Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018143

Physical Location & Seq

Genomic Coordinates Forward (+)

48284624 .. 48288488

Gene Structure 3865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGACTGTTGATTCAGTGATTGCTGATGATGAGATAGCAAAGATCCGGCATGAATTTGATGCCGCAAAGCAGAGTTTCCTCAAGATTCCACAAGCACTCAAAGAAATGCTTAAGATAAATCTGGAAGGTTTGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGGCATGGCCAACCTGCTTTGTTATACATAGTTCCATTCATACTTGGTACCCTTCTTAACCTTGGGACAGATGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

107

Amino Acids

12.0

Weight (kDa)

4.97

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	46 - 103	2.4e-19	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018143)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355661 RchiOBHm_Chr3g0490641
rosa_laevigata	RLG00000002036 RLG00000003840
rosa_multiflora	Rmu_sc0001371.1_g000012
rosa_roxburghii	Rroxscaffold_180G00433290 Rroxscaffold_4G00300050
rosa_samantha	Rh2DG624700 Rh5AG413600 Rh6AG329600 Rh7BG437100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	194, 265
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	210
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	290
BccI	CCATC	2 cut(s)	232, 236
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	2 cut(s)	194, 265
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	292
BspMI	ACCTGC	2 cut(s)	194, 265
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	163
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 200
BstNI	CCWGG	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	2 cut(s)	194, 265
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	53, 248
CviJI	RGCY	3 cut(s)	194, 227, 252
CviKI_1	RGCY	3 cut(s)	194, 227, 252
CviQI	GTAC	1 cut(s)	291
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	56, 251
FaiI	YATR	8 cut(s)	54, 138, 198, 222, 249, 268, 272, 284
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	2 cut(s)	52, 247
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	56, 251
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	14, 88, 157
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	85, 125
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	122, 305
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 200
Hsp92II	CATG	2 cut(s)	56, 251
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	62, 110, 189, 197, 224, 270
LweI	GCATC	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	170, 214
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	92, 312
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	114, 300
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	252
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	191, 200
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	56, 251
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	14, 88
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	114, 300
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	7 cut(s)	133, 196, 208, 221, 259, 306, 323
SfaNI	GCATC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	83, 113
SmoI	CTYRAG	2 cut(s)	83, 113
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	14, 88
Tru1I	TTAA	2 cut(s)	114, 300
Tru9I	TTAA	2 cut(s)	114, 300
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	69, 271
TspRI	CASTG	1 cut(s)	24
Vha464I	CTTAAG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.