RchiOBHm_Chr1g0362991

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017512
Physical Location & Seq
Forward (+)
54531593 .. 54532030
438 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGTTGATGATGTTGATCATGAAGAGCAAGTTTTTCAAAGAATGCTTTGGTAGGTGCAGAAAAGCTGGTGCTAGAGCACTAGAGTCTGTATCTTGGGATCATGTTTTCAATAGAGATATTAAGTGGTTCTGTTTGCATTCTGAAGAGGACAATTATAATATCCCCAAAGATGTCCCAAAAGGTCACCTAGTGGTCTATGTTGGTGAAGAATGCAGGAGATTTGTGATCAAGATTACCTTACTCAGCCATCCTTTGTTCCAGGCATTGCTGGATCAGGCTGAGGAAGTGTTTCAGTTTGCCACCAACTCATCAAAACTCCGCATTCCTTGCAGCGAGTACTTGTTCCTCAGCGTTCTTCAGTGCATTAGCTCTGAACTCCTAGATCAAAGGTGTTCGTTCTCTATGAGACGCTTTCAGAGAGATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

143

Amino Acids

16.88

Weight (kDa)

8.71

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 47 - 122 6.7e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 105, 279
AcuI CTGAAG 2 cut(s) 162, 341
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 2 cut(s) 37, 109
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 65, 369
AluI AGCT 2 cut(s) 65, 369
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 2 cut(s) 105, 279
ApeKI GCWGC 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 176, 215
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 2 cut(s) 279, 347
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 2 cut(s) 15, 225
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 4 cut(s) 72, 80, 188, 380
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
Bpu10I CCTNAGC 2 cut(s) 279, 347
BsaBI GATNNNNATC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 14
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 3 cut(s) 256, 270, 361
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 4 cut(s) 47, 136, 215, 321
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 5 cut(s) 15, 97, 225, 271, 382
BspACI CCGC 1 cut(s) 319
BspCNI CTCAG 3 cut(s) 255, 271, 360
BspHI TCATGA 1 cut(s) 18
BspPI GGATC 2 cut(s) 105, 279
BspQI GCTCTTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 263
BssMI GATC 5 cut(s) 15, 97, 225, 271, 382
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 17, 138
BstAPI GCANNNNNTGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 242, 279, 347
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 5 cut(s) 18, 100, 228, 274, 385
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 5 cut(s) 15, 97, 225, 271, 382
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 18
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 19, 101
CviJI RGCY 4 cut(s) 65, 246, 278, 369
CviKI_1 RGCY 4 cut(s) 65, 246, 278, 369
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 242, 279, 347
DpnI GATC 5 cut(s) 17, 99, 227, 273, 384
DpnII GATC 5 cut(s) 15, 97, 225, 271, 382
DraIII CACNNNGTG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 17, 138
EarI CTCTTC 2 cut(s) 17, 138
Eco57I CTGAAG 2 cut(s) 162, 341
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 2 cut(s) 22, 104
FaiI YATR 6 cut(s) 20, 102, 156, 198, 404, 430
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 18, 100
FbaI TGATCA 2 cut(s) 15, 225
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 4 cut(s) 72, 80, 188, 380
GluI GCNGC 1 cut(s) 331
HgaI GACGC 1 cut(s) 417
Hin1II CATG 2 cut(s) 22, 104
HinfI GANTC 1 cut(s) 83
HphI GGTGA 2 cut(s) 176, 215
Hpy188I TCNGA 3 cut(s) 142, 373, 417
Hpy188III TCNNGA 2 cut(s) 19, 229
HpyCH4V TGCA 5 cut(s) 57, 136, 213, 330, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 3 cut(s) 242, 279, 347
Hsp92II CATG 2 cut(s) 22, 104
Ksp22I TGATCA 2 cut(s) 15, 225
Kzo9I GATC 5 cut(s) 15, 97, 225, 271, 382
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 6 cut(s) 51, 199, 245, 254, 260, 272
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 4 cut(s) 72, 80, 188, 380
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 17, 99, 227, 273, 384
MboI GATC 5 cut(s) 15, 97, 225, 271, 382
MboII GAAGA 4 cut(s) 34, 155, 218, 347
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 3 cut(s) 139, 274, 356
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 4 cut(s) 47, 136, 215, 321
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 5 cut(s) 15, 97, 225, 271, 382
NlaIII CATG 2 cut(s) 22, 104
NmuCI GTSAC 1 cut(s) 182
PagI TCATGA 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 4 cut(s) 47, 136, 215, 321
PdmI GAANNNNTTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 258
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 5 cut(s) 15, 97, 225, 271, 382
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 56, 67, 184, 189, 239, 371, 392
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 319
SspMI CTAG 4 cut(s) 72, 80, 188, 380
StyD4I CCNGG 1 cut(s) 258
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 4 cut(s) 72, 80, 188, 380
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.