Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Reverse (-)

51641333 .. 51641890

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG287600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGGAAAACTTGCTAACAACAAAACGCCTCGAGTCTTTTGCCAAACACCGAGCCGATGAAGCTCAACACCTCATACAAGATGTTTGGGCCACGGCACAGACGGGGAAGGTCGTGAACTTGAGGGAAGTGTTGGGTGGGTGGTCCATGAACAATGCGACTAGGATGTTGCTTGGGAAACAATATTTTGGGGCCGGGTCGGTAGGTCCACAAGAGGCCATGGAGTTCACGCACATAACCCATGATTTATTTTGGCTGTTGGGATTGATATATTTGGGAGATTACTTGCCAATTTGGAGGTGGGTGGATCCTTACGGTTGTGAGAAGAAAATGAGGGAAGTGGAGAAAAGGGTAGATGATTTTCATACCAAGATTGTTGAAGAGCATAGGAGGGTAAGGGAGGAGAAGAGCAAGCCAACTGGAGGAGAGGAAGATGGGGCAGAAATGGACTTTGTGGATATTTTGTTGTCTTTGCCAGGTGAGGATGGGAAAAAGCATATGGAGGATGTGGAAATCAAAGCTCTAATACAGCCAAACCTTTGCATAATTTCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

5.4

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 176	6.3e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	302, 315
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	2 cut(s)	65, 521
AluI	AGCT	2 cut(s)	65, 521
AlwI	GGATC	2 cut(s)	302, 315
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	90, 192, 216
AspS9I	GGNCC	4 cut(s)	90, 144, 192, 206
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	144, 206
BamHI	GGATCC	1 cut(s)	307
BccI	CCATC	2 cut(s)	428, 479
BceAI	ACGGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	2 cut(s)	162, 556
Bme1390I	CCNGG	2 cut(s)	196, 477
Bme18I	GGWCC	2 cut(s)	144, 206
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	4 cut(s)	90, 144, 192, 206
BmiI	GGNNCC	2 cut(s)	193, 309
BmrFI	CCNGG	2 cut(s)	196, 477
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	93, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	93, 219
BseGI	GGATG	3 cut(s)	171, 490, 511
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	2 cut(s)	416, 438
BshFI	GGCC	3 cut(s)	92, 194, 218
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	422
BsnI	GGCC	3 cut(s)	92, 194, 218
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	307, 552
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	3 cut(s)	92, 194, 218
BspLI	GGNNCC	2 cut(s)	193, 309
BspPI	GGATC	2 cut(s)	302, 315
BspQI	GCTCTTC	2 cut(s)	375, 401
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	93, 219
BssMI	GATC	2 cut(s)	307, 552
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	375, 401
BstC8I	GCNNGC	1 cut(s)	413
BstDSI	CCRYGG	2 cut(s)	93, 219
BstF5I	GGATG	3 cut(s)	171, 490, 511
BstKTI	GATC	2 cut(s)	310, 555
BstMBI	GATC	2 cut(s)	307, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	194, 475
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	92, 194, 218
BtgI	CCRYGG	2 cut(s)	93, 219
BtsCI	GGATG	3 cut(s)	171, 490, 511
Cac8I	GCNNGC	1 cut(s)	413
Cfr13I	GGNCC	4 cut(s)	90, 144, 192, 206
CviAII	CATG	3 cut(s)	148, 220, 242
CviJI	RGCY	9 cut(s)	56, 65, 92, 194, 218, 256, 415, 521, 532
CviKI_1	RGCY	9 cut(s)	56, 65, 92, 194, 218, 256, 415, 521, 532
DpnI	GATC	2 cut(s)	309, 554
DpnII	GATC	2 cut(s)	307, 552
Eam1104I	CTCTTC	2 cut(s)	375, 401
EarI	CTCTTC	2 cut(s)	375, 401
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	144, 206
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	151, 223, 245
FatI	CATG	3 cut(s)	147, 219, 241
FauNDI	CATATG	1 cut(s)	498
FokI	GGATG	3 cut(s)	178, 497, 518
FspBI	CTAG	2 cut(s)	162, 556
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	92, 194, 218
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	3 cut(s)	151, 223, 245
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	3 cut(s)	118, 209, 228
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	3 cut(s)	118, 209, 228
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	151, 223, 245
Kzo9I	GATC	2 cut(s)	307, 552
LguI	GCTCTTC	2 cut(s)	375, 401
LpnPI	CCDG	4 cut(s)	208, 405, 462, 489
MaeI	CTAG	2 cut(s)	162, 556
MalI	GATC	2 cut(s)	309, 554
MboI	GATC	2 cut(s)	307, 552
MboII	GAAGA	4 cut(s)	337, 392, 418, 443
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	2 cut(s)	291, 546
MlyI	GAGTC	1 cut(s)	44
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	196, 477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	307, 552
NlaIII	CATG	3 cut(s)	151, 223, 245
NlaIV	GGNNCC	2 cut(s)	193, 309
PaeR7I	CTCGAG	1 cut(s)	32
PciSI	GCTCTTC	2 cut(s)	375, 401
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	193, 309
PspPI	GGNCC	4 cut(s)	90, 144, 192, 206
PspXI	VCTCGAGB	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	307
SapI	GCTCTTC	2 cut(s)	375, 401
Sau3AI	GATC	2 cut(s)	307, 552
Sau96I	GGNCC	4 cut(s)	90, 144, 192, 206
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	196, 477
SetI	ASST	8 cut(s)	67, 75, 114, 208, 302, 481, 523, 540
Sfr274I	CTCGAG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	144, 206
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	32, 121
SmoI	CTYRAG	2 cut(s)	32, 121
Sse9I	AATT	2 cut(s)	291, 546
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	162, 556
StyD4I	CCNGG	2 cut(s)	194, 475
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	33, 551
TasI	AATT	2 cut(s)	291, 546
TspDTI	ATGAA	3 cut(s)	75, 164, 353
VpaK11BI	GGWCC	2 cut(s)	144, 206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	32
XspI	CTAG	2 cut(s)	162, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.