RchiOBHm_Chr1g0356321

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017871
Physical Location & Seq
Reverse (-)
48805554 .. 48808664
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGGAGCATTGGAAAGCTGCTAGAAAATTGATTCTGGAAATTTTGCTGTTGGATATGTGGATTCTGACTATGGTGGTGATTTGGATAATGGGAAGTCTAGAACAGGATACCCCAGCTTTATCAACAACTGAAGCAGAGTATATGGCCACTGCGGAAGCCGTAAAGGAAATTTTATGGTTACATGGGTTAATGAATGAGTTGGGGATTTCTCAGAATCAGGTGGAGGTTCATTGTGATAGTCAACGTGCCATTTATTTGGGAAAGTATCAGGTTTGTCATGCTAGAACCAAACATATTAATGTTCATTATCACATGATTCGTGAAGAAGTTGAAAAGGGAAGGATTGCTCTTGTGAAGATTTGTACTGAGAATAACCCTACTGATATGTTGACAAAGTTGTTGGAAGAGCATATGGAATTGTTCGATGTTTGCTTAGCAAGAATGATTCTTGTTAAGATTTATATCTTTATTGTCACTGATAGGATGGATCATTCAGTAAGACCCTCTGTTCAACATAATTGCAGGATCGAATATAATGTTGAGCCTTGCAGTAATGTTGATACGGTAAATGATCAATGCTTGGACAATCAATGGGCAATGATTACCATGCCAATTGATGGTTATATTGTCTATGGTAAAGGATTTTCTTTATGTAATGTATTGTCTGTAACTGGTCTGCTTGTTTATGATGATGTTAGAAAGGACCGGATTCTATGTTCGTCAATACCAATTTATGGACAAAGTGAGGAAGTTAGAGACGAGGCTGGTTACATTGTTGGAATGTCAACTTGCCCACATCTGGGCACTGTCAAAATAAAGGATGGGGATACTCTAGTTGTAGGATCTAATTACAGCAGCTCGCAGCCGCACACAAGAGTCATGGGCGCCTCTTCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURNod19

Protein Analysis

299

Amino Acids

33.94

Weight (kDa)

5.43

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 148 - 296 7e-37 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017871)

Species Orthologous Gene IDs
malus_domestica MD09G1281800.v1.1
pyrus_communis pycom12g08370 pycom15g03640 pycom15g18740 pycom15g38670
rosa_chinensis RchiOBHm_Chr1g0356321
rosa_multiflora Rmu_sc0000605.1_g000016
rosa_roxburghii Rroxscaffold_2G00133080 Rroxscaffold_4G00285200 Rroxscaffold_7G00191550
rosa_wichuraiana Rw2G001150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 884
AccB7I CCANNNNNTGG 2 cut(s) 617, 734
AciI CCGC 2 cut(s) 152, 866
AclWI GGATC 3 cut(s) 495, 533, 850
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 2 cut(s) 39, 168
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 4 cut(s) 617, 734, 799, 800
AgsI TTSAA 2 cut(s) 332, 512
AloI GAACNNNNNNTCC 2 cut(s) 700, 732
AluBI AGCT 3 cut(s) 17, 116, 858
AluI AGCT 3 cut(s) 17, 116, 858
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 3 cut(s) 495, 533, 850
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 17, 855, 862
ApoI RAATTY 2 cut(s) 39, 168
AseI ATTAAT 1 cut(s) 297
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 806
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BalI TGGCCA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 884
BbvI GCAGC 3 cut(s) 4, 867, 874
BccI CCATC 3 cut(s) 478, 611, 815
BceAI ACGGC 1 cut(s) 143
BciVI GTATCC 2 cut(s) 100, 820
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 4 cut(s) 21, 98, 282, 833
BfoI RGCGCY 1 cut(s) 888
BfuI GTATCC 2 cut(s) 100, 820
BisI GCNGC 4 cut(s) 18, 856, 863, 866
BlpI GCTNAGC 1 cut(s) 433
BlsI GCNGC 4 cut(s) 19, 857, 864, 867
Bme18I GGWCC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 1 cut(s) 886
Bpu1102I GCTNAGC 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 885
BsaWI WCCGGW 1 cut(s) 705
Bsc4I CCNNNNNNNGG 4 cut(s) 617, 734, 799, 800
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 461
BseGI GGATG 2 cut(s) 489, 826
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 4 cut(s) 617, 734, 799, 800
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 224, 357
BseNI ACTGG 1 cut(s) 676
BseSI GKGCMC 1 cut(s) 806
BseXI GCAGC 3 cut(s) 4, 867, 874
BseYI CCCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 884
BsiSI CCGG 1 cut(s) 706
BslI CCNNNNNNNGG 4 cut(s) 617, 734, 799, 800
BsmAI GTCTC 1 cut(s) 750
BsmBI CGTCTC 1 cut(s) 750
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 806
Bsp143I GATC 4 cut(s) 487, 525, 571, 842
Bsp1720I GCTNAGC 1 cut(s) 433
BspACI CCGC 2 cut(s) 152, 866
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 2 cut(s) 223, 358
BspLI GGNNCC 1 cut(s) 886
BspPI GGATC 3 cut(s) 495, 533, 850
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 676
BssMI GATC 4 cut(s) 487, 525, 571, 842
BssNI GRCGYC 1 cut(s) 885
Bst4CI ACNGT 2 cut(s) 565, 808
Bst6I CTCTTC 2 cut(s) 399, 895
BstACI GRCGYC 1 cut(s) 885
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 3 cut(s) 210, 366, 433
BstF5I GGATG 2 cut(s) 489, 826
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 4 cut(s) 490, 528, 574, 845
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 4 cut(s) 487, 525, 571, 842
BstSLI GKGCMC 1 cut(s) 806
BstV1I GCAGC 3 cut(s) 4, 867, 874
BstX2I RGATCY 1 cut(s) 842
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 842
BsuI GTATCC 2 cut(s) 100, 820
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 489, 826
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 147, 474, 804
Cac8I GCNNGC 1 cut(s) 860
CfoI GCGC 1 cut(s) 887
Cfr13I GGNCC 1 cut(s) 703
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 182, 278, 313, 607, 880
CviJI RGCY 8 cut(s) 17, 116, 146, 158, 544, 764, 858, 865
CviKI_1 RGCY 8 cut(s) 17, 116, 146, 158, 544, 764, 858, 865
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 3 cut(s) 210, 366, 433
DinI GGCGCC 1 cut(s) 886
DpnI GATC 4 cut(s) 489, 527, 573, 844
DpnII GATC 4 cut(s) 487, 525, 571, 842
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 399, 895
EarI CTCTTC 2 cut(s) 399, 895
Eco47I GGWCC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 886
EheI GGCGCC 1 cut(s) 886
Esp3I CGTCTC 1 cut(s) 750
FaeI CATG 5 cut(s) 185, 281, 316, 610, 883
FatI CATG 5 cut(s) 181, 277, 312, 606, 879
FauNDI CATATG 1 cut(s) 411
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 18, 856, 863, 866
FokI GGATG 2 cut(s) 496, 833
Fsp4HI GCNGC 4 cut(s) 18, 856, 863, 866
FspBI CTAG 4 cut(s) 21, 98, 282, 833
GlaI GCGC 1 cut(s) 886
GluI GCNGC 4 cut(s) 18, 856, 863, 866
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 888
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 706
HhaI GCGC 1 cut(s) 887
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 5 cut(s) 185, 281, 316, 610, 883
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HincII GTYRAC 3 cut(s) 242, 390, 786
HindII GTYRAC 3 cut(s) 242, 390, 786
HinfI GANTC 7 cut(s) 31, 61, 214, 316, 445, 709, 876
HpaII CCGG 1 cut(s) 706
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 242, 390, 786
Hpy188I TCNGA 2 cut(s) 66, 213
Hpy188III TCNNGA 3 cut(s) 35, 98, 320
Hpy8I GTNNAC 3 cut(s) 242, 390, 786
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 565, 808
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 522, 549
HpyF3I CTNAG 3 cut(s) 210, 366, 433
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 5 cut(s) 185, 281, 316, 610, 883
HspAI GCGC 1 cut(s) 885
KasI GGCGCC 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 487, 525, 571, 842
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 4, 867, 874
MaeI CTAG 4 cut(s) 21, 98, 282, 833
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 4 cut(s) 177, 472, 667, 767
MalI GATC 4 cut(s) 489, 527, 573, 844
MboI GATC 4 cut(s) 487, 525, 571, 842
MboII GAAGA 4 cut(s) 335, 367, 416, 882
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 1 cut(s) 806
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 8 cut(s) 26, 39, 168, 416, 517, 612, 729, 847
MluNI TGGCCA 1 cut(s) 146
Mly113I GGCGCC 1 cut(s) 885
MlyI GAGTC 1 cut(s) 885
MmeI TCCRAC 3 cut(s) 30, 381, 757
MnlI CCTC 5 cut(s) 217, 514, 739, 754, 898
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 3 cut(s) 188, 297, 453
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 146
MspI CCGG 1 cut(s) 706
MunI CAATTG 1 cut(s) 612
NarI GGCGCC 1 cut(s) 885
NdeI CATATG 1 cut(s) 411
NdeII GATC 4 cut(s) 487, 525, 571, 842
NlaIII CATG 5 cut(s) 185, 281, 316, 610, 883
NlaIV GGNNCC 1 cut(s) 886
NmuCI GTSAC 1 cut(s) 472
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 6 cut(s) 31, 61, 214, 316, 445, 709
PflMI CCANNNNNTGG 2 cut(s) 617, 734
PkrI GCNGC 4 cut(s) 19, 857, 864, 867
PleI GAGTC 1 cut(s) 884
PluTI GGCGCC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 884
PshBI ATTAAT 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 886
PspPI GGNCC 1 cut(s) 703
PsuI RGATCY 1 cut(s) 842
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 188, 297, 453
SatI GCNGC 4 cut(s) 18, 856, 863, 866
Sau3AI GATC 4 cut(s) 487, 525, 571, 842
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 1 cut(s) 885
SduI GDGCHC 1 cut(s) 806
SetI ASST 7 cut(s) 19, 118, 222, 228, 247, 273, 860
SfoI GGCGCC 1 cut(s) 886
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 8 cut(s) 26, 39, 168, 416, 517, 612, 729, 847
SsiI CCGC 2 cut(s) 152, 866
SspDI GGCGCC 1 cut(s) 884
SspMI CTAG 4 cut(s) 21, 98, 282, 833
TaaI ACNGT 2 cut(s) 565, 808
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 423, 528
TasI AATT 8 cut(s) 26, 39, 168, 416, 517, 612, 729, 847
TatI WGTACW 1 cut(s) 362
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 6 cut(s) 31, 61, 214, 316, 445, 709
Tru1I TTAA 3 cut(s) 188, 297, 453
Tru9I TTAA 3 cut(s) 188, 297, 453
TscAI CASTG 3 cut(s) 154, 481, 811
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 17, 855, 862
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 206, 218, 293
TspRI CASTG 3 cut(s) 154, 481, 811
Van91I CCANNNNNTGG 2 cut(s) 617, 734
VpaK11BI GGWCC 1 cut(s) 703
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 2 cut(s) 39, 168
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 4 cut(s) 21, 98, 282, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.