Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Forward (+)

16704728 .. 16705967

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATTTACATGCCTCTCCTGTGTCTTTTATTATTGCAGCCACAATTGCTAGTATCATATACCAATTGGTGAAGCGGAGATTTGGGCCAAAAACCGAGAAGGTTTTTCCTCCCGGGCCGGCAAGATGGCCGGTGTTGGGAAACCTACTGCAGTTGGGCCCTCTACCCCACAGAGACATGGCATCTTTATGCGACAAGTATGGGCCGCTGGTCTACCTACGACTTGGGAGCATTGATGCCATCACTACCAATGACCCCGATATCATACGTGAAATACTTATTCGACAAGATGACGTCTTTGCATCACGGCCGCGAACTTTGGCCGCGGTGCATTTGGCCTATGGTTGCGGAGACGTTGCGCTTGCCCCATTAGGCCCACAATGGAAGCGAATGAGGCGAATATGCATGGAACACTTGCTAACAACAAAACGCCTCGAGTCTTTTGCCAAGCACCGAGCCGATGAAGCCCAACAACTCGTACAAGATGTTTGGGCCACGGCCCAGACGGGGAAGGCAGTGAACCTGAGGGAAGTGTTGGGTGGGTGGTCTATGAACAATGTGACTAGGATGTTGCTTGGTAAACAATATTTTGGGGCCGGGTCGGCAGGTCCACAAGAGGCCATGGAGTTCATGCACATAACCCATGAGTTATTTTGGCTGTTGGGGTTGATATATTTGGGAGATTACTTGCCAATTTGGAGGTGGGTGGATCCTTACGGTTGTGAGAAGAAAATGAGGGAAGTGGAGAAAAGGGTAGATGATTTTCATACCAAGATTCTTGAAGAGCATAGGAGGGTAAGGGAGGAGAAGAGCAAGCCAACTGGAGGAGAGGAAGATGGAGCAGAAATGGACTTTGTTGATGTTTTGTTGTCTTTGCCAGGTGAGGATGGGAAAAAGCATATGGAGGATGTGGAAATCAAAGCTCTAATACAGGTCACAGCTCACCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

316

Amino Acids

35.83

Weight (kDa)

6.84

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 310	1.1e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	313, 326
AciI	CCGC	6 cut(s)	76, 206, 311, 324, 326, 348
AclWI	GGATC	2 cut(s)	704, 717
AcoI	YGGCCR	3 cut(s)	128, 308, 321
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	3 cut(s)	137, 507, 824
AgsI	TTSAA	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	877
AluBI	AGCT	2 cut(s)	923, 941
AluI	AGCT	2 cut(s)	923, 941
Alw26I	GTCTC	2 cut(s)	168, 345
AlwI	GGATC	2 cut(s)	704, 717
Ama87I	CYCGRG	2 cut(s)	113, 434
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	361
AsuC2I	CCSGG	3 cut(s)	114, 115, 598
AsuHPI	GGTGA	3 cut(s)	82, 893, 935
AvaI	CYCGRG	2 cut(s)	113, 434
AvaII	GGWCC	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	709
BanII	GRGCYC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	4 cut(s)	120, 248, 830, 881
BceAI	ACGGC	2 cut(s)	323, 513
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	879
BcnI	CCSGG	3 cut(s)	114, 115, 598
BcoDI	GTCTC	2 cut(s)	168, 345
BfaI	CTAG	2 cut(s)	51, 564
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	596
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	4 cut(s)	39, 206, 311, 324
BlsI	GCNGC	4 cut(s)	40, 207, 312, 325
Bme1390I	CCNGG	4 cut(s)	114, 115, 598, 879
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	2 cut(s)	113, 434
BmiI	GGNNCC	3 cut(s)	159, 595, 711
BmrFI	CCNGG	4 cut(s)	114, 115, 598, 879
BmsI	GCATC	3 cut(s)	191, 226, 311
BpmI	CTGGAG	1 cut(s)	843
BpuMI	CCSGG	3 cut(s)	114, 115, 598
BsaAI	YACGTR	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	113, 324, 495, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 507, 824
Bse118I	RCCGGY	2 cut(s)	118, 130
Bse1I	ACTGG	1 cut(s)	826
Bse21I	CCTNAGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	4 cut(s)	113, 324, 495, 621
BseGI	GGATG	3 cut(s)	573, 892, 913
BseLI	CCNNNNNNNGG	3 cut(s)	137, 507, 824
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	2 cut(s)	818, 840
BseSI	GKGCMC	1 cut(s)	161
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	313, 326
Bsh1285I	CGRYCG	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	311
BsiHKCI	CYCGRG	2 cut(s)	113, 434
BsiSI	CCGG	4 cut(s)	114, 119, 131, 597
BslI	CCNNNNNNNGG	3 cut(s)	137, 507, 824
BsmAI	GTCTC	2 cut(s)	168, 345
BsmBI	CGTCTC	1 cut(s)	345
BsoBI	CYCGRG	2 cut(s)	113, 434
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	709
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	6 cut(s)	76, 206, 311, 324, 326, 348
BspCNI	CTCAG	1 cut(s)	516
BspFNI	CGCG	2 cut(s)	313, 326
BspLI	GGNNCC	3 cut(s)	159, 595, 711
BspMAI	CTGCAG	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	2 cut(s)	704, 717
BspQI	GCTCTTC	2 cut(s)	777, 803
BsrFI	RCCGGY	2 cut(s)	118, 130
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	2 cut(s)	118, 130
BssECI	CCNNGG	4 cut(s)	113, 324, 495, 621
BssMI	GATC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	2 cut(s)	777, 803
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	120, 363, 815
BstDEI	CTNAG	1 cut(s)	524
BstDSI	CCRYGG	3 cut(s)	324, 495, 621
BstF5I	GGATG	3 cut(s)	573, 892, 913
BstFNI	CGCG	2 cut(s)	313, 326
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	2 cut(s)	168, 345
BstMBI	GATC	1 cut(s)	709
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 394, 464, 602
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	4 cut(s)	112, 113, 596, 877
BstSFI	CTRYAG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	2 cut(s)	313, 326
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BstZI	CGGCCG	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	524
BtgI	CCRYGG	3 cut(s)	324, 495, 621
BtsCI	GGATG	3 cut(s)	573, 892, 913
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	120, 363, 815
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	2 cut(s)	118, 130
Cfr42I	CCGCGG	1 cut(s)	327
Cfr9I	CCCGGG	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	6 cut(s)	11, 178, 406, 622, 631, 644
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
EaeI	YGGCCR	3 cut(s)	128, 308, 321
EagI	CGGCCG	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	777, 803
EarI	CTCTTC	2 cut(s)	777, 803
EclXI	CGGCCG	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	608
Eco52I	CGGCCG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	524
Eco88I	CYCGRG	2 cut(s)	113, 434
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	877
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	6 cut(s)	14, 181, 409, 625, 634, 647
FatI	CATG	6 cut(s)	10, 177, 405, 621, 630, 643
FauNDI	CATATG	1 cut(s)	900
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	39, 206, 311, 324
FokI	GGATG	3 cut(s)	580, 899, 920
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	4 cut(s)	39, 206, 311, 324
FspBI	CTAG	2 cut(s)	51, 564
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	39, 206, 311, 324
GsuI	CTGGAG	1 cut(s)	843
HapII	CCGG	4 cut(s)	114, 119, 131, 597
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	6 cut(s)	14, 181, 409, 625, 634, 647
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	437, 775
HpaII	CCGG	4 cut(s)	114, 119, 131, 597
HphI	GGTGA	3 cut(s)	82, 893, 935
Hpy166II	GTNNAC	4 cut(s)	214, 520, 581, 611
Hpy188III	TCNNGA	1 cut(s)	779
Hpy8I	GTNNAC	4 cut(s)	214, 520, 581, 611
HpyAV	CCTTC	2 cut(s)	94, 505
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	3 cut(s)	268, 294, 354
HpyCH4V	TGCA	6 cut(s)	38, 151, 302, 331, 405, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 394, 464, 602
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	3 cut(s)	268, 294, 354
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	6 cut(s)	14, 181, 409, 625, 634, 647
HspAI	GCGC	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	709
LguI	GCTCTTC	2 cut(s)	777, 803
LmnI	GCTCC	2 cut(s)	228, 839
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	3 cut(s)	191, 226, 311
MaeI	CTAG	2 cut(s)	51, 564
MaeII	ACGT	3 cut(s)	268, 294, 354
MaeIII	GTNAC	2 cut(s)	559, 934
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	4 cut(s)	739, 794, 820, 845
MfeI	CAATTG	2 cut(s)	45, 65
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	3 cut(s)	45, 65, 693
MlyI	GAGTC	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	407
MroNI	GCCGGC	1 cut(s)	118
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	2 cut(s)	208, 326
MspI	CCGG	4 cut(s)	114, 119, 131, 597
MspR9I	CCNGG	4 cut(s)	114, 115, 598, 879
MunI	CAATTG	2 cut(s)	45, 65
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	2 cut(s)	313, 326
MwoI	GCNNNNNNNGC	4 cut(s)	47, 394, 464, 602
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	3 cut(s)	114, 115, 598
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	1 cut(s)	709
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	6 cut(s)	14, 181, 409, 625, 634, 647
NlaIV	GGNNCC	3 cut(s)	159, 595, 711
NmuCI	GTSAC	2 cut(s)	559, 934
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	777, 803
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	775
PkrI	GCNGC	4 cut(s)	40, 207, 312, 325
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Ppu21I	YACGTR	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	3 cut(s)	159, 595, 711
PspOMI	GGGCCC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	327
SapI	GCTCTTC	2 cut(s)	777, 803
SatI	GCNGC	4 cut(s)	39, 206, 311, 324
Sau3AI	GATC	1 cut(s)	709
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	4 cut(s)	114, 115, 598, 879
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	3 cut(s)	191, 226, 311
SfcI	CTRYAG	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	434
SmaI	CCCGGG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	45, 65, 693
SsiI	CCGC	6 cut(s)	76, 206, 311, 324, 326, 348
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	2 cut(s)	51, 564
StyD4I	CCNGG	4 cut(s)	112, 113, 596, 877
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	3 cut(s)	271, 297, 357
TaqI	TCGA	2 cut(s)	283, 435
TasI	AATT	3 cut(s)	45, 65, 693
TauI	GCSGC	3 cut(s)	208, 313, 326
TfiI	GAWTC	1 cut(s)	775
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	2 cut(s)	559, 934
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	559, 934
TspDTI	ATGAA	4 cut(s)	477, 566, 619, 755
TspMI	CCCGGG	1 cut(s)	113
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	608
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XhoI	CTCGAG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	51, 564
ZraI	GACGTC	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.