Rh6AG329600

5'-nucleotidase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018143
Physical Location & Seq
Reverse (-)
53162762 .. 53166389
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG329600.1

Sequence Viewer

Length: 270 bp
ATGGTTCTGAGGCCATTTGTTCTGACGAGCTTTTCATCACCTGGAGCTCTACAAGATTTAGGTTTTCGGAGTTATGAAGCAATTGCTACACCCGAGCCAACGGTGTTGAAATTTGAAAATGGAGAGACTGTTGATTCAGTGATTGCTGATGATGAGATAGCAAAGATCCGGCATGAATTTGATGCCGCAAAGCAGAGTTTCCTCAAGATTCCACAAGCACTCAAAGAAATGCTTAAGATAAATCTGGAAGCTCTCACCGGTCACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
5_nucleotid

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

5.02

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 2 cut(s) 110, 176
AflII CTTAAG 1 cut(s) 233
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 109, 116
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 30, 47, 251
AluI AGCT 3 cut(s) 30, 47, 251
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 110, 176
AsiGI ACCGGT 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 30, 247, 254
AvaI CYCGRG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse118I RCCGGY 1 cut(s) 257
BseBI CCWGG 1 cut(s) 42
BshFI GGCC 1 cut(s) 13
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 169, 258
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 160
BspTI CTTAAG 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 103, 130
BstAFI CTTAAG 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 8
BstEII GGTNACC 1 cut(s) 260
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 165
BstNI CCWGG 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 257
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 13, 30, 47, 97, 251
CviKI_1 RGCY 5 cut(s) 13, 30, 47, 97, 251
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 75, 174, 268
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 13
HapII CCGG 2 cut(s) 169, 258
Hin1II CATG 1 cut(s) 176
HinfI GANTC 2 cut(s) 134, 208
HpaII CCGG 2 cut(s) 169, 258
HphI GGTGA 3 cut(s) 30, 247, 254
Hpy188I TCNGA 3 cut(s) 9, 24, 69
Hpy188III TCNNGA 2 cut(s) 205, 245
HpyCH4III ACNGT 2 cut(s) 103, 130
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 27, 54, 182, 230
LweI GCATC 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 3 cut(s) 81, 110, 176
MnlI CCTC 2 cut(s) 3, 212
MseI TTAA 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 2 cut(s) 169, 258
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 42
NdeII GATC 1 cut(s) 165
NlaIII CATG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 134, 208
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 40
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 165
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 49
SetI ASST 6 cut(s) 32, 43, 49, 64, 253, 267
SfaNI GCATC 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 203, 233
SmoI CTYRAG 2 cut(s) 203, 233
Sse9I AATT 3 cut(s) 81, 110, 176
SsiI CCGC 1 cut(s) 186
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 103, 130
TasI AATT 3 cut(s) 81, 110, 176
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 134, 208
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 24, 90, 189
TspRI CASTG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 233
XapI RAATTY 2 cut(s) 110, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.