Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018143

Physical Location & Seq

Genomic Coordinates Forward (+)

24554250 .. 24556032

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTCTAAGGCCATTTGTTCCGGTGAGATCGAAGCGACTGGTTTCTTCCTCAGTTCCCGGTAATTTGTTCACTAGCGATGTTTTCCAAGGTGTGGAGAAGGAGGCGGAGGAGCGGGTTAGGAGGCCGTTTGTTCCGGTGAGATCAAACCGTATTCGGAGTTATGGAGCAATTGCTACACCCGAGCCAACGGTGTTGAAATTTGAAAATGGAGAGACTGTTGATTCAGTGATTGCTGATGATGAGATAGCAAAGATCTGGCATGAATTTGATGCCGCAAAGCAGAGTTTCCTCAAGATTCCACAGGCACTTAAAGAAATGCTTAAGATAAATCTGGAAGGCGATTATCGACGTCGGTTCGGCCTCGTCGACGACGCCAAGTCGTTGTTGCTGCTCCGGGAGAGGTCAGTTCAGCCGACTTGCTACTTCGTCGAGGAGGTCACTGAGGAGGTCATCACGGGCTTCGATGAGACCGATCTCCACTGCTCGACCCGAGGACCGGATCCGGCAAGGACCTTAGCCCCTTCGCCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

5.55

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018143)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355661 RchiOBHm_Chr3g0490641
rosa_laevigata	RLG00000002036 RLG00000003840
rosa_multiflora	Rmu_sc0001371.1_g000012
rosa_roxburghii	Rroxscaffold_180G00433290 Rroxscaffold_4G00300050
rosa_samantha	Rh2DG624700 Rh5AG413600 Rh6AG329600 Rh7BG437100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	3 cut(s)	107, 115, 276
AclWI	GGATC	2 cut(s)	497, 510
AcsI	RAATTY	2 cut(s)	200, 266
AcyI	GRCGYC	2 cut(s)	352, 375
AfiI	CCNNNNNNNGG	2 cut(s)	94, 499
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	199, 206
AhdI	GACNNNNNGTC	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	209, 464
AlwI	GGATC	2 cut(s)	497, 510
Ama87I	CYCGRG	2 cut(s)	182, 492
AoxI	GGCC	3 cut(s)	11, 125, 361
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	200, 266
AspS9I	GGNCC	2 cut(s)	497, 513
AsuC2I	CCSGG	2 cut(s)	60, 398
AsuHPI	GGTGA	2 cut(s)	37, 151
AvaI	CYCGRG	2 cut(s)	182, 492
AvaII	GGWCC	2 cut(s)	497, 513
BamHI	GGATCC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	378
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	60, 398
BcoDI	GTCTC	2 cut(s)	209, 464
BfaI	CTAG	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	2 cut(s)	276, 392
BlsI	GCNGC	2 cut(s)	277, 393
Bme1390I	CCNGG	2 cut(s)	60, 398
Bme18I	GGWCC	2 cut(s)	497, 513
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	2 cut(s)	182, 492
BmgT120I	GGNCC	2 cut(s)	497, 513
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	60, 398
BmsI	GCATC	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	60, 398
BsaHI	GRCGYC	2 cut(s)	352, 375
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	88, 493
BsaWI	WCCGGW	3 cut(s)	22, 136, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 499
Bse1I	ACTGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	88, 493
BseLI	CCNNNNNNNGG	2 cut(s)	94, 499
BseMII	CTCAG	2 cut(s)	66, 435
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	3 cut(s)	125, 449, 461
BseXI	GCAGC	1 cut(s)	378
BshFI	GGCC	3 cut(s)	13, 127, 363
BsiHKCI	CYCGRG	2 cut(s)	182, 492
BsiSI	CCGG	6 cut(s)	23, 60, 137, 397, 500, 506
BslI	CCNNNNNNNGG	2 cut(s)	94, 499
BsmAI	GTCTC	2 cut(s)	209, 464
BsnI	GGCC	3 cut(s)	13, 127, 363
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	2 cut(s)	182, 492
Bsp143I	GATC	5 cut(s)	29, 143, 255, 475, 502
BspACI	CCGC	3 cut(s)	107, 115, 276
BspANI	GGCC	3 cut(s)	13, 127, 363
BspCNI	CTCAG	2 cut(s)	65, 436
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	497, 510
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	88, 493
BssMI	GATC	5 cut(s)	29, 143, 255, 475, 502
BssNI	GRCGYC	2 cut(s)	352, 375
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	152, 193, 220
BstACI	GRCGYC	2 cut(s)	352, 375
BstAFI	CTTAAG	1 cut(s)	323
BstDEI	CTNAG	4 cut(s)	8, 52, 444, 517
BstKTI	GATC	5 cut(s)	32, 146, 258, 478, 505
BstMAI	GTCTC	2 cut(s)	209, 464
BstMBI	GATC	5 cut(s)	29, 143, 255, 475, 502
BstSCI	CCNGG	2 cut(s)	58, 396
BstV1I	GCAGC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	255, 502
BstYI	RGATCY	2 cut(s)	255, 502
BsuRI	GGCC	3 cut(s)	13, 127, 363
BtgZI	GCGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	234, 441, 481
Cfr13I	GGNCC	2 cut(s)	497, 513
CseI	GACGC	1 cut(s)	383
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	13, 127, 187, 363, 415, 462, 521
CviKI_1	RGCY	7 cut(s)	13, 127, 187, 363, 415, 462, 521
DdeI	CTNAG	4 cut(s)	8, 52, 444, 517
DpnI	GATC	5 cut(s)	31, 145, 257, 477, 504
DpnII	GATC	5 cut(s)	29, 143, 255, 475, 502
DriI	GACNNNNNGTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	497, 513
Eco88I	CYCGRG	2 cut(s)	182, 492
EcoO109I	RGGNCCY	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	165, 264
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	276, 392
Fsp4HI	GCNGC	2 cut(s)	276, 392
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	276, 392
HaeIII	GGCC	3 cut(s)	13, 127, 363
HapII	CCGG	6 cut(s)	23, 60, 137, 397, 500, 506
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	2 cut(s)	352, 375
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	224, 298
HpaII	CCGG	6 cut(s)	23, 60, 137, 397, 500, 506
HphI	GGTGA	2 cut(s)	37, 151
Hpy166II	GTNNAC	2 cut(s)	72, 370
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	295, 335
Hpy8I	GTNNAC	2 cut(s)	72, 370
Hpy99I	CGWCG	7 cut(s)	354, 357, 371, 374, 377, 434, 535
HpyAV	CCTTC	3 cut(s)	94, 332, 534
HpyCH4III	ACNGT	3 cut(s)	152, 193, 220
HpyCH4IV	ACGT	2 cut(s)	352, 533
HpyF3I	CTNAG	4 cut(s)	8, 52, 444, 517
HpySE526I	ACGT	2 cut(s)	352, 533
Hsp92I	GRCGYC	2 cut(s)	352, 375
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	5 cut(s)	29, 143, 255, 475, 502
LmnI	GCTCC	3 cut(s)	112, 167, 399
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	352, 533
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	5 cut(s)	31, 145, 257, 477, 504
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	5 cut(s)	29, 143, 255, 475, 502
MboII	GAAGA	1 cut(s)	39
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	255, 502
MluCI	AATT	4 cut(s)	64, 171, 200, 266
MseI	TTAA	2 cut(s)	312, 324
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	6 cut(s)	23, 60, 137, 397, 500, 506
MspR9I	CCNGG	2 cut(s)	60, 398
MunI	CAATTG	1 cut(s)	171
NciI	CCSGG	2 cut(s)	60, 398
NdeII	GATC	5 cut(s)	29, 143, 255, 475, 502
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 471
PfeI	GAWTC	2 cut(s)	224, 298
PflMI	CCANNNNNTGG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	2 cut(s)	277, 393
PpuMI	RGGWCCY	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	497, 513
PspPPI	RGGWCCY	1 cut(s)	513
PsuI	RGATCY	2 cut(s)	255, 502
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	312, 324
SatI	GCNGC	2 cut(s)	276, 392
Sau3AI	GATC	5 cut(s)	29, 143, 255, 475, 502
Sau96I	GGNCC	2 cut(s)	497, 513
ScrFI	CCNGG	2 cut(s)	60, 398
SetI	ASST	7 cut(s)	94, 355, 407, 441, 453, 518, 536
SfaNI	GCATC	1 cut(s)	262
SgrDI	CGTCGACG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	497, 513
SmlI	CTYRAG	2 cut(s)	293, 323
SmoI	CTYRAG	2 cut(s)	293, 323
Sse9I	AATT	4 cut(s)	64, 171, 200, 266
SsiI	CCGC	3 cut(s)	107, 115, 276
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	58, 396
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	152, 193, 220
TaiI	ACGT	2 cut(s)	355, 536
TaqI	TCGA	6 cut(s)	32, 349, 369, 432, 465, 488
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	64, 171, 200, 266
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	224, 298
Tru1I	TTAA	2 cut(s)	312, 324
Tru9I	TTAA	2 cut(s)	312, 324
TscAI	CASTG	3 cut(s)	234, 448, 488
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	234, 448, 488
Van91I	CCANNNNNTGG	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	497, 513
XapI	RAATTY	2 cut(s)	200, 266
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.