Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Forward (+)

16706191 .. 16706778

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCGAGGTGATCAAGCATCCACGTGTCCTCCGTAAGATCCAAGAAGAGCTCGATTCGGTCGTGGGTCAACATAGAATGGTCAACGAATCGACCTACCCCATCTTAACTACCTACGCTGCGTCGTACGCGAAACCTTCCGCATGCATCCGGCGGGACCCTTCCTCATTCCGCACGAGTCATTACGCGCCACGTGGATCAACGGTTACTACATCCCGGGCCAAGACACGTGTATTCATCAACACTCATGGGCTGGGCCGAAACACAAAGCTATGGGACAATGTCGAGGAGTTTAGGCCCGAGCGGCATTGGCTCGATGATGGGAGCCGAGTCGAGATTAGCCATGGAGTCGATTTCAAAATTCTTCCTTTTAGTGCAGGAAAGAGAAAGTGTCCCGGCGCGCCGCTTGGGGTGACTCTAGTCTTGATGGCTTTGGCTCGGCTTTTTCATTGTTTTAACTGGACACCAACGGAGGGTCTGAGGCCGGAAGATATTGATACCAAAGAGGTTTATGGAATGACAATGCCTAAGGTTCAACCCTTGATGGCTGTTGCTAGGCCTCGCTTGGTAAACCATATGTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

195

Amino Acids

22.21

Weight (kDa)

9.71

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	73 - 177	7.9e-19	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AccII	CGCG	3 cut(s)	131, 188, 401
AciI	CCGC	5 cut(s)	141, 154, 172, 304, 404
AclWI	GGATC	2 cut(s)	34, 205
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	360
AcvI	CACGTG	3 cut(s)	26, 194, 230
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	3 cut(s)	25, 227, 229
AgsI	TTSAA	2 cut(s)	358, 536
AluBI	AGCT	2 cut(s)	52, 271
AluI	AGCT	2 cut(s)	52, 271
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	34, 205
Ama87I	CYCGRG	2 cut(s)	216, 299
AoxI	GGCC	6 cut(s)	3, 219, 256, 296, 482, 557
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	360
AscI	GGCGCGCC	1 cut(s)	399
AspLEI	GCGC	3 cut(s)	190, 401, 403
AspS9I	GGNCC	4 cut(s)	157, 219, 256, 297
AsuC2I	CCSGG	3 cut(s)	217, 218, 396
AsuHPI	GGTGA	2 cut(s)	22, 424
AvaI	CYCGRG	2 cut(s)	216, 299
AvaII	GGWCC	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	175
BbrPI	CACGTG	3 cut(s)	26, 194, 230
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	110, 314, 421, 538
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	3 cut(s)	217, 218, 396
BfaI	CTAG	2 cut(s)	419, 555
BglI	GCCNNNNNGGC	1 cut(s)	304
BisI	GCNGC	3 cut(s)	120, 305, 404
BlsI	GCNGC	3 cut(s)	121, 306, 405
Bme1390I	CCNGG	3 cut(s)	217, 218, 396
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	216, 299
BmgT120I	GGNCC	4 cut(s)	157, 219, 256, 297
BmiI	GGNNCC	3 cut(s)	158, 159, 326
BmrFI	CCNGG	3 cut(s)	217, 218, 396
BmsI	GCATC	2 cut(s)	28, 156
BoxI	GACNNNNGTC	1 cut(s)	419
BpuMI	CCSGG	3 cut(s)	217, 218, 396
BsaAI	YACGTR	3 cut(s)	26, 194, 230
BsaJI	CCNNGG	3 cut(s)	6, 216, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	464
Bse21I	CCTNAGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	6, 216, 343
BseGI	GGATG	3 cut(s)	19, 147, 212
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	464
BsePI	GCGCGC	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	3 cut(s)	131, 188, 401
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	6 cut(s)	5, 221, 258, 298, 484, 559
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	2 cut(s)	216, 299
BsiSI	CCGG	4 cut(s)	151, 217, 396, 485
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	3 cut(s)	170, 290, 378
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmFI	GGGAC	3 cut(s)	170, 290, 378
BsnI	GGCC	6 cut(s)	5, 221, 258, 298, 484, 559
BsoBI	CYCGRG	2 cut(s)	216, 299
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	12, 39, 197
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	5 cut(s)	141, 154, 172, 304, 404
BspANI	GGCC	6 cut(s)	5, 221, 258, 298, 484, 559
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	3 cut(s)	131, 188, 401
BspLI	GGNNCC	3 cut(s)	158, 159, 326
BspPI	GGATC	2 cut(s)	34, 205
BspQI	GCTCTTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	6, 216, 343
BssHII	GCGCGC	1 cut(s)	399
BssMI	GATC	3 cut(s)	12, 39, 197
BssSI	CACGAG	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	42
BstBAI	YACGTR	3 cut(s)	26, 194, 230
BstC8I	GCNNGC	2 cut(s)	145, 401
BstDEI	CTNAG	2 cut(s)	479, 528
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	19, 147, 212
BstFNI	CGCG	3 cut(s)	131, 188, 401
BstHHI	GCGC	3 cut(s)	190, 401, 403
BstKTI	GATC	3 cut(s)	15, 42, 200
BstMBI	GATC	3 cut(s)	12, 39, 197
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 304, 310
BstNSI	RCATGY	1 cut(s)	147
BstPAI	GACNNNNGTC	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	215, 216, 394
BstUI	CGCG	3 cut(s)	131, 188, 401
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	6 cut(s)	5, 221, 258, 298, 484, 559
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	19, 147, 212
Cac8I	GCNNGC	2 cut(s)	145, 401
CfoI	GCGC	3 cut(s)	190, 401, 403
Cfr13I	GGNCC	4 cut(s)	157, 219, 256, 297
Cfr9I	CCCGGG	1 cut(s)	216
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	3 cut(s)	144, 248, 344
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	479, 528
DpnI	GATC	3 cut(s)	14, 41, 199
DpnII	GATC	3 cut(s)	12, 39, 197
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	52
Eco72I	CACGTG	3 cut(s)	26, 194, 230
Eco81I	CCTNAGG	1 cut(s)	528
Eco88I	CYCGRG	2 cut(s)	216, 299
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	3 cut(s)	147, 251, 347
FaiI	YATR	8 cut(s)	75, 145, 249, 274, 345, 513, 576, 578
FaqI	GGGAC	3 cut(s)	170, 290, 378
FatI	CATG	3 cut(s)	143, 247, 343
FauI	CCCGC	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	120, 305, 404
FokI	GGATG	3 cut(s)	6, 134, 199
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	120, 305, 404
FspBI	CTAG	2 cut(s)	419, 555
GlaI	GCGC	3 cut(s)	189, 400, 402
GluI	GCNGC	3 cut(s)	120, 305, 404
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	6 cut(s)	5, 221, 258, 298, 484, 559
HapII	CCGG	4 cut(s)	151, 217, 396, 485
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	3 cut(s)	190, 401, 403
Hin1II	CATG	3 cut(s)	147, 251, 347
Hin6I	GCGC	3 cut(s)	188, 399, 401
HinP1I	GCGC	3 cut(s)	188, 399, 401
HincII	GTYRAC	2 cut(s)	71, 85
HindII	GTYRAC	2 cut(s)	71, 85
HinfI	GANTC	6 cut(s)	56, 89, 178, 330, 348, 415
HpaII	CCGG	4 cut(s)	151, 217, 396, 485
HphI	GGTGA	2 cut(s)	22, 424
Hpy166II	GTNNAC	3 cut(s)	71, 85, 571
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	2 cut(s)	334, 424
Hpy8I	GTNNAC	3 cut(s)	71, 85, 571
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	147, 171
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	3 cut(s)	25, 193, 229
HpyCH4V	TGCA	2 cut(s)	147, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 304, 310
HpyF3I	CTNAG	2 cut(s)	479, 528
HpySE526I	ACGT	3 cut(s)	25, 193, 229
Hsp92II	CATG	3 cut(s)	147, 251, 347
HspAI	GCGC	3 cut(s)	188, 399, 401
KflI	GGGWCCC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 39, 197
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	164, 230, 239, 363, 409, 445, 498
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	28, 156
MaeI	CTAG	2 cut(s)	419, 555
MaeII	ACGT	3 cut(s)	25, 193, 229
MaeIII	GTNAC	2 cut(s)	205, 412
MalI	GATC	3 cut(s)	14, 41, 199
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	3 cut(s)	12, 39, 197
MboII	GAAGA	3 cut(s)	59, 356, 500
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	4 cut(s)	187, 339, 357, 409
MnlI	CCTC	7 cut(s)	41, 175, 280, 466, 474, 499, 570
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	2 cut(s)	107, 456
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	4 cut(s)	151, 217, 396, 485
MspR9I	CCNGG	3 cut(s)	217, 218, 396
MvnI	CGCG	3 cut(s)	131, 188, 401
MwoI	GCNNNNNNNGC	3 cut(s)	128, 304, 310
NciI	CCSGG	3 cut(s)	217, 218, 396
NcoI	CCATGG	1 cut(s)	343
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	3 cut(s)	12, 39, 197
NlaIII	CATG	3 cut(s)	147, 251, 347
NlaIV	GGNNCC	3 cut(s)	158, 159, 326
NmeAIII	GCCGAG	3 cut(s)	31, 353, 418
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PalAI	GGCGCGCC	1 cut(s)	399
PauI	GCGCGC	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 60
PfeI	GAWTC	2 cut(s)	56, 89
Pfl23II	CGTACG	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	121, 306, 405
PleI	GAGTC	4 cut(s)	186, 338, 356, 409
PmaCI	CACGTG	3 cut(s)	26, 194, 230
PmlI	CACGTG	3 cut(s)	26, 194, 230
PpsI	GAGTC	4 cut(s)	186, 338, 356, 409
Ppu21I	YACGTR	3 cut(s)	26, 194, 230
PpuMI	RGGWCCY	1 cut(s)	157
PshAI	GACNNNNGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	157
PspCI	CACGTG	3 cut(s)	26, 194, 230
PspFI	CCCAGC	1 cut(s)	253
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	158, 159, 326
PspPI	GGNCC	4 cut(s)	157, 219, 256, 297
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	281
PteI	GCGCGC	1 cut(s)	399
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	107, 456
SatI	GCNGC	3 cut(s)	120, 305, 404
Sau3AI	GATC	3 cut(s)	12, 39, 197
Sau96I	GGNCC	4 cut(s)	157, 219, 256, 297
SchI	GAGTC	4 cut(s)	187, 339, 357, 409
ScrFI	CCNGG	3 cut(s)	217, 218, 396
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	28, 156
SgsI	GGCGCGCC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	157
SmaI	CCCGGG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	360
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	5 cut(s)	141, 154, 172, 304, 404
SspMI	CTAG	2 cut(s)	419, 555
SstI	GAGCTC	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	3 cut(s)	215, 216, 394
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	3 cut(s)	28, 196, 232
TaqI	TCGA	6 cut(s)	54, 92, 285, 315, 333, 351
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	360
TauI	GCSGC	2 cut(s)	307, 406
TfiI	GAWTC	2 cut(s)	56, 89
Tru1I	TTAA	2 cut(s)	107, 456
Tru9I	TTAA	2 cut(s)	107, 456
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	226, 437
TspGWI	ACGGA	2 cut(s)	23, 485
TspMI	CCCGGG	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	147
XmaI	CCCGGG	1 cut(s)	216
XspI	CTAG	2 cut(s)	419, 555
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.