Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Forward (+)

16775493 .. 16782088

Gene Structure 6596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGTTCATGCACATAACCCATGAGTTATTTTGGCTGTTGGGGTTGATATATTTGGGAGATTACTTGCCAATTTGGAGGTGGGTGGATCCTTACGGTTGTGAGAAGAAAATGAGGGAAGTGGAGAAAAGGGTAGATTATTTTCATACCAAGATTCTTGAAGAGCATGGGAGGGTAAGGGAAGTGGAGCAAGCCATGCCAACTGGAGGAGAGGAAGATGGGGCAGAAATGGACTTTGTGGATATTTTGTTGTCTTTGCCAAGTGAGGATGGGAAAAAGCATATGAAGGATGTGGCACTAATTTATGTCGAAACCATCCTTCACTTTATCGAAATATCACATTTTGGCAGCAACCAATCTGTCCCTTATGGATCACCAGCCTTTCGATTGATTTCGGTTAAGGACCCAAGTTACAGCATTCTTGAAGAAATCCATGACCAGTTCTCAAAGCTCTCTATCAATAGTACATCCAAGGCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

160

Amino Acids

18.59

Weight (kDa)

5.1

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	83, 96, 379
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	161, 425
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
AlwI	GGATC	3 cut(s)	83, 96, 379
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	403, 475
AsuHPI	GGTGA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	3 cut(s)	212, 263, 323
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	403, 475
BmiI	GGNNCC	2 cut(s)	90, 405
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	208, 439
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	4 cut(s)	274, 295, 315, 467
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	208, 439
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	88, 371
BspANI	GGCC	1 cut(s)	476
BspLI	GGNNCC	2 cut(s)	90, 405
BspPI	GGATC	3 cut(s)	83, 96, 379
BspQI	GCTCTTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	208, 439
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	88, 371
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	4 cut(s)	274, 295, 315, 467
BstKTI	GATC	2 cut(s)	91, 374
BstMBI	GATC	2 cut(s)	88, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	4 cut(s)	274, 295, 315, 467
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	403, 475
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	5 cut(s)	10, 23, 167, 196, 434
CviJI	RGCY	5 cut(s)	37, 194, 380, 451, 476
CviKI_1	RGCY	5 cut(s)	37, 194, 380, 451, 476
CviQI	GTAC	1 cut(s)	465
DpnI	GATC	2 cut(s)	90, 373
DpnII	GATC	2 cut(s)	88, 371
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	13, 26, 170, 199, 437
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	5 cut(s)	9, 22, 166, 195, 433
FauNDI	CATATG	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	4 cut(s)	281, 302, 302, 454
Fsp4HI	GCNGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	476
Hin1II	CATG	5 cut(s)	13, 26, 170, 199, 437
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	366
Hpy188III	TCNNGA	2 cut(s)	158, 422
HpyAV	CCTTC	2 cut(s)	280, 329
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	13, 26, 170, 199, 437
Kzo9I	GATC	2 cut(s)	88, 371
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	3 cut(s)	189, 390, 452
Lsp1109I	GCAGC	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	90, 373
MboI	GATC	2 cut(s)	88, 371
MboII	GAAGA	4 cut(s)	118, 173, 227, 437
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	2 cut(s)	72, 300
MnlI	CCTC	6 cut(s)	72, 108, 165, 200, 205, 259
MseI	TTAA	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	2 cut(s)	88, 371
NlaIII	CATG	5 cut(s)	13, 26, 170, 199, 437
NlaIV	GGNNCC	2 cut(s)	90, 405
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	90, 405
PspPI	GGNCC	2 cut(s)	403, 475
PspPPI	RGGWCCY	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	2 cut(s)	88, 371
Sau96I	GGNCC	2 cut(s)	403, 475
SetI	ASST	2 cut(s)	83, 453
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	2 cut(s)	72, 300
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	309, 330, 385
TasI	AATT	2 cut(s)	72, 300
TatI	WGTACW	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	134, 299
VpaK11BI	GGWCC	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.