RchiOBHm_Chr1g0359471

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017387
Physical Location & Seq
Reverse (-)
51443634 .. 51444359
726 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGAACCATATTAATTATAAAATTATTGATCACATTTCCAACTCCAATTTCATTTATCTTCAGTGCAATGATCGCAGAAGACAATGCGACTCAGTGAAGTTAACACAAGAGCCAGGGAGCAATGAATTCGTGTCAGCCTTGGCAGCAGGCATGAAAGCCAAGCTCATAGTGGAGGTGACATCAAGTGCTTCCCCATCAACAATTGCCTTGGCAGCTGCTGCAAAACACACCGGAGGCAAATTGGTTTGCATCCTTCCGGAGCCAGATCTAGCTGAATCGAAGAAAGTTATCAAAGACTCAGGCCTAAAAGACTTGGTAGAATTCAAGACAGGTGACCCTTTTGAGCTATTGACGAATTACGAGAACATTGATTTCTCTCTGGTTGATTGCAAGAATGATGAGTACACAGGGTTGCTGAAGTTGCTGGATGTTAATCCGAGAAAATCAGTGGTTGTGGCTACTAACTTGGTTGGGGAAAGAAAAGGATTCGAAGGACATGTGAAGGGAGTGAAGGAGGAGAGGGTTGTCGTGAGGTCTATGAAGCATCCCATTGGAAAAGGTATGGAGGTCACCATGATCGGAAAGGAAGATTGGGGCGGTGGAAGAGTTTCGAATGAAGCAGAAAAAAGAGGTGGTTTCAAGAAGAGGAATGGTAATAAGAGCAAATGGCTTGTCAAGGTTGATGAGAAGAGTGGTGAGGAACATATCTTTAGGATTCGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

241

Amino Acids

26.67

Weight (kDa)

9.02

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 31 - 238 8.5e-29 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 1 cut(s) 597
AcsI RAATTY 2 cut(s) 125, 320
AcuI CTGAAG 2 cut(s) 44, 437
AfaI GTAC 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 2 cut(s) 325, 640
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 574, 606
AluBI AGCT 4 cut(s) 163, 215, 272, 346
AluI AGCT 4 cut(s) 163, 215, 272, 346
AlwNI CAGNNNCTG 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 4 cut(s) 143, 212, 215, 218
ApoI RAATTY 2 cut(s) 125, 320
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 607
AsuHPI GGTGA 4 cut(s) 187, 344, 562, 707
AsuII TTCGAA 2 cut(s) 489, 611
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 155, 202, 205, 224
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 28
BfaI CTAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 265
BisI GCNGC 4 cut(s) 144, 213, 216, 219
BlsI GCNGC 4 cut(s) 145, 214, 217, 220
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 258, 553
BpiI GAAGAC 1 cut(s) 85
Bpu14I TTCGAA 2 cut(s) 489, 611
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 3 cut(s) 113, 138, 207
BsaWI WCCGGW 2 cut(s) 230, 256
Bse3DI GCAATG 2 cut(s) 73, 127
Bse8I GATNNNNATC 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 113, 138, 207
BseGI GGATG 3 cut(s) 249, 433, 544
BseJI GATNNNNATC 1 cut(s) 432
BseMI GCAATG 2 cut(s) 73, 127
BseMII CTCAG 2 cut(s) 105, 312
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 4 cut(s) 155, 202, 205, 224
BshFI GGCC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 231, 257
BsnI GGCC 1 cut(s) 303
Bsp119I TTCGAA 2 cut(s) 489, 611
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 4 cut(s) 28, 70, 265, 576
BspACI CCGC 1 cut(s) 597
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 104, 311
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 261
BspT104I TTCGAA 2 cut(s) 489, 611
BsrDI GCAATG 2 cut(s) 73, 127
BssECI CCNNGG 3 cut(s) 113, 138, 207
BssMI GATC 4 cut(s) 28, 70, 265, 576
BssT1I CCWWGG 2 cut(s) 138, 207
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 3 cut(s) 598, 638, 683
BstAPI GCANNNNNTGC 1 cut(s) 218
BstBI TTCGAA 2 cut(s) 489, 611
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 91, 298
BstEII GGTNACC 2 cut(s) 332, 568
BstF5I GGATG 3 cut(s) 249, 433, 544
BstKTI GATC 4 cut(s) 31, 73, 268, 579
BstMBI GATC 4 cut(s) 28, 70, 265, 576
BstMWI GCNNNNNNNGC 5 cut(s) 72, 143, 212, 218, 421
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 500
BstPI GGTNACC 2 cut(s) 332, 568
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 4 cut(s) 155, 202, 205, 224
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 249, 433, 544
BtsIMutI CAGTG 3 cut(s) 68, 99, 453
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 218
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 151, 497, 574
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 91, 298
DpnI GATC 4 cut(s) 30, 72, 267, 578
DpnII GATC 4 cut(s) 28, 70, 265, 576
Eam1104I CTCTTC 3 cut(s) 598, 638, 683
EarI CTCTTC 3 cut(s) 598, 638, 683
Eco130I CCWWGG 2 cut(s) 138, 207
Eco147I AGGCCT 1 cut(s) 303
Eco57I CTGAAG 2 cut(s) 44, 437
Eco91I GGTNACC 2 cut(s) 332, 568
EcoO65I GGTNACC 2 cut(s) 332, 568
EcoRI GAATTC 2 cut(s) 125, 320
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 138, 207
ErhI CCWWGG 2 cut(s) 138, 207
FaeI CATG 3 cut(s) 154, 500, 577
FaiI YATR 9 cut(s) 9, 18, 152, 167, 498, 539, 563, 575, 705
FatI CATG 3 cut(s) 150, 496, 573
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 144, 213, 216, 219
FokI GGATG 3 cut(s) 236, 440, 531
Fsp4HI GCNGC 4 cut(s) 144, 213, 216, 219
FspBI CTAG 1 cut(s) 269
GluI GCNGC 4 cut(s) 144, 213, 216, 219
HaeIII GGCC 1 cut(s) 303
HapII CCGG 2 cut(s) 231, 257
Hin1II CATG 3 cut(s) 154, 500, 577
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 5 cut(s) 89, 275, 296, 486, 715
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 2 cut(s) 231, 257
HphI GGTGA 4 cut(s) 187, 344, 562, 707
Hpy166II GTNNAC 2 cut(s) 102, 405
Hpy188I TCNGA 2 cut(s) 438, 581
Hpy188III TCNNGA 4 cut(s) 257, 325, 529, 640
Hpy8I GTNNAC 2 cut(s) 102, 405
HpyAV CCTTC 4 cut(s) 263, 485, 496, 505
HpyCH4V TGCA 4 cut(s) 66, 221, 249, 390
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 143, 212, 218, 421
HpyF3I CTNAG 2 cut(s) 91, 298
Hsp92II CATG 3 cut(s) 154, 500, 577
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 28
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 4 cut(s) 28, 70, 265, 576
LmnI GCTCC 2 cut(s) 117, 259
Lsp1109I GCAGC 4 cut(s) 155, 202, 205, 224
LweI GCATC 2 cut(s) 258, 553
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 3 cut(s) 175, 332, 568
MalI GATC 4 cut(s) 30, 72, 267, 578
MboI GATC 4 cut(s) 28, 70, 265, 576
MboII GAAGA 7 cut(s) 50, 90, 292, 599, 615, 655, 700
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 265
MluCI AATT 8 cut(s) 13, 21, 46, 125, 201, 239, 320, 355
MlyI GAGTC 2 cut(s) 83, 290
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 9 cut(s) 166, 227, 508, 513, 525, 559, 623, 639, 691
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 3 cut(s) 12, 101, 432
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 231, 257
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 72, 143, 212, 218, 421
NdeII GATC 4 cut(s) 28, 70, 265, 576
NlaIII CATG 3 cut(s) 154, 500, 577
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 3 cut(s) 175, 332, 568
NspI RCATGY 1 cut(s) 500
NspV TTCGAA 2 cut(s) 489, 611
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 275, 486, 715
PkrI GCNGC 4 cut(s) 145, 214, 217, 220
PleI GAGTC 2 cut(s) 83, 290
PpsI GAGTC 2 cut(s) 83, 290
PscI ACATGT 1 cut(s) 496
PshBI ATTAAT 1 cut(s) 12
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 112
PspEI GGTNACC 2 cut(s) 332, 568
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 12, 101, 432
SatI GCNGC 4 cut(s) 144, 213, 216, 219
Sau3AI GATC 4 cut(s) 28, 70, 265, 576
SchI GAGTC 2 cut(s) 83, 290
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 2 cut(s) 258, 553
SfuI TTCGAA 2 cut(s) 489, 611
Sse9I AATT 8 cut(s) 13, 21, 46, 125, 201, 239, 320, 355
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 1 cut(s) 597
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 138, 207
TaqI TCGA 3 cut(s) 278, 489, 611
TasI AATT 8 cut(s) 13, 21, 46, 125, 201, 239, 320, 355
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 3 cut(s) 275, 486, 715
Tru1I TTAA 3 cut(s) 12, 101, 432
Tru9I TTAA 3 cut(s) 12, 101, 432
TscAI CASTG 3 cut(s) 68, 99, 453
TseFI GTSAC 3 cut(s) 175, 332, 568
TseI GCWGC 4 cut(s) 143, 212, 215, 218
Tsp45I GTSAC 3 cut(s) 175, 332, 568
TspDTI ATGAA 6 cut(s) 17, 40, 138, 167, 554, 630
TspRI CASTG 3 cut(s) 68, 99, 453
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 2 cut(s) 125, 320
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.