Rmu_sc0001371.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001371.1
OG0018143
Physical Location & Seq
Forward (+)
71421 .. 75951
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001371.1_g000012.1.cds

Sequence Viewer

Length: 567 bp
atgcggccaatggttctgagtccatttgttctggtgagatcgaagcgactggtttctccttcagttctcggtaatttgttcaccaacgacgttttccaaggtgtgaagaagaaggcggaggagcgggttaggaggccatttgttcctgcaagatcgaagcgttggccaactctggcgggtctccaaccaactccggccggtctccggtcaacctccgacgactctccagttgacttccggccaattcagacggtgacggatgccgcagaagaagtggcggagctcgtggaaaaggtgtctgaggaagtagaggaggttgcggacgatatcggcaaccatcttcccgaaggtaaacttcgacatgctgccatgcgtgtggaggaattagctgacaaaacaggcaaggctgcggccatggcggatgatattattgagaaggttgaggaagtggagaaagaggtagactccatcactgacaaggccaacgagaaaaagaaagaagacaaaatcaaagaagcgagtaccgagcaagataatagtattaaaaatgagacagttgcagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.85

Weight (kDa)

5.05

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 462
AciI CCGC 9 cut(s) 4, 116, 124, 176, 264, 278, 320, 410, 419
AcoI YGGCCR 5 cut(s) 5, 164, 195, 239, 411
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 283, 389
AluI AGCT 2 cut(s) 283, 389
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 185, 206, 545
AoxI GGCC 7 cut(s) 5, 134, 164, 195, 239, 411, 480
ApeKI GCWGC 2 cut(s) 365, 407
AsuHPI GGTGA 3 cut(s) 46, 73, 265
BalI TGGCCA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 285
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 352, 394
BccI CCATC 2 cut(s) 345, 476
BcoDI GTCTC 3 cut(s) 185, 206, 545
BisI GCNGC 5 cut(s) 5, 264, 366, 408, 411
BlsI GCNGC 5 cut(s) 6, 265, 367, 409, 412
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 185, 206
BsaJI CCNNGG 2 cut(s) 97, 414
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 54, 227
BseDI CCNNGG 2 cut(s) 97, 414
BseGI GGATG 2 cut(s) 265, 427
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 8, 291
BseNI ACTGG 2 cut(s) 54, 227
BseRI GAGGAG 2 cut(s) 134, 326
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 352, 394
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 7 cut(s) 7, 136, 166, 197, 241, 413, 482
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 4 cut(s) 194, 198, 205, 238
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 3 cut(s) 185, 206, 545
BsnI GGCC 7 cut(s) 7, 136, 166, 197, 241, 413, 482
Bso31I GGTCTC 2 cut(s) 185, 206
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 38, 152
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 9 cut(s) 4, 116, 124, 176, 264, 278, 320, 410, 419
BspANI GGCC 7 cut(s) 7, 136, 166, 197, 241, 413, 482
BspCNI CTCAG 2 cut(s) 9, 292
BspTNI GGTCTC 2 cut(s) 185, 206
BsrBI CCGCTC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 54, 227
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 97, 414
BssMI GATC 2 cut(s) 38, 152
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 2 cut(s) 97, 414
Bst2BI CACGAG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 253, 556
BstDEI CTNAG 2 cut(s) 17, 300
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 265, 427
BstKTI GATC 2 cut(s) 41, 155
BstMAI GTCTC 3 cut(s) 185, 206, 545
BstMBI GATC 2 cut(s) 38, 152
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 352, 394
BstV2I GAAGAC 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 376
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 7 cut(s) 7, 136, 166, 197, 241, 413, 482
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 265, 427
BtsIMutI CAGTG 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 197
Csp6I GTAC 1 cut(s) 522
CviAII CATG 3 cut(s) 362, 370, 415
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 2 cut(s) 17, 300
DpnI GATC 2 cut(s) 40, 154
DpnII GATC 2 cut(s) 38, 152
EaeI YGGCCR 5 cut(s) 5, 164, 195, 239, 411
EagI CGGCCG 1 cut(s) 195
EciI GGCGGA 3 cut(s) 131, 293, 434
Ecl136II GAGCTC 1 cut(s) 283
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 97, 414
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 2 cut(s) 185, 206
Eco32I GATATC 1 cut(s) 328
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 97, 414
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 97, 414
FaeI CATG 3 cut(s) 365, 373, 418
FaiI YATR 3 cut(s) 363, 371, 416
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 3 cut(s) 361, 369, 414
FauI CCCGC 2 cut(s) 117, 169
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 5 cut(s) 5, 264, 366, 408, 411
FokI GGATG 2 cut(s) 272, 434
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 5 cut(s) 5, 264, 366, 408, 411
GluI GCNGC 5 cut(s) 5, 264, 366, 408, 411
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 7 cut(s) 7, 136, 166, 197, 241, 413, 482
HapII CCGG 4 cut(s) 194, 198, 205, 238
Hin1II CATG 3 cut(s) 365, 373, 418
HincII GTYRAC 2 cut(s) 210, 232
HindII GTYRAC 2 cut(s) 210, 232
HinfI GANTC 3 cut(s) 19, 221, 464
HpaII CCGG 4 cut(s) 194, 198, 205, 238
HphI GGTGA 3 cut(s) 46, 73, 265
Hpy166II GTNNAC 5 cut(s) 81, 210, 232, 353, 463
Hpy188I TCNGA 4 cut(s) 18, 217, 249, 301
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 5 cut(s) 81, 210, 232, 353, 463
Hpy99I CGWCG 2 cut(s) 92, 221
HpyAV CCTTC 4 cut(s) 69, 106, 341, 430
HpyCH4III ACNGT 2 cut(s) 253, 556
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 149, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 17, 300
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 3 cut(s) 365, 373, 418
Kzo9I GATC 2 cut(s) 38, 152
LmnI GCTCC 2 cut(s) 121, 280
Lsp1109I GCAGC 2 cut(s) 352, 394
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 40, 154
MbiI CCGCTC 1 cut(s) 124
MboI GATC 2 cut(s) 38, 152
MboII GAAGA 5 cut(s) 118, 121, 281, 332, 512
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 3 cut(s) 73, 243, 383
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 3 cut(s) 28, 215, 458
MmeI TCCRAC 2 cut(s) 208, 240
MnlI CCTC 9 cut(s) 112, 126, 223, 295, 304, 307, 373, 436, 451
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 4 cut(s) 194, 198, 205, 238
MwoI GCNNNNNNNGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 38, 152
NlaIII CATG 3 cut(s) 365, 373, 418
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 365
PkrI GCNGC 5 cut(s) 6, 265, 367, 409, 412
PleI GAGTC 3 cut(s) 27, 215, 458
PpsI GAGTC 3 cut(s) 27, 215, 458
Psp124BI GAGCTC 1 cut(s) 285
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 5 cut(s) 5, 264, 366, 408, 411
Sau3AI GATC 2 cut(s) 38, 152
SchI GAGTC 3 cut(s) 28, 215, 458
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 3 cut(s) 73, 243, 383
SsiI CCGC 9 cut(s) 4, 116, 124, 176, 264, 278, 320, 410, 419
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 2 cut(s) 97, 414
TaaI ACNGT 2 cut(s) 253, 556
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 41, 155, 358
TasI AATT 3 cut(s) 73, 243, 383
TauI GCSGC 3 cut(s) 7, 266, 413
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 365, 407
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 478
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.