RchiOBHm_Chr1g0365431

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014133
Physical Location & Seq
Forward (+)
56311948 .. 56314667
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGCTCTTGAGGTTGCTGCCAAGGCTGCTGCTGGTGCCCCTGACATTCTTGGGGACTGTCCTTTCACCCATAGGGTTCTTCTCACTTTGGAGGAGAAGAAAGTACCTTACAAGCTCCACCTCATAAACTTGGCTGACAAGCCCCAATGGTTTACAGAAGTGAATCCAGAGGGAAAGGTGCCTGTGGTGAAGTTCGATGACAAATGGGTCTCTGATTCTGATGTGCTTGCTGGGATTCTTGAGGAAAAGTACCCTGAACCTGTTCTCAAAACTCCTCCTGAATTTGCTTCAGTGGGATCAAAGATTTTTGGGTCATTTGTGACATTCCTCAAGAGCAAGGATCCCAGCGACGGTTCAGAACAGGCTTTGCTTAATGAACTGAAGGCATTGGATGAGCATCTTAAGGCACATGGTCCATACATTGCTGGGGAGAAGGTCACTGCTGCTGATCTAAGCTTGGCACCAAAACTGTACCATCTCAAGGTGGCTCTTGGCCATTTCAAGAAGTGGACTGTCCCTGAAAGCTTGACCCATTACCACAAGTACACTGAGTTGTTGTTCTCAAGGGAATCTTTTGTAAAGACCATCGCTGAAGAGAAACATATTATTGCAGGATGGGAGCCGAAAGTCAACCCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006082 GO:0006464 GO:0006518 GO:0006575 GO:0006732 GO:0006749 GO:0006766 GO:0006767 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010193 GO:0010646 GO:0010647 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016020 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0016999 GO:0017001 GO:0017144 GO:0019538 GO:0019752 GO:0019852 GO:0023051 GO:0023056 GO:0033218 GO:0033355 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0036211 GO:0042221 GO:0042277 GO:0042493 GO:0042542 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043412 GO:0043436 GO:0043603 GO:0043900 GO:0043903 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0046677 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0072341 GO:0072593 GO:0080151 GO:0097237 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1901701 GO:1990748 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 ko01100 map00053 map00480 map01100
Pfam Domains
Protein Families
GST_C_2 GST_N_3

Protein Analysis

213

Amino Acids

23.71

Weight (kDa)

6.31

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLIC-like_N PF22441 4 - 84 3.9e-07 CLIC-like N-terminal domain
GST_N_3 PF13417 19 - 87 4.3e-16 Glutathione S-transferase, N-terminal domain
GST_N PF02798 19 - 74 2.9e-07 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 20 - 82 4e-18 Glutathione S-transferase, N-terminal domain
GST_C_2 PF13410 120 - 177 3.9e-08 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19550 AT1G19570 AT1G75270
fragaria_vesca FvH4_7g19940
malus_domestica MD01G1120300.v1.1 MD07G1189500.v1.1
prunus_persica Prupe.2G227100_v2.0.a1
pyrus_communis pycom01g14680
rosa_chinensis RchiOBHm_Chr1g0365431
rosa_laevigata RLG00000027422
rosa_multiflora Rmu_sc0002587.1_g000002
rosa_roxburghii Rroxscaffold_4G00291240
rosa_rugosa Rorug01G0322100
rosa_samantha Rh1BG292300 Rh1CG308800 Rh1DG323900
rosa_wichuraiana Rw1G029330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB1I GGYRCC 3 cut(s) 35, 178, 460
AclWI GGATC 3 cut(s) 304, 335, 348
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 3 cut(s) 273, 401, 612
AfaI GTAC 4 cut(s) 105, 251, 473, 545
AfiI CCNNNNNNNGG 2 cut(s) 350, 481
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 502
AluBI AGCT 3 cut(s) 115, 456, 525
AluI AGCT 3 cut(s) 115, 456, 525
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 3 cut(s) 304, 335, 348
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 4 cut(s) 17, 26, 29, 443
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 58, 199
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 495
BamHI GGATCC 1 cut(s) 340
BanI GGYRCC 3 cut(s) 35, 178, 460
BbvI GCAGC 4 cut(s) 4, 13, 16, 430
BccI CCATC 3 cut(s) 483, 593, 609
BcoDI GTCTC 1 cut(s) 214
BfrI CTTAAG 1 cut(s) 401
BisI GCNGC 4 cut(s) 18, 27, 30, 444
BlsI GCNGC 4 cut(s) 19, 28, 31, 445
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 5 cut(s) 37, 180, 342, 462, 621
BmsI GCATC 1 cut(s) 406
BpuEI CTTGAG 5 cut(s) 29, 260, 314, 464, 547
BsaBI GATNNNNATC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 481
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 397, 620
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 350, 481
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 540
BseRI GAGGAG 2 cut(s) 107, 264
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 4 cut(s) 4, 13, 16, 430
BseYI CCCAGC 3 cut(s) 230, 344, 425
BshFI GGCC 1 cut(s) 495
BshNI GGYRCC 3 cut(s) 35, 178, 460
BslFI GGGAC 2 cut(s) 68, 500
BslI CCNNNNNNNGG 2 cut(s) 350, 481
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 68, 500
BsnI GGCC 1 cut(s) 495
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 296, 340, 448
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 5 cut(s) 37, 180, 342, 462, 621
BspPI GGATC 3 cut(s) 304, 335, 348
BspT107I GGYRCC 3 cut(s) 35, 178, 460
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 296, 340, 448
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 4 cut(s) 59, 353, 471, 514
Bst6I CTCTTC 1 cut(s) 588
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 452, 549
BstF5I GGATG 2 cut(s) 397, 620
BstKTI GATC 3 cut(s) 299, 343, 451
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 296, 340, 448
BstMWI GCNNNNNNNGC 3 cut(s) 23, 26, 35
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 4, 13, 16, 430
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 397, 620
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 297, 438, 546
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 4 cut(s) 104, 250, 472, 544
CviAII CATG 1 cut(s) 410
CviQI GTAC 4 cut(s) 104, 250, 472, 544
DdeI CTNAG 2 cut(s) 452, 549
DpnI GATC 3 cut(s) 298, 342, 450
DpnII GATC 3 cut(s) 296, 340, 448
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 3 cut(s) 273, 401, 612
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 413
FaiI YATR 5 cut(s) 72, 125, 411, 418, 603
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 2 cut(s) 68, 500
FatI CATG 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 18, 27, 30, 444
FokI GGATG 2 cut(s) 404, 627
Fsp4HI GCNGC 4 cut(s) 18, 27, 30, 444
GluI GCNGC 4 cut(s) 18, 27, 30, 444
GsaI CCCAGC 3 cut(s) 234, 348, 429
HaeIII GGCC 1 cut(s) 495
Hin1II CATG 1 cut(s) 413
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 2 cut(s) 454, 523
HinfI GANTC 4 cut(s) 163, 215, 235, 569
HphI GGTGA 2 cut(s) 58, 199
Hpy166II GTNNAC 4 cut(s) 153, 510, 546, 631
Hpy188I TCNGA 3 cut(s) 214, 220, 358
Hpy188III TCNNGA 6 cut(s) 8, 167, 239, 278, 331, 502
Hpy8I GTNNAC 4 cut(s) 153, 510, 546, 631
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 2 cut(s) 376, 427
HpyCH4III ACNGT 4 cut(s) 59, 353, 471, 514
HpyCH4V TGCA 1 cut(s) 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 26, 35
HpyF3I CTNAG 2 cut(s) 452, 549
Hsp92II CATG 1 cut(s) 413
Kzo9I GATC 3 cut(s) 296, 340, 448
LmnI GCTCC 2 cut(s) 120, 619
Lsp1109I GCAGC 4 cut(s) 4, 13, 16, 430
LweI GCATC 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 319, 436
MalI GATC 3 cut(s) 298, 342, 450
MboI GATC 3 cut(s) 296, 340, 448
MboII GAAGA 3 cut(s) 71, 109, 605
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 495
MnlI CCTC 7 cut(s) 4, 85, 131, 163, 235, 285, 338
Mox20I TGGCCA 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 495
MseI TTAA 2 cut(s) 372, 402
Msp20I TGGCCA 1 cut(s) 495
MspCI CTTAAG 1 cut(s) 401
MwoI GCNNNNNNNGC 3 cut(s) 23, 26, 35
NdeII GATC 3 cut(s) 296, 340, 448
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 5 cut(s) 37, 180, 342, 462, 621
NmuCI GTSAC 2 cut(s) 319, 436
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 4 cut(s) 163, 215, 235, 569
PkrI GCNGC 4 cut(s) 19, 28, 31, 445
PspFI CCCAGC 3 cut(s) 230, 344, 425
PspN4I GGNNCC 5 cut(s) 37, 180, 342, 462, 621
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 4 cut(s) 105, 251, 473, 545
RsaNI GTAC 4 cut(s) 104, 250, 472, 544
SaqAI TTAA 2 cut(s) 372, 402
SatI GCNGC 4 cut(s) 18, 27, 30, 444
Sau3AI GATC 3 cut(s) 296, 340, 448
Sau96I GGNCC 1 cut(s) 413
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 413
SmlI CTYRAG 6 cut(s) 8, 239, 329, 401, 479, 562
SmoI CTYRAG 6 cut(s) 8, 239, 329, 401, 479, 562
Sse9I AATT 1 cut(s) 281
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 4 cut(s) 59, 353, 471, 514
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 281
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 4 cut(s) 163, 215, 235, 569
Tru1I TTAA 2 cut(s) 372, 402
Tru9I TTAA 2 cut(s) 372, 402
TscAI CASTG 3 cut(s) 297, 445, 553
TseFI GTSAC 2 cut(s) 319, 436
TseI GCWGC 4 cut(s) 17, 26, 29, 443
Tsp45I GTSAC 2 cut(s) 319, 436
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 3 cut(s) 297, 445, 553
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.