Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011408

Physical Location & Seq

Genomic Coordinates Reverse (-)

51660121 .. 51660699

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAGCGAATGAGGCGAATATGATGGAAAACTTGCTAACAACAAAACGCCTCGAGTCTTTTGCCAAACACCGAGCCGATGAAGCTCAACACCTCATACAAGATGTTTGGGCCACGGCACAGACAGGGAAGGTCGTGAACTTGAGGGAAGTGTTGGGTGGGTGGTCCATGAACAATGCGACTAGGATGTTGCTTGGGAAACAATATTTTGGGGCCGGGTCGGTAGGTCCACAAGAGGCCATGGAGTTCACGCACATAACCCATGATTTATTTTGGCTGTTGGGATTGATATATTTGGGAGATTACTTGCCAATTTGGAGGTGGGTGGATCCTTACGGTTGTGAGAAGAAAATGAGGGAAGTGGAGAAAAGGGTAGATGATTTTCATACCAAGATTGTTGAAGAGCATAGGAGGGTAAGGGAGGAGAAGAGCAAGCCAACTGGAGGAGAGGAAGATGGGGCAGAAATGGACTTTGTGGATATTTTGTTGTCTTTGCCAGGTGAGGATGGGAAAAAGCATATGGAGGATGTGGAAATCAAAGCTCTAATACAGCCAAACCTTTGCATAATTTCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

192

Amino Acids

22.03

Weight (kDa)

5.2

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	8 - 183	3.8e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01280
fragaria_vesca	FvH4_7g16710
malus_domestica	MD01G1082400.v1.1
prunus_persica	Prupe.2G189800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359911 RchiOBHm_Chr1g0359941 RchiOBHm_Chr1g0359971
rosa_laevigata	RLG00000027844
rosa_multiflora	Rmu_sc0008215.1_g000002
rosa_roxburghii	Rroxscaffold_4G00296660 Rroxscaffold_4G00296670 Rroxscaffold_4G00296700
rosa_rugosa	Rorug01G0273500
rosa_samantha	Rh1AG287600 Rh1AG287800 Rh1AG288000 Rh1BG253400 Rh1CG270900 Rh1DG282200
rosa_wichuraiana	Rw1G025550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	323, 336
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	86, 542
AluI	AGCT	2 cut(s)	86, 542
AlwI	GGATC	2 cut(s)	323, 336
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	111, 213, 237
AspS9I	GGNCC	4 cut(s)	111, 165, 213, 227
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	165, 227
BamHI	GGATCC	1 cut(s)	328
BccI	CCATC	3 cut(s)	19, 449, 500
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	2 cut(s)	183, 577
Bme1390I	CCNGG	2 cut(s)	217, 498
Bme18I	GGWCC	2 cut(s)	165, 227
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	4 cut(s)	111, 165, 213, 227
BmiI	GGNNCC	2 cut(s)	214, 330
BmrFI	CCNGG	2 cut(s)	217, 498
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	114, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	114, 240
BseGI	GGATG	3 cut(s)	192, 511, 532
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	437, 459
BshFI	GGCC	3 cut(s)	113, 215, 239
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	443
BsnI	GGCC	3 cut(s)	113, 215, 239
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	328, 573
Bsp19I	CCATGG	1 cut(s)	240
BspANI	GGCC	3 cut(s)	113, 215, 239
BspLI	GGNNCC	2 cut(s)	214, 330
BspPI	GGATC	2 cut(s)	323, 336
BspQI	GCTCTTC	2 cut(s)	396, 422
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	114, 240
BssMI	GATC	2 cut(s)	328, 573
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	396, 422
BstC8I	GCNNGC	1 cut(s)	434
BstDSI	CCRYGG	2 cut(s)	114, 240
BstF5I	GGATG	3 cut(s)	192, 511, 532
BstKTI	GATC	2 cut(s)	331, 576
BstMBI	GATC	2 cut(s)	328, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 83
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	215, 496
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	113, 215, 239
BtgI	CCRYGG	2 cut(s)	114, 240
BtsCI	GGATG	3 cut(s)	192, 511, 532
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	4 cut(s)	111, 165, 213, 227
CviAII	CATG	3 cut(s)	169, 241, 263
CviJI	RGCY	9 cut(s)	77, 86, 113, 215, 239, 277, 436, 542, 553
CviKI_1	RGCY	9 cut(s)	77, 86, 113, 215, 239, 277, 436, 542, 553
DpnI	GATC	2 cut(s)	330, 575
DpnII	GATC	2 cut(s)	328, 573
Eam1104I	CTCTTC	2 cut(s)	396, 422
EarI	CTCTTC	2 cut(s)	396, 422
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	165, 227
Eco88I	CYCGRG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	172, 244, 266
FatI	CATG	3 cut(s)	168, 240, 262
FauNDI	CATATG	1 cut(s)	519
FokI	GGATG	3 cut(s)	199, 518, 539
FspBI	CTAG	2 cut(s)	183, 577
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	113, 215, 239
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	3 cut(s)	172, 244, 266
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	3 cut(s)	139, 230, 249
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	139, 230, 249
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	1 cut(s)	564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 83
Hsp92II	CATG	3 cut(s)	172, 244, 266
Kzo9I	GATC	2 cut(s)	328, 573
LguI	GCTCTTC	2 cut(s)	396, 422
LpnPI	CCDG	5 cut(s)	111, 229, 426, 483, 510
MaeI	CTAG	2 cut(s)	183, 577
MalI	GATC	2 cut(s)	330, 575
MboI	GATC	2 cut(s)	328, 573
MboII	GAAGA	4 cut(s)	358, 413, 439, 464
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	2 cut(s)	312, 567
MlyI	GAGTC	1 cut(s)	65
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	217, 498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	14, 83
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	2 cut(s)	328, 573
NlaIII	CATG	3 cut(s)	172, 244, 266
NlaIV	GGNNCC	2 cut(s)	214, 330
PaeR7I	CTCGAG	1 cut(s)	53
PciSI	GCTCTTC	2 cut(s)	396, 422
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	214, 330
PspPI	GGNCC	4 cut(s)	111, 165, 213, 227
PspXI	VCTCGAGB	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	328
SapI	GCTCTTC	2 cut(s)	396, 422
Sau3AI	GATC	2 cut(s)	328, 573
Sau96I	GGNCC	4 cut(s)	111, 165, 213, 227
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	217, 498
SetI	ASST	8 cut(s)	88, 96, 135, 229, 323, 502, 544, 561
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	165, 227
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	53, 142
SmoI	CTYRAG	2 cut(s)	53, 142
Sse9I	AATT	2 cut(s)	312, 567
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	2 cut(s)	183, 577
StyD4I	CCNGG	2 cut(s)	215, 496
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	54, 572
TasI	AATT	2 cut(s)	312, 567
TspDTI	ATGAA	3 cut(s)	96, 185, 374
VpaK11BI	GGWCC	2 cut(s)	165, 227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	53
XspI	CTAG	2 cut(s)	183, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.