RchiOBHm_Chr1g0355241

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017563
Physical Location & Seq
Forward (+)
47915780 .. 47916999
1220 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGAAGCCATACATCGAAGGAGGAGGAACACTTGAAGTACTTCTTGTTGATGCTGAAGACATTAGACACACCAATGTCCTCGAAGAAGATGAAAAAGTTTGCTGGAATGAAAAATTCACATTTGAATTTTCTGATTGGAAAAAGTTGACTCATCTCAAATTCAGAATTATGGACACTGAGATGTTCACAGATGATGGATTTGTTGGTGAAACCATGATTCATATTGGTGGAATTATTACTGAGGGAAAGGACAGAGGATTCATTGAAGTAAAACCAGCTCCATATAATGTTGTACTTGAAGATGACACCTATAAAGGAGAGATAAAGATTGGATTCAGATTTGTTGCAAATAAAGAAGCAGTAGTGAACACAAGGGAGTACTTAGCAGAGAACAACACTAAACCAAGAGGATCAATCTGCAGGACCATTGCGAACTTATGGAAAGGTTTATGGTGGAAGTTTTTGTTTTGTCAAAGAACGGATTCTAATAACAGTCGGAAACATATTAAGGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

172

Amino Acids

20.05

Weight (kDa)

5.66

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 17 - 80 1.8e-07 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 3 cut(s) 113, 125, 158
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 3 cut(s) 39, 294, 380
AgsI TTSAA 4 cut(s) 35, 125, 266, 299
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 1 cut(s) 418
ApoI RAATTY 3 cut(s) 113, 125, 158
Asp700I GAANNNNTTC 2 cut(s) 39, 481
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 418
BmcAI AGTACT 2 cut(s) 39, 380
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 423
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 168, 231
BseRI GAGGAG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 169, 232
BspMAI CTGCAG 1 cut(s) 422
BspPI GGATC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 426
BssMI GATC 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 494
BstDEI CTNAG 3 cut(s) 177, 240, 382
BstKTI GATC 1 cut(s) 413
BstMBI GATC 1 cut(s) 410
BstSFI CTRYAG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 423
Csp6I GTAC 3 cut(s) 38, 293, 379
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 7, 278
CviKI_1 RGCY 2 cut(s) 7, 278
CviQI GTAC 3 cut(s) 38, 293, 379
DdeI CTNAG 3 cut(s) 177, 240, 382
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 75
FaeI CATG 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 1 cut(s) 213
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 5 cut(s) 148, 217, 258, 333, 482
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 3 cut(s) 147, 186, 367
Hpy188I TCNGA 4 cut(s) 133, 164, 338, 498
Hpy8I GTNNAC 3 cut(s) 147, 186, 367
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4V TGCA 2 cut(s) 347, 420
HpyF3I CTNAG 3 cut(s) 177, 240, 382
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 3 cut(s) 88, 288, 406
LweI GCATC 1 cut(s) 40
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 4 cut(s) 68, 95, 98, 311
MluCI AATT 5 cut(s) 113, 125, 158, 165, 231
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 6 cut(s) 14, 17, 89, 235, 248, 401
MroXI GAANNNNTTC 2 cut(s) 39, 481
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 3 cut(s) 72, 179, 225
NdeII GATC 1 cut(s) 410
NlaIII CATG 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 39, 481
PfeI GAWTC 4 cut(s) 217, 258, 333, 482
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 423
PstI CTGCAG 1 cut(s) 422
RsaI GTAC 3 cut(s) 39, 294, 380
RsaNI GTAC 3 cut(s) 38, 293, 379
RseI CAYNNNNRTG 3 cut(s) 72, 179, 225
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 1 cut(s) 423
ScaI AGTACT 2 cut(s) 39, 380
SchI GAGTC 1 cut(s) 142
SetI ASST 3 cut(s) 280, 311, 448
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 3 cut(s) 72, 179, 225
Sse9I AATT 5 cut(s) 113, 125, 158, 165, 231
TaaI ACNGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 15, 81
TasI AATT 5 cut(s) 113, 125, 158, 165, 231
TatI WGTACW 3 cut(s) 37, 292, 378
TfiI GAWTC 4 cut(s) 217, 258, 333, 482
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 17, 105, 123, 209, 250
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 3 cut(s) 113, 125, 158
XmnI GAANNNNTTC 2 cut(s) 39, 481
ZrmI AGTACT 2 cut(s) 39, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.