RchiOBHm_Chr1g0357031

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011701
Physical Location & Seq
Reverse (-)
49426334 .. 49429185
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1482 bp
ATGAAAGACAACCCAAAAGACCCAGAAAACCTCTACTCAACATGGACCTTCCCAAAGGTAACAATATGCTTCCTCCTCTTGATCTCTTTCAGCTACATCTCTTACTCTATGAAATTTCTCCACCCATATTTATGTACCCAACAATCTCAATCACTTAATTTCCAATCCCATTTTTCCACACCCCAATCAGCTGATCCAAACCCACCAACGTCCCAAGAACACAAAACAAACATCTCCCACATCGTTTTTGGCATTGCAGCTTCAGCCGATCTCTGGCATCACAGAAAGAACTACATCAAGCTGTGGTGGAGACCAGACCAAATGAGAGGCCATGTTTGGCTAGACCAACCAGTAAAAACAGACCCCAAATCCAATCACACCCTTTTACCGCCGTTCAAAATCTCAGGCGACACTTCCGGCTTCAACTATACAAACCCAAAAGGCCACCACTCGGCTATAAGAATCTCCCGGATTGTTTCCGAGAGTTTCAGGCTGGGGATGAAGAATGTGAGGTGGTTTGTGCTGGGGGACGACGACACCGTTTTCGTGACCGAGAATCTGGTCAGGGTTTTGCAGAAGTATGATCATAACCAGTTTTACTATATCGGAGGATCGTCGGAGAGTCACTTGCAGAACATAAAGTTTTCGTATAATATGGCTTATGGTGGAGGTGGGATTGCTATAAGTTACTCTTTAGCAAAAGCCCTTGAGAAAATGCAGGACAGTTGTATTCAGAGGTATCCTGATTTGTACGGCTCCGATGATCGGCTTCAGGCTTGTATGGCTGAGATTGGTGTCCCTCTGACCAGAGAAAAAGGGTTTCATCAGTTTGATGTATATGGGAGCTTGTTCGGCCTCCTAGCAGCTCATCCAATCGCACCCCTAGTGTCACTACACCACCTAGATGTGGTTGAACCCATATTCCCGGATATGGATCGGATCCATGCCTTACAACGGCTCGAGGCTCCAACGAAGCTCGACTCAGCGGGGCTTGCGCAACAATCCATTTGCTACGATATCAATCGGTCCTGGACCATATCTGTTTCCTGGGGCTACGCAGTTCAAATATTTCAGGGTATTTCCTCGGCTCGAGAAATGGAACTGCCACTCAGGACCTTCCTCAATTGGTACAAGAGAGCTGATCATACTGCCTACACATTCAATACGGCCTCGGTCAATAGGCACGCATGTCAAGTACCGTTTGTATATTACTTATCTAATGCTTTCTACAATAGAACTACAAATCAAACAACCACCGAGTATGTTCAACATCAAACACGGATGCCAGAATGCAATTGGAAGATGGCAAATCCCTCCCGGATTCACAAAGTGCAAGTCCATAAATCCTCCGACGCGCATTTATGGGACAAGGCCCCGAGGAGAAATTGTTGCAGGGTATTCCGACCAGATAGCAAGAAGAAAGGCACCTTGGTCATTGAAGTAGGAGTATGCCATGAAGATGAAGTGGTCAAAGTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

493

Amino Acids

56.74

Weight (kDa)

8.82

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 152 - 276 4.6e-16 Fringe-like
DUF604 PF04646 211 - 464 1.2e-113 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01570 AT1G01570
fragaria_vesca FvH4_7g14990 FvH4_7g14990
prunus_persica Prupe.2G174500_v2.0.a1
pyrus_communis pycom01g09760
rosa_chinensis RchiOBHm_Chr1g0357031
rosa_laevigata RLG00000028059
rosa_multiflora Rmu_sc0000166.1_g000039 Rmu_sc0013980.1_g000025 Rmu_sc0035147.1_g000001
rosa_roxburghii Rroxscaffold_4G00299110
rosa_rugosa Rorug01G0253600 Rorug01G0253700
rosa_samantha Rh1AG267400 Rh1BG235200 Rh1CG251400 Rh1DG262600
rosa_wichuraiana Rw1G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 996
AccB1I GGYRCC 1 cut(s) 1424
AccII CGCG 1 cut(s) 1355
AciI CCGC 2 cut(s) 389, 986
AclWI GGATC 5 cut(s) 188, 619, 934, 942, 947
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 246, 755
AdeI CACNNNGTG 1 cut(s) 1330
AfaI GTAC 4 cut(s) 136, 752, 1130, 1197
AfiI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
AgsI TTSAA 7 cut(s) 397, 424, 914, 1064, 1162, 1268, 1439
AjnI CCWGG 2 cut(s) 1028, 1046
AjuI GAANNNNNNNTTGG 2 cut(s) 1412, 1444
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 8 cut(s) 93, 191, 260, 301, 846, 866, 976, 1139
AluI AGCT 8 cut(s) 93, 191, 260, 301, 846, 866, 976, 1139
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 5 cut(s) 188, 619, 934, 942, 947
Ama87I CYCGRG 3 cut(s) 959, 1089, 1375
AoxI GGCC 5 cut(s) 328, 442, 853, 1167, 1371
ApeKI GCWGC 2 cut(s) 257, 863
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 4 cut(s) 527, 559, 1320, 1352
AspLEI GCGC 2 cut(s) 997, 1357
AspS9I GGNCC 5 cut(s) 45, 1026, 1032, 1113, 1372
AsuC2I CCSGG 3 cut(s) 469, 926, 1318
AvaI CYCGRG 3 cut(s) 959, 1089, 1375
AvaII GGWCC 4 cut(s) 45, 1026, 1032, 1113
BamHI GGATCC 1 cut(s) 939
BanI GGYRCC 1 cut(s) 1424
BbvI GCAGC 2 cut(s) 269, 875
BccI CCATC 1 cut(s) 1297
BceAI ACGGC 4 cut(s) 376, 769, 971, 1182
BciT130I CCWGG 2 cut(s) 1030, 1048
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 2 cut(s) 583, 1141
BcnI CCSGG 3 cut(s) 469, 926, 1318
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 4 cut(s) 341, 860, 884, 902
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 2 cut(s) 258, 864
BlsI GCNGC 2 cut(s) 259, 865
Bme1390I CCNGG 5 cut(s) 469, 926, 1030, 1048, 1318
Bme18I GGWCC 4 cut(s) 45, 1026, 1032, 1113
BmeT110I CYCGRG 3 cut(s) 959, 1089, 1375
BmgT120I GGNCC 5 cut(s) 45, 1026, 1032, 1113, 1372
BmiI GGNNCC 5 cut(s) 757, 941, 966, 1374, 1426
BmrFI CCNGG 5 cut(s) 469, 926, 1030, 1048, 1318
BmsI GCATC 2 cut(s) 286, 1272
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 3 cut(s) 469, 926, 1318
BsaBI GATNNNNATC 2 cut(s) 933, 1020
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 5 cut(s) 1047, 1083, 1170, 1376, 1428
BsaXI ACNNNNNCTCC 2 cut(s) 1372, 1402
Bsc4I CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
Bse1I ACTGG 2 cut(s) 350, 592
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 2 cut(s) 933, 1020
BseBI CCWGG 2 cut(s) 1030, 1048
BseDI CCNNGG 5 cut(s) 1047, 1083, 1170, 1376, 1428
BseGI GGATG 3 cut(s) 504, 868, 1287
BseJI GATNNNNATC 2 cut(s) 933, 1020
BseLI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 4 cut(s) 417, 777, 996, 1123
BseNI ACTGG 2 cut(s) 350, 592
BseRI GAGGAG 2 cut(s) 65, 1393
BseXI GCAGC 2 cut(s) 269, 875
BseYI CCCAGC 2 cut(s) 493, 523
Bsh1236I CGCG 1 cut(s) 1355
BshFI GGCC 5 cut(s) 330, 444, 855, 1169, 1373
BshNI GGYRCC 1 cut(s) 1424
BsiHKCI CYCGRG 3 cut(s) 959, 1089, 1375
BsiSI CCGG 4 cut(s) 417, 469, 926, 1318
BslFI GGGAC 4 cut(s) 196, 542, 782, 1379
BslI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 4 cut(s) 196, 542, 782, 1379
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 5 cut(s) 330, 444, 855, 1169, 1373
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 3 cut(s) 959, 1089, 1375
Bsp143I GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
BspACI CCGC 2 cut(s) 389, 986
BspANI GGCC 5 cut(s) 330, 444, 855, 1169, 1373
BspCNI CTCAG 4 cut(s) 416, 778, 995, 1122
BspFNI CGCG 1 cut(s) 1355
BspLI GGNNCC 5 cut(s) 757, 941, 966, 1374, 1426
BspPI GGATC 5 cut(s) 188, 619, 934, 942, 947
BspT107I GGYRCC 1 cut(s) 1424
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 350, 592
BssECI CCNNGG 5 cut(s) 1047, 1083, 1170, 1376, 1428
BssMI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
BssT1I CCWWGG 1 cut(s) 1428
Bst2UI CCWGG 2 cut(s) 1030, 1048
Bst4CI ACNGT 3 cut(s) 541, 725, 1200
BstC8I GCNNGC 2 cut(s) 993, 1185
BstDEI CTNAG 4 cut(s) 403, 786, 982, 1109
BstF5I GGATG 3 cut(s) 504, 868, 1287
BstFNI CGCG 1 cut(s) 1355
BstHHI GCGC 2 cut(s) 997, 1357
BstKTI GATC 9 cut(s) 84, 196, 271, 586, 614, 766, 937, 942, 1144
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
BstNI CCWGG 2 cut(s) 1030, 1048
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 5 cut(s) 467, 924, 1028, 1046, 1316
BstUI CGCG 1 cut(s) 1355
BstV1I GCAGC 2 cut(s) 269, 875
BstX2I RGATCY 1 cut(s) 939
BstYI RGATCY 1 cut(s) 939
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 5 cut(s) 330, 444, 855, 1169, 1373
BtsCI GGATG 3 cut(s) 504, 868, 1287
Cac8I GCNNGC 2 cut(s) 993, 1185
CfoI GCGC 2 cut(s) 997, 1357
Cfr13I GGNCC 5 cut(s) 45, 1026, 1032, 1113, 1372
CseI GACGC 1 cut(s) 1361
Csp6I GTAC 4 cut(s) 135, 751, 1129, 1196
CviAII CATG 5 cut(s) 42, 332, 944, 1188, 1454
CviQI GTAC 4 cut(s) 135, 751, 1129, 1196
DdeI CTNAG 4 cut(s) 403, 786, 982, 1109
DpnI GATC 9 cut(s) 83, 195, 270, 585, 613, 765, 936, 941, 1143
DpnII GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
DraIII CACNNNGTG 1 cut(s) 1330
Eco130I CCWWGG 1 cut(s) 1428
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 45, 1026, 1032, 1113
Eco57I CTGAAG 2 cut(s) 246, 755
Eco88I CYCGRG 3 cut(s) 959, 1089, 1375
EcoO109I RGGNCCY 2 cut(s) 1113, 1372
EcoRII CCWGG 2 cut(s) 1028, 1046
EcoRV GATATC 1 cut(s) 1018
EcoT14I CCWWGG 1 cut(s) 1428
ErhI CCWWGG 1 cut(s) 1428
FaeI CATG 5 cut(s) 45, 335, 947, 1191, 1457
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 4 cut(s) 196, 542, 782, 1379
FatI CATG 5 cut(s) 41, 331, 943, 1187, 1453
FauI CCCGC 1 cut(s) 979
FbaI TGATCA 2 cut(s) 583, 1141
Fnu4HI GCNGC 2 cut(s) 258, 864
FokI GGATG 3 cut(s) 511, 855, 1294
Fsp4HI GCNGC 2 cut(s) 258, 864
FspBI CTAG 4 cut(s) 341, 860, 884, 902
FspI TGCGCA 1 cut(s) 996
GlaI GCGC 2 cut(s) 996, 1356
GluI GCNGC 2 cut(s) 258, 864
GsaI CCCAGC 2 cut(s) 497, 527
HaeIII GGCC 5 cut(s) 330, 444, 855, 1169, 1373
HapII CCGG 4 cut(s) 417, 469, 926, 1318
HgaI GACGC 1 cut(s) 1361
HhaI GCGC 2 cut(s) 997, 1357
Hin1II CATG 5 cut(s) 45, 335, 947, 1191, 1457
Hin6I GCGC 2 cut(s) 995, 1355
HinP1I GCGC 2 cut(s) 995, 1355
HinfI GANTC 5 cut(s) 462, 556, 622, 980, 1321
HpaII CCGG 4 cut(s) 417, 469, 926, 1318
Hpy188I TCNGA 9 cut(s) 481, 608, 619, 735, 760, 804, 939, 1351, 1403
Hpy188III TCNNGA 5 cut(s) 79, 547, 743, 1091, 1111
Hpy99I CGWCG 3 cut(s) 536, 619, 1355
HpyAV CCTTC 2 cut(s) 58, 1126
HpyCH4III ACNGT 3 cut(s) 541, 725, 1200
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 7 cut(s) 257, 574, 631, 718, 1293, 1333, 1392
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
HpyF3I CTNAG 4 cut(s) 403, 786, 982, 1109
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 5 cut(s) 45, 335, 947, 1191, 1457
HspAI GCGC 2 cut(s) 995, 1355
Ksp22I TGATCA 2 cut(s) 583, 1141
Kzo9I GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
LmnI GCTCC 3 cut(s) 761, 843, 970
Lsp1109I GCAGC 2 cut(s) 269, 875
LweI GCATC 2 cut(s) 286, 1272
MaeI CTAG 4 cut(s) 341, 860, 884, 902
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 5 cut(s) 58, 547, 623, 686, 888
MalI GATC 9 cut(s) 83, 195, 270, 585, 613, 765, 936, 941, 1143
MboI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
MboII GAAGA 4 cut(s) 514, 1312, 1429, 1469
MfeI CAATTG 2 cut(s) 1123, 1294
MflI RGATCY 1 cut(s) 939
MluCI AATT 5 cut(s) 113, 157, 1123, 1294, 1384
MlyI GAGTC 2 cut(s) 631, 974
MmeI TCCRAC 4 cut(s) 597, 992, 1374, 1426
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 3 cut(s) 130, 903, 1458
MspA1I CMGCKG 2 cut(s) 191, 986
MspI CCGG 4 cut(s) 417, 469, 926, 1318
MspR9I CCNGG 5 cut(s) 469, 926, 1030, 1048, 1318
MunI CAATTG 2 cut(s) 1123, 1294
Mva1269I GAATGC 1 cut(s) 1295
MvaI CCWGG 2 cut(s) 1030, 1048
MvnI CGCG 1 cut(s) 1355
MwoI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
NciI CCSGG 3 cut(s) 469, 926, 1318
NdeII GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
NlaIII CATG 5 cut(s) 45, 335, 947, 1191, 1457
NlaIV GGNNCC 5 cut(s) 757, 941, 966, 1374, 1426
NmeAIII GCCGAG 2 cut(s) 431, 1064
NmuCI GTSAC 3 cut(s) 547, 623, 888
NsbI TGCGCA 1 cut(s) 996
NspI RCATGY 1 cut(s) 1191
PaeR7I CTCGAG 2 cut(s) 959, 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 1295
PfeI GAWTC 3 cut(s) 462, 556, 1321
PfoI TCCNGGA 4 cut(s) 467, 924, 1028, 1316
PkrI GCNGC 2 cut(s) 259, 865
PleI GAGTC 2 cut(s) 630, 974
PpsI GAGTC 2 cut(s) 630, 974
PpuMI RGGWCCY 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 1028, 1046
PspFI CCCAGC 2 cut(s) 493, 523
PspGI CCWGG 2 cut(s) 1028, 1046
PspN4I GGNNCC 5 cut(s) 757, 941, 966, 1374, 1426
PspPI GGNCC 5 cut(s) 45, 1026, 1032, 1113, 1372
PspPPI RGGWCCY 1 cut(s) 1113
PspXI VCTCGAGB 1 cut(s) 959
PsuI RGATCY 1 cut(s) 939
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 4 cut(s) 136, 752, 1130, 1197
RsaNI GTAC 4 cut(s) 135, 751, 1129, 1196
RseI CAYNNNNRTG 3 cut(s) 130, 903, 1458
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 258, 864
Sau3AI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
Sau96I GGNCC 5 cut(s) 45, 1026, 1032, 1113, 1372
SchI GAGTC 2 cut(s) 631, 974
ScrFI CCNGG 5 cut(s) 469, 926, 1030, 1048, 1318
SfaNI GCATC 2 cut(s) 286, 1272
Sfr274I CTCGAG 2 cut(s) 959, 1089
SinI GGWCC 4 cut(s) 45, 1026, 1032, 1113
SlaI CTCGAG 2 cut(s) 959, 1089
SmiMI CAYNNNNRTG 3 cut(s) 130, 903, 1458
SmlI CTYRAG 3 cut(s) 707, 959, 1089
SmoI CTYRAG 3 cut(s) 707, 959, 1089
Sse9I AATT 5 cut(s) 113, 157, 1123, 1294, 1384
SsiI CCGC 2 cut(s) 389, 986
SspI AATATT 1 cut(s) 1068
SspMI CTAG 4 cut(s) 341, 860, 884, 902
StyD4I CCNGG 5 cut(s) 467, 924, 1028, 1046, 1316
StyI CCWWGG 1 cut(s) 1428
TaaI ACNGT 3 cut(s) 541, 725, 1200
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 960, 978, 1090
TaqII GACCGA 3 cut(s) 566, 1014, 1162
TasI AATT 5 cut(s) 113, 157, 1123, 1294, 1384
TfiI GAWTC 3 cut(s) 462, 556, 1321
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 3 cut(s) 547, 623, 888
TseI GCWGC 2 cut(s) 257, 863
Tsp45I GTSAC 3 cut(s) 547, 623, 888
TspDTI ATGAA 6 cut(s) 17, 125, 515, 812, 1470, 1476
TspGWI ACGGA 1 cut(s) 1294
VpaK11BI GGWCC 4 cut(s) 45, 1026, 1032, 1113
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 1293
XhoI CTCGAG 2 cut(s) 959, 1089
XspI CTAG 4 cut(s) 341, 860, 884, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.