Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Reverse (-)

51774261 .. 51776454

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGATTTACATACCTCTCCTGTGTCTTTTATTATTGCAGCCACAATTGCTAGTATCATATACCAATTGGTGAAGTGGAGATTTGGGCCAAAAACAGAGCAGGTTTTTCCTCCCGGGCCAGCAAGATTGCCGGTGTTGGGAAACCTACTGCAGTTGGGCCCTCTACCCCACAGAGACATGGCATCTTTATGCGACAAGTATGGGCCGTTGGTCTACCTACGACTTGGGAGCATTGATGCCATCACCACCAACGACCCCTACATCATACGTGAAATACTTATTCGACAAGATGACGTCTTTGCATCACGGCCGCGAACTTTGGCCGCAGTGCATTTGGCCTATGGTTGTGGCGACGTTGCGCTTGCCCCATTGGGCCCACAATGGAAGCGAATGAGGCGAATATGCATGGAACACTTGCTAACAACAAAACGCCTTGAGTCTTTTGCCAAACACCGAGCCGATGAAGCCCAACACCTCGTACAAGATGTTTGGGCCATGGCCCAGACGGGGAAGGTAGTGAACTTGAGGGAAGTGTTGGGTGGGTGGTCTATGAACAATGTGACTAGGATGTTGCTTGGTAAACAATATTTTGGGGCCGGGTCGGCAGGTCCACAAGAGGCCATGGAGTTCATGCACATAACCCATGAGTTATTTTGGCTGTTGGGGTTGATATATTTGGGAGATTACTTGCCAATTTGGAGGTGGGTGGATCCTTACGGTTGTGAGAAGAAAATGAGGGAAGTGGAGAAAAGGGTAGATGATTTTCATACCAAGATTCTTGAAGAGCATAGGAGGGTAAGTGAGGAGAAGAGCAAGCCAACTGGAGGAGAGGAAGATGGGGCAGAAATGGACTTTGTTGATGTTTTGTTGTCTTTGCCGGGTGAGGATGGGAAAAAGCATATGGAGGATGTGGAAATCAAAGCTCTAATACAGGATATGATAGCTGCTGCCACAGACACTTCAGCTGTGACCAACGAATGGGCGATGGCCGAGGTGATCAAGCATCCACGTATCCTCTGTAAAATCCAAGAAGAGCTTGATTTAGTCGTGGGTCAACATAGAATGGTCAACGAATCAGACCTACCCCATCTTAACTACCTACGCTGCGTCGTACGCGAAACCTTCCGCATGCATCCGGCGGGACCCTTCCTCATTCCGCACGAGTCATTACGCGCCACGTGGATCAACGGTTACTACATCCCGGCCAAGACACGTGTCTTCATCAACACCCATGGGCTGGGCCGAAACACAAAGCTATGGGACAATGTCGAGGAGTTTAGGCCTGAGCGGCATTGGCTCGATGATGGGAGCCGAGTCGAGATTAGCCATGGAGTCGATTTCAAAATTCTTCCTTTTAGTGCAGGAAAGAGAAAGTGTCCCGGCGCGCCGCTTGGGGTGACTCTAGTCTTGATGGCTTTGGCTCGACTTTTTCATTGTTTTAACTGGACACCACCGGAGGGTTTGAGGCCGGAAGATATTGATACCAAAGAGGTTTATGGAATGACAATGCCTAAGGTTCTACCCTTGATGGCTGTTGCTACTCCTCGCTTGGCAAACCATATGTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

523

Amino Acids

59.48

Weight (kDa)

6.63

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 504	1.8e-90	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
Acc36I	ACCTGC	2 cut(s)	91, 596
AccB7I	CCANNNNNTGG	2 cut(s)	978, 1237
AccBSI	CCGCTC	1 cut(s)	1288
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	4 cut(s)	313, 1116, 1173, 1385
AciI	CCGC	7 cut(s)	311, 324, 1126, 1139, 1157, 1288, 1388
AclWI	GGATC	3 cut(s)	704, 717, 1190
AcoI	YGGCCR	4 cut(s)	308, 321, 987, 1203
AcsI	RAATTY	1 cut(s)	1344
AcuI	CTGAAG	1 cut(s)	945
AcvI	CACGTG	2 cut(s)	1179, 1214
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	480, 1113
AfiI	CCNNNNNNNGG	6 cut(s)	137, 507, 824, 978, 1237, 1457
AflIII	ACRYGT	2 cut(s)	1211, 1213
AgsI	TTSAA	2 cut(s)	782, 1342
AluBI	AGCT	5 cut(s)	923, 944, 965, 1036, 1255
AluI	AGCT	5 cut(s)	923, 944, 965, 1036, 1255
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	704, 717, 1190
Ama87I	CYCGRG	1 cut(s)	113
ApaI	GGGCCC	2 cut(s)	161, 377
ApeKI	GCWGC	4 cut(s)	38, 944, 947, 1104
ApoI	RAATTY	1 cut(s)	1344
AscI	GGCGCGCC	1 cut(s)	1383
AspLEI	GCGC	4 cut(s)	361, 1175, 1385, 1387
AsuC2I	CCSGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
AsuHPI	GGTGA	5 cut(s)	82, 235, 893, 1006, 1408
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	608, 1142
AxyI	CCTNAGG	1 cut(s)	1512
BaeGI	GKGCMC	2 cut(s)	161, 377
BamHI	GGATCC	1 cut(s)	709
BanII	GRGCYC	2 cut(s)	161, 377
BauI	CACGAG	1 cut(s)	1160
BbrPI	CACGTG	2 cut(s)	1179, 1214
BbsI	GAAGAC	1 cut(s)	1210
BbvI	GCAGC	4 cut(s)	50, 931, 934, 1091
BccI	CCATC	8 cut(s)	248, 830, 881, 979, 1095, 1298, 1405, 1522
BceAI	ACGGC	2 cut(s)	190, 323
BciVI	GTATCC	1 cut(s)	1022
BclI	TGATCA	1 cut(s)	996
BcnI	CCSGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	3 cut(s)	51, 564, 1403
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	2 cut(s)	91, 596
BfuI	GTATCC	1 cut(s)	1022
BglI	GCCNNNNNGGC	2 cut(s)	602, 1288
BisI	GCNGC	8 cut(s)	39, 311, 324, 945, 948, 1105, 1289, 1388
BlsI	GCNGC	8 cut(s)	40, 312, 325, 946, 949, 1106, 1290, 1389
Bme1390I	CCNGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
Bme18I	GGWCC	2 cut(s)	608, 1142
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	7 cut(s)	159, 375, 595, 711, 1143, 1144, 1310
BmrFI	CCNGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
BmsI	GCATC	5 cut(s)	191, 226, 311, 1012, 1141
BoxI	GACNNNNGTC	2 cut(s)	1214, 1403
BpiI	GAAGAC	1 cut(s)	1210
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	2 cut(s)	455, 544
BpuMI	CCSGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
BsaAI	YACGTR	4 cut(s)	269, 1010, 1179, 1214
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	6 cut(s)	113, 495, 621, 990, 1231, 1327
BsaWI	WCCGGW	1 cut(s)	1453
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 507, 824, 978, 1237, 1457
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	826, 1448
Bse21I	CCTNAGG	1 cut(s)	1512
BseDI	CCNNGG	6 cut(s)	113, 495, 621, 990, 1231, 1327
BseGI	GGATG	6 cut(s)	573, 892, 913, 1003, 1132, 1197
BseLI	CCNNNNNNNGG	6 cut(s)	137, 507, 824, 978, 1237, 1457
BseMII	CTCAG	1 cut(s)	1275
BseNI	ACTGG	2 cut(s)	826, 1448
BsePI	GCGCGC	1 cut(s)	1383
BseRI	GAGGAG	4 cut(s)	818, 840, 1286, 1533
BseSI	GKGCMC	2 cut(s)	161, 377
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	50, 931, 934, 1091
BseYI	CCCAGC	1 cut(s)	1237
BsgI	GTGCAG	1 cut(s)	1380
Bsh1236I	CGCG	4 cut(s)	313, 1116, 1173, 1385
Bsh1285I	CGRYCG	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	9 cut(s)	114, 131, 597, 878, 1136, 1202, 1380, 1454, 1469
BsiWI	CGTACG	1 cut(s)	1111
BslFI	GGGAC	3 cut(s)	1155, 1274, 1362
BslI	CCNNNNNNNGG	6 cut(s)	137, 507, 824, 978, 1237, 1457
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	3 cut(s)	1155, 1274, 1362
BsoBI	CYCGRG	1 cut(s)	113
Bsp120I	GGGCCC	2 cut(s)	157, 373
Bsp1286I	GDGCHC	2 cut(s)	161, 377
Bsp143I	GATC	3 cut(s)	709, 996, 1182
Bsp19I	CCATGG	4 cut(s)	495, 621, 1231, 1327
BspACI	CCGC	7 cut(s)	311, 324, 1126, 1139, 1157, 1288, 1388
BspCNI	CTCAG	1 cut(s)	1276
BspFNI	CGCG	4 cut(s)	313, 1116, 1173, 1385
BspLI	GGNNCC	7 cut(s)	159, 375, 595, 711, 1143, 1144, 1310
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	2 cut(s)	91, 596
BspPI	GGATC	3 cut(s)	704, 717, 1190
BspQI	GCTCTTC	3 cut(s)	777, 803, 1026
BsrBI	CCGCTC	1 cut(s)	1288
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	826, 1448
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	6 cut(s)	113, 495, 621, 990, 1231, 1327
BssHII	GCGCGC	1 cut(s)	1383
BssMI	GATC	3 cut(s)	709, 996, 1182
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	1160
BssT1I	CCWWGG	4 cut(s)	495, 621, 1231, 1327
Bst2BI	CACGAG	1 cut(s)	1160
Bst4CI	ACNGT	2 cut(s)	719, 1190
Bst6I	CTCTTC	3 cut(s)	777, 803, 1026
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	4 cut(s)	269, 1010, 1179, 1214
BstC8I	GCNNGC	5 cut(s)	120, 363, 815, 1130, 1385
BstDEI	CTNAG	2 cut(s)	1284, 1512
BstDSI	CCRYGG	4 cut(s)	495, 621, 1231, 1327
BstF5I	GGATG	6 cut(s)	573, 892, 913, 1003, 1132, 1197
BstFNI	CGCG	4 cut(s)	313, 1116, 1173, 1385
BstHHI	GCGC	4 cut(s)	361, 1175, 1385, 1387
BstKTI	GATC	3 cut(s)	712, 999, 1185
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	709, 996, 1182
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 394, 464, 602, 1113, 1288, 1294
BstNSI	RCATGY	1 cut(s)	1132
BstPAI	GACNNNNGTC	2 cut(s)	1214, 1403
BstSCI	CCNGG	6 cut(s)	112, 113, 596, 877, 1200, 1378
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	2 cut(s)	161, 377
BstUI	CGCG	4 cut(s)	313, 1116, 1173, 1385
BstV1I	GCAGC	4 cut(s)	50, 931, 934, 1091
BstV2I	GAAGAC	1 cut(s)	1210
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BstZI	CGGCCG	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	1512
BsuI	GTATCC	1 cut(s)	1022
BtgI	CCRYGG	4 cut(s)	495, 621, 1231, 1327
BtgZI	GCGATG	1 cut(s)	998
BtsCI	GGATG	6 cut(s)	573, 892, 913, 1003, 1132, 1197
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	2 cut(s)	91, 596
Cac8I	GCNNGC	5 cut(s)	120, 363, 815, 1130, 1385
CfoI	GCGC	4 cut(s)	361, 1175, 1385, 1387
Cfr10I	RCCGGY	1 cut(s)	130
Cfr9I	CCCGGG	1 cut(s)	113
CseI	GACGC	1 cut(s)	1096
Csp6I	GTAC	2 cut(s)	479, 1112
CviAII	CATG	9 cut(s)	178, 406, 496, 622, 631, 644, 1129, 1232, 1328
CviQI	GTAC	2 cut(s)	479, 1112
DdeI	CTNAG	2 cut(s)	1284, 1512
DpnI	GATC	3 cut(s)	711, 998, 1184
DpnII	GATC	3 cut(s)	709, 996, 1182
EaeI	YGGCCR	4 cut(s)	308, 321, 987, 1203
EagI	CGGCCG	1 cut(s)	308
Eam1104I	CTCTTC	3 cut(s)	777, 803, 1026
EarI	CTCTTC	3 cut(s)	777, 803, 1026
EclXI	CGGCCG	1 cut(s)	308
Eco130I	CCWWGG	4 cut(s)	495, 621, 1231, 1327
Eco147I	AGGCCT	1 cut(s)	1282
Eco24I	GRGCYC	2 cut(s)	161, 377
Eco47I	GGWCC	2 cut(s)	608, 1142
Eco52I	CGGCCG	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	945
Eco72I	CACGTG	2 cut(s)	1179, 1214
Eco81I	CCTNAGG	1 cut(s)	1512
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	158, 1142
EcoT14I	CCWWGG	4 cut(s)	495, 621, 1231, 1327
EcoT22I	ATGCAT	2 cut(s)	407, 1134
EcoT38I	GRGCYC	2 cut(s)	161, 377
ErhI	CCWWGG	4 cut(s)	495, 621, 1231, 1327
FaeI	CATG	9 cut(s)	181, 409, 499, 625, 634, 647, 1132, 1235, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	3 cut(s)	1155, 1274, 1362
FatI	CATG	9 cut(s)	177, 405, 495, 621, 630, 643, 1128, 1231, 1327
FauI	CCCGC	1 cut(s)	1132
FauNDI	CATATG	2 cut(s)	900, 1560
FbaI	TGATCA	1 cut(s)	996
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	8 cut(s)	39, 311, 324, 945, 948, 1105, 1289, 1388
FokI	GGATG	6 cut(s)	580, 899, 920, 990, 1119, 1184
FriOI	GRGCYC	2 cut(s)	161, 377
Fsp4HI	GCNGC	8 cut(s)	39, 311, 324, 945, 948, 1105, 1289, 1388
FspBI	CTAG	3 cut(s)	51, 564, 1403
GlaI	GCGC	4 cut(s)	360, 1174, 1384, 1386
GluI	GCNGC	8 cut(s)	39, 311, 324, 945, 948, 1105, 1289, 1388
GsaI	CCCAGC	1 cut(s)	1241
GsuI	CTGGAG	1 cut(s)	843
HapII	CCGG	9 cut(s)	114, 131, 597, 878, 1136, 1202, 1380, 1454, 1469
HgaI	GACGC	1 cut(s)	1096
HhaI	GCGC	4 cut(s)	361, 1175, 1385, 1387
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	9 cut(s)	181, 409, 499, 625, 634, 647, 1132, 1235, 1331
Hin6I	GCGC	4 cut(s)	359, 1173, 1383, 1385
HinP1I	GCGC	4 cut(s)	359, 1173, 1383, 1385
HincII	GTYRAC	2 cut(s)	1055, 1069
HindII	GTYRAC	2 cut(s)	1055, 1069
HinfI	GANTC	7 cut(s)	437, 775, 1073, 1163, 1314, 1332, 1399
HpaII	CCGG	9 cut(s)	114, 131, 597, 878, 1136, 1202, 1380, 1454, 1469
HphI	GGTGA	5 cut(s)	82, 235, 893, 1006, 1408
Hpy166II	GTNNAC	6 cut(s)	214, 520, 581, 611, 1055, 1069
Hpy188I	TCNGA	1 cut(s)	1078
Hpy188III	TCNNGA	3 cut(s)	779, 1318, 1408
Hpy8I	GTNNAC	6 cut(s)	214, 520, 581, 611, 1055, 1069
Hpy99I	CGWCG	2 cut(s)	356, 1112
HpyAV	CCTTC	3 cut(s)	505, 1132, 1156
HpyCH4III	ACNGT	2 cut(s)	719, 1190
HpyCH4IV	ACGT	6 cut(s)	268, 294, 354, 1009, 1178, 1213
HpyCH4V	TGCA	8 cut(s)	38, 151, 302, 331, 405, 634, 1132, 1361
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 394, 464, 602, 1113, 1288, 1294
HpyF3I	CTNAG	2 cut(s)	1284, 1512
HpySE526I	ACGT	6 cut(s)	268, 294, 354, 1009, 1178, 1213
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	9 cut(s)	181, 409, 499, 625, 634, 647, 1132, 1235, 1331
HspAI	GCGC	4 cut(s)	359, 1173, 1383, 1385
KflI	GGGWCCC	1 cut(s)	1142
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	3 cut(s)	709, 996, 1182
LguI	GCTCTTC	3 cut(s)	777, 803, 1026
LmnI	GCTCC	2 cut(s)	228, 1308
Lsp1109I	GCAGC	4 cut(s)	50, 931, 934, 1091
LweI	GCATC	5 cut(s)	191, 226, 311, 1012, 1141
MaeI	CTAG	3 cut(s)	51, 564, 1403
MaeII	ACGT	6 cut(s)	268, 294, 354, 1009, 1178, 1213
MaeIII	GTNAC	4 cut(s)	559, 967, 1190, 1396
MalI	GATC	3 cut(s)	711, 998, 1184
MbiI	CCGCTC	1 cut(s)	1288
MboI	GATC	3 cut(s)	709, 996, 1182
MboII	GAAGA	8 cut(s)	739, 794, 820, 845, 1043, 1210, 1340, 1484
MfeI	CAATTG	2 cut(s)	45, 65
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	2 cut(s)	161, 377
MluCI	AATT	4 cut(s)	45, 65, 693, 1344
MlyI	GAGTC	5 cut(s)	446, 1172, 1323, 1341, 1393
Mph1103I	ATGCAT	2 cut(s)	407, 1134
MseI	TTAA	2 cut(s)	1092, 1440
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	9 cut(s)	114, 131, 597, 878, 1136, 1202, 1380, 1454, 1469
MspR9I	CCNGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
MunI	CAATTG	2 cut(s)	45, 65
MvnI	CGCG	4 cut(s)	313, 1116, 1173, 1385
MwoI	GCNNNNNNNGC	7 cut(s)	47, 394, 464, 602, 1113, 1288, 1294
NciI	CCSGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
NcoI	CCATGG	4 cut(s)	495, 621, 1231, 1327
NdeI	CATATG	2 cut(s)	900, 1560
NdeII	GATC	3 cut(s)	709, 996, 1182
NlaIII	CATG	9 cut(s)	181, 409, 499, 625, 634, 647, 1132, 1235, 1331
NlaIV	GGNNCC	7 cut(s)	159, 375, 595, 711, 1143, 1144, 1310
NmeAIII	GCCGAG	2 cut(s)	1015, 1337
NmuCI	GTSAC	3 cut(s)	559, 967, 1396
NsiI	ATGCAT	2 cut(s)	407, 1134
NspI	RCATGY	1 cut(s)	1132
PaeI	GCATGC	1 cut(s)	1132
PalAI	GGCGCGCC	1 cut(s)	1383
PauI	GCGCGC	1 cut(s)	1383
PceI	AGGCCT	1 cut(s)	1282
PciSI	GCTCTTC	3 cut(s)	777, 803, 1026
PfeI	GAWTC	2 cut(s)	775, 1073
Pfl23II	CGTACG	1 cut(s)	1111
PflFI	GACNNNGTC	1 cut(s)	1265
PflMI	CCANNNNNTGG	2 cut(s)	978, 1237
PkrI	GCNGC	8 cut(s)	40, 312, 325, 946, 949, 1106, 1290, 1389
PleI	GAGTC	5 cut(s)	445, 1171, 1322, 1340, 1393
PmaCI	CACGTG	2 cut(s)	1179, 1214
PmlI	CACGTG	2 cut(s)	1179, 1214
PpsI	GAGTC	5 cut(s)	445, 1171, 1322, 1340, 1393
Ppu21I	YACGTR	4 cut(s)	269, 1010, 1179, 1214
PpuMI	RGGWCCY	1 cut(s)	1142
PshAI	GACNNNNGTC	2 cut(s)	1214, 1403
Psp5II	RGGWCCY	1 cut(s)	1142
PspCI	CACGTG	2 cut(s)	1179, 1214
PspFI	CCCAGC	1 cut(s)	1237
PspLI	CGTACG	1 cut(s)	1111
PspN4I	GGNNCC	7 cut(s)	159, 375, 595, 711, 1143, 1144, 1310
PspOMI	GGGCCC	2 cut(s)	157, 373
PspPPI	RGGWCCY	1 cut(s)	1142
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	1265
PteI	GCGCGC	1 cut(s)	1383
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	2 cut(s)	480, 1113
RsaNI	GTAC	2 cut(s)	479, 1112
RseI	CAYNNNNRTG	1 cut(s)	187
SapI	GCTCTTC	3 cut(s)	777, 803, 1026
SaqAI	TTAA	2 cut(s)	1092, 1440
SatI	GCNGC	8 cut(s)	39, 311, 324, 945, 948, 1105, 1289, 1388
Sau3AI	GATC	3 cut(s)	709, 996, 1182
SchI	GAGTC	5 cut(s)	446, 1172, 1323, 1341, 1393
ScrFI	CCNGG	6 cut(s)	114, 115, 598, 879, 1202, 1380
SduI	GDGCHC	2 cut(s)	161, 377
SfaNI	GCATC	5 cut(s)	191, 226, 311, 1012, 1141
SfcI	CTRYAG	1 cut(s)	149
SgsI	GGCGCGCC	1 cut(s)	1383
SinI	GGWCC	2 cut(s)	608, 1142
SmaI	CCCGGG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	434, 523
SmoI	CTYRAG	2 cut(s)	434, 523
SphI	GCATGC	1 cut(s)	1132
Sse9I	AATT	4 cut(s)	45, 65, 693, 1344
SseBI	AGGCCT	1 cut(s)	1282
SsiI	CCGC	7 cut(s)	311, 324, 1126, 1139, 1157, 1288, 1388
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	3 cut(s)	51, 564, 1403
StuI	AGGCCT	1 cut(s)	1282
StyD4I	CCNGG	6 cut(s)	112, 113, 596, 877, 1200, 1378
StyI	CCWWGG	4 cut(s)	495, 621, 1231, 1327
TaaI	ACNGT	2 cut(s)	719, 1190
TaiI	ACGT	6 cut(s)	271, 297, 357, 1012, 1181, 1216
TaqI	TCGA	6 cut(s)	283, 1269, 1299, 1317, 1335, 1423
TasI	AATT	4 cut(s)	45, 65, 693, 1344
TauI	GCSGC	4 cut(s)	313, 326, 1291, 1390
TfiI	GAWTC	2 cut(s)	775, 1073
Tru1I	TTAA	2 cut(s)	1092, 1440
Tru9I	TTAA	2 cut(s)	1092, 1440
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	3 cut(s)	559, 967, 1396
TseI	GCWGC	4 cut(s)	38, 944, 947, 1104
Tsp45I	GTSAC	3 cut(s)	559, 967, 1396
TspDTI	ATGAA	6 cut(s)	477, 566, 619, 755, 1210, 1421
TspMI	CCCGGG	1 cut(s)	113
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	1 cut(s)	1265
Van91I	CCANNNNNTGG	2 cut(s)	978, 1237
VpaK11BI	GGWCC	2 cut(s)	608, 1142
XapI	RAATTY	1 cut(s)	1344
XceI	RCATGY	1 cut(s)	1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XmaI	CCCGGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	51, 564, 1403
ZraI	GACGTC	1 cut(s)	295
Zsp2I	ATGCAT	2 cut(s)	407, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.