 2 cut(s) 455, 1139
LweI GCATC 1 cut(s) 611
MabI ACCWGGT 1 cut(s) 853
MaeI CTAG 2 cut(s) 116, 642
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 191, 1325
MalI GATC 7 cut(s) 186, 231, 306, 312, 834, 1047, 1337
MbiI CCGCTC 2 cut(s) 635, 1300
MboI GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
MboII GAAGA 5 cut(s) 140, 275, 827, 1223, 1279
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 4 cut(s) 58, 141, 208, 542
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 6 cut(s) 162, 404, 485, 590, 597, 688
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 6 cut(s) 41, 336, 556, 837, 1255, 1328
Mox20I TGGCCA 1 cut(s) 353
MroNI GCCGGC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 3 cut(s) 213, 1064, 1239
MspR9I CCNGG 6 cut(s) 213, 536, 704, 855, 1115, 1240
MvaI CCWGG 4 cut(s) 536, 704, 855, 1115
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 2 cut(s) 789, 1069
NaeI GCCGGC 1 cut(s) 1065
NciI CCSGG 2 cut(s) 213, 1240
NdeI CATATG 1 cut(s) 1183
NdeII GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
NgoMIV GCCGGC 1 cut(s) 1063
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 807
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 2 cut(s) 307, 1346
PasI CCCWGGG 1 cut(s) 535
PdiI GCCGGC 1 cut(s) 1065
PfeI GAWTC 4 cut(s) 19, 658, 1010, 1091
PfoI TCCNGGA 2 cut(s) 211, 702
PkrI GCNGC 3 cut(s) 445, 1129, 1302
PleI GAGTC 6 cut(s) 40, 336, 556, 837, 1254, 1327
PpsI GAGTC 6 cut(s) 40, 336, 556, 837, 1254, 1327
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 4 cut(s) 534, 702, 853, 1113
PspFI CCCAGC 1 cut(s) 1281
PspGI CCWGG 4 cut(s) 534, 702, 853, 1113
PspN4I GGNNCC 1 cut(s) 207
PspXI VCTCGAGB 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 832
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 3 cut(s) 444, 1128, 1301
Sau3AI GATC 7 cut(s) 184, 229, 304, 310, 832, 1045, 1335
SchI GAGTC 6 cut(s) 41, 336, 556, 837, 1255, 1328
ScrFI CCNGG 6 cut(s) 213, 536, 704, 855, 1115, 1240
SduI GDGCHC 4 cut(s) 58, 141, 208, 542
SexAI ACCWGGT 1 cut(s) 853
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 1143
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SnaBI TACGTA 1 cut(s) 251
Sse9I AATT 6 cut(s) 162, 404, 485, 590, 597, 688
SsiI CCGC 4 cut(s) 123, 633, 740, 1300
SspMI CTAG 2 cut(s) 116, 642
StyD4I CCNGG 6 cut(s) 211, 534, 702, 853, 1113, 1238
StyI CCWWGG 3 cut(s) 354, 391, 836
TaaI ACNGT 2 cut(s) 44, 780
TaiI ACGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 30, 228, 1048
TasI AATT 6 cut(s) 162, 404, 485, 590, 597, 688
TatI WGTACW 1 cut(s) 697
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 4 cut(s) 19, 658, 1010, 1091
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 2 cut(s) 816, 933
TseI GCWGC 2 cut(s) 443, 1127
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 2 cut(s) 179, 1223
TspRI CASTG 2 cut(s) 816, 933
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 404
XceI RCATGY 1 cut(s) 807
XhoI CTCGAG 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 39, 509
XspI CTAG 2 cut(s) 116, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.