Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018143

Physical Location & Seq

Genomic Coordinates Reverse (-)

20021163 .. 20029818

Gene Structure 8656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCTTCATGGCAACCCCGAGCTTCCGCTCATGCCTTCATGGCAACCCCGAGCTTCCGTTCATGCCTTCATGGCAACCTAGAGCTTCCACTCACGCCTTCGCGGCACCCCGAGCTTCCGCTCATGCCCTCACGGCACCCCCAAACTTCCGCTCATGCCTTCACCGCAACCCCGAGCTTCCTTTCACGCCTTAACGGCAACCCCGAGCTTCCGGCTCACAAGCTTTCCGCTCATGCCTTCGCTGCAACCCCGAGCTTCCCGCTCACGAGCTTCTCGCTCATGCCTTTGCGGAAGAGTATTCCTTCACCTATAAAAGGAATGCCTCCTCCCACAACTCAACACACTCCATTACACACTTTTTACACTTCATTAGTTATCACATCGCCCAAACAGATACTAAATCATGACGGTAACTTTTACAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGTAATGACGACTTATGGTGCAGGTCTCCCGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATATTTCCATTCACACTTGGTAAGATTCTAAGCTTGGATAATCGGCGTAACATGCATAGTGTGCCTCCGACCTTTCTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

10.19

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	139 - 198	4.8e-17	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018143)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355661 RchiOBHm_Chr3g0490641
rosa_laevigata	RLG00000002036 RLG00000003840
rosa_multiflora	Rmu_sc0001371.1_g000012
rosa_roxburghii	Rroxscaffold_180G00433290 Rroxscaffold_4G00300050
rosa_samantha	Rh2DG624700 Rh5AG413600 Rh6AG329600 Rh7BG437100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	482, 553
AccB1I	GGYRCC	2 cut(s)	105, 135
AccBSI	CCGCTC	5 cut(s)	29, 121, 152, 230, 262
AccII	CGCG	1 cut(s)	103
AciI	CCGC	8 cut(s)	27, 103, 119, 150, 165, 228, 260, 289
AcoI	YGGCCR	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	520
AleI	CACNNNNGTG	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	500
Ama87I	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	639
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	154, 297, 496
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	105, 135
BauI	CACGAG	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	520, 524
BceAI	ACGGC	2 cut(s)	149, 211
BcgI	CGANNNNNNTGC	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	80
BfuAI	ACCTGC	2 cut(s)	482, 553
BglI	GCCNNNNNGGC	6 cut(s)	10, 41, 72, 103, 133, 195
BisI	GCNGC	2 cut(s)	104, 243
BlsI	GCNGC	2 cut(s)	105, 244
Bme1390I	CCNGG	1 cut(s)	500
BmeT110I	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
BmiI	GGNNCC	2 cut(s)	107, 137
BmrFI	CCNGG	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	2 cut(s)	105, 135
BsiHKCI	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
BsiSI	CCGG	2 cut(s)	212, 500
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
Bsp119I	TTCGAA	1 cut(s)	451
BspACI	CCGC	8 cut(s)	27, 103, 119, 150, 165, 228, 260, 289
BspANI	GGCC	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	107, 137
BspMI	ACCTGC	2 cut(s)	482, 553
BspT104I	TTCGAA	1 cut(s)	451
BspT107I	GGYRCC	2 cut(s)	105, 135
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	5 cut(s)	29, 121, 152, 230, 262
BssSI	CACGAG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	2 cut(s)	287, 453
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	587
BstEII	GGTNACC	1 cut(s)	502
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	639
BstMAI	GTCTC	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	535
BveI	ACCTGC	2 cut(s)	482, 553
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	639
DdeI	CTNAG	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	287, 453
EarI	CTCTTC	2 cut(s)	287, 453
Eco31I	GGTCTC	1 cut(s)	500
Eco88I	CYCGRG	6 cut(s)	18, 49, 110, 172, 203, 250
Eco91I	GGTNACC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	615
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	104, 243
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	104, 243
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	2 cut(s)	104, 243
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	2 cut(s)	212, 500
HhaI	GCGC	1 cut(s)	639
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	221, 589
HinfI	GANTC	2 cut(s)	445, 583
HpaII	CCGG	2 cut(s)	212, 500
HphI	GGTGA	3 cut(s)	154, 297, 496
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	627
Hpy188III	TCNNGA	2 cut(s)	265, 404
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	7 cut(s)	15, 46, 77, 108, 169, 247, 312
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	245, 491, 613
HpyF3I	CTNAG	1 cut(s)	587
HspAI	GCGC	1 cut(s)	637
LpnPI	CCDG	5 cut(s)	225, 406, 477, 513, 558
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	4 cut(s)	410, 458, 502, 605
MbiI	CCGCTC	5 cut(s)	29, 121, 152, 230, 262
MboII	GAAGA	2 cut(s)	304, 440
MlsI	TGGCCA	1 cut(s)	540
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	139, 333, 336, 633
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	2 cut(s)	212, 500
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	324
MvnI	CGCG	1 cut(s)	103
NciI	CCSGG	1 cut(s)	500
NlaIV	GGNNCC	2 cut(s)	107, 137
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	105, 244
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PspEI	GGTNACC	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	107, 137
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	104, 243
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	509
SsiI	CCGC	8 cut(s)	27, 103, 119, 150, 165, 228, 260, 289
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	451
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	28, 51, 59, 357
TspGWI	ACGGA	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	312
XceI	RCATGY	1 cut(s)	613
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.