Rroxscaffold_180G00433290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0018143
Physical Location & Seq
Forward (+)
123929 .. 126284
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433290.1

Sequence Viewer

Length: 294 bp
ATGGTTCTGAGGCCATTTGTTCTGGTGAGATCGAAGCGACTAGTTTCTCCCTCAGTTCCAGGTAATTTGTTCACCGGCGACGTTTTCCAAGGTGTGGAGAAGGAGGCGGAGGAGCCGGTTAAGAGGCCGTTTGTTCAGGCGAGATCGAAGTGTTGGTCCGATGATGATTGCTTCTTACGACGACAGCGGTGGCGTCTCCGACGAAGGCTCCTAATCTTAATTACAAGACGAGCTTTTCATCACCTGGAGCTCTACAAGAATTCTCCCCTTTGCAATTGTAGTAGTAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.56

Weight (kDa)

10.8

Isoelectric Point (pI)

97.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 2 cut(s) 107, 187
AcsI RAATTY 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 40
AjnI CCWGG 2 cut(s) 58, 243
AluBI AGCT 2 cut(s) 233, 250
AluI AGCT 2 cut(s) 233, 250
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 2 cut(s) 11, 125
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 37, 64, 233
AvaII GGWCC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 60, 245
BcoDI GTCTC 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 60, 245
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 114, 209
BmrFI CCNGG 2 cut(s) 60, 245
BpmI CTGGAG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 2 cut(s) 74, 115
BseBI CCWGG 2 cut(s) 60, 245
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 125
BshFI GGCC 2 cut(s) 13, 127
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 75, 116
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsnI GGCC 2 cut(s) 13, 127
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 29, 143
BspACI CCGC 2 cut(s) 107, 187
BspANI GGCC 2 cut(s) 13, 127
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 114, 209
BsrFI RCCGGY 2 cut(s) 74, 115
BssAI RCCGGY 2 cut(s) 74, 115
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 29, 143
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 60, 245
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 8, 52
BstKTI GATC 2 cut(s) 32, 146
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 29, 143
BstNI CCWGG 2 cut(s) 60, 245
BstSCI CCNGG 2 cut(s) 58, 243
BsuRI GGCC 2 cut(s) 13, 127
Cfr10I RCCGGY 2 cut(s) 74, 115
Cfr13I GGNCC 1 cut(s) 156
CseI GACGC 1 cut(s) 182
CviJI RGCY 6 cut(s) 13, 115, 127, 208, 233, 250
CviKI_1 RGCY 6 cut(s) 13, 115, 127, 208, 233, 250
DdeI CTNAG 2 cut(s) 8, 52
DpnI GATC 2 cut(s) 31, 145
DpnII GATC 2 cut(s) 29, 143
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 58, 243
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 200
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 13, 127
HapII CCGG 2 cut(s) 75, 116
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 193
HpaII CCGG 2 cut(s) 75, 116
HphI GGTGA 3 cut(s) 37, 64, 233
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 9, 160, 200
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 3 cut(s) 83, 183, 204
HpyAV CCTTC 2 cut(s) 94, 198
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 273
HpyF3I CTNAG 2 cut(s) 8, 52
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 29, 143
LmnI GCTCC 3 cut(s) 112, 213, 247
LpnPI CCDG 8 cut(s) 8, 45, 72, 88, 122, 129, 230, 257
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 31, 145
MboI GATC 2 cut(s) 29, 143
MfeI CAATTG 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 4 cut(s) 64, 219, 259, 274
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 5 cut(s) 3, 61, 97, 103, 117
MseI TTAA 2 cut(s) 120, 218
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 75, 116
MspR9I CCNGG 2 cut(s) 60, 245
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 2 cut(s) 60, 245
NdeII GATC 2 cut(s) 29, 143
NlaIV GGNNCC 2 cut(s) 114, 209
PflMI CCANNNNNTGG 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 58, 243
PspGI CCWGG 2 cut(s) 58, 243
PspN4I GGNNCC 2 cut(s) 114, 209
PspPI GGNCC 1 cut(s) 156
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 120, 218
Sau3AI GATC 2 cut(s) 29, 143
Sau96I GGNCC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 60, 245
SduI GDGCHC 1 cut(s) 252
SetI ASST 6 cut(s) 64, 84, 94, 235, 246, 252
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 4 cut(s) 64, 219, 259, 274
SsiI CCGC 2 cut(s) 107, 187
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 58, 243
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 32, 146
TasI AATT 4 cut(s) 64, 219, 259, 274
Tru1I TTAA 2 cut(s) 120, 218
Tru9I TTAA 2 cut(s) 120, 218
TspDTI ATGAA 1 cut(s) 227
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 259
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.