RchiOBHm_Chr1g0375051

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015385
Physical Location & Seq
Reverse (-)
62635993 .. 62636998
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGCTAGCTTCTATGTCTATTCTATTCTCAAGTAAGAAGCTAAAGATTGAGTTTGAAAGAAAAAAGAGAACTACCTACATTCACAGAGAGAGAAGAACAAACATGGCTTGCTGGTCTGCTGAGAATGCCACAAAAGCCTACCTCAAATCCTTGAAACTGGGCCAAAAAGCAAATGAGCCAGACGTGGTTGAGTTCGTTTCAGCACTAGCCGCAGGCAACAATGCACAGCTAATGGTTGTGGCGTGTTCCGGTGCAGCTGACTATACCACACTAGCCCTGGTTGCGGCAGCACAGCAAACCGGAGGGCGTGTGGTGTGCATTCTCCCTGGCAATGAAGAACTGCGTATGTCTGAGAAAGTCCTTGGCATTAAAAATGTGCGTCACATTGATTTTGTGATTGGGGAGGCCCAAAGTCTTGTGTTGAACTATTGCAAGGAGGCTGATTTTGTGCTGATTGATTGTAACCTTGAGAACCATGAGGGGATTCTTAGGACGGTGCAAATGGGGAAGAAGCAAAATGGGGCAGTTGTTGTGGGGACTAATGCCTTTTGCAAAGAGTCGTGGAGGTCCGGTGGGGCGAGGACTCAGTTGTTGCCTATAGGAGGAGGATTGTTAGTGACAAGAATCGCTGCTATTGGTGGTTGTGGTACTATTGAGAGGAGGAAGTCCCAATGGGTTTCGAAAGTTGACAAATGCACAGGTGAAGAGCATGTTTTCAGGGTCAGGTTTCCACGAGGGAAAGGGATTCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

251

Amino Acids

27.46

Weight (kDa)

9.53

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 37 - 240 1.8e-30 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 210, 284
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 283, 602
AgsI TTSAA 4 cut(s) 56, 154, 424, 749
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 2 cut(s) 276, 325
AluBI AGCT 4 cut(s) 8, 40, 229, 257
AluI AGCT 4 cut(s) 8, 40, 229, 257
AoxI GGCC 2 cut(s) 160, 405
ApeKI GCWGC 3 cut(s) 254, 287, 629
AspS9I GGNCC 3 cut(s) 160, 406, 567
AsuHPI GGTGA 1 cut(s) 713
AsuII TTCGAA 1 cut(s) 680
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 567
BauI CACGAG 1 cut(s) 732
BbvI GCAGC 3 cut(s) 266, 299, 616
BciT130I CCWGG 2 cut(s) 278, 327
BfaI CTAG 3 cut(s) 5, 206, 272
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 5 cut(s) 210, 255, 285, 288, 630
BlsI GCNGC 5 cut(s) 211, 256, 286, 289, 631
Bme1390I CCNGG 2 cut(s) 278, 327
Bme18I GGWCC 1 cut(s) 567
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 160, 406, 567
BmrFI CCNGG 2 cut(s) 278, 327
BmrI ACTGGG 1 cut(s) 167
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 680
BpuEI CTTGAG 2 cut(s) 13, 488
BsaJI CCNNGG 3 cut(s) 276, 325, 361
BsaWI WCCGGW 3 cut(s) 248, 299, 569
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 556, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 602
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 2 cut(s) 278, 327
BseDI CCNNGG 3 cut(s) 276, 325, 361
BseLI CCNNNNNNNGG 2 cut(s) 283, 602
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 111, 342, 599
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 618, 673
BseXI GCAGC 3 cut(s) 266, 299, 616
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 162, 407
BsiSI CCGG 3 cut(s) 249, 300, 570
BslFI GGGAC 2 cut(s) 550, 652
BslI CCNNNNNNNGG 2 cut(s) 283, 602
BsmFI GGGAC 2 cut(s) 550, 652
BsmI GAATGC 2 cut(s) 130, 318
BsnI GGCC 2 cut(s) 162, 407
Bsp119I TTCGAA 1 cut(s) 680
BspACI CCGC 2 cut(s) 210, 284
BspANI GGCC 2 cut(s) 162, 407
BspCNI CTCAG 3 cut(s) 112, 343, 598
BspOI GCTAGC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 699
BspT104I TTCGAA 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 276, 325, 361
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 278, 327
Bst4CI ACNGT 1 cut(s) 496
Bst6I CTCTTC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 6, 109, 214
BstDEI CTNAG 4 cut(s) 120, 351, 488, 585
BstENI CCTNNNNNAGG 1 cut(s) 600
BstMWI GCNNNNNNNGC 4 cut(s) 125, 134, 209, 281
BstNI CCWGG 2 cut(s) 278, 327
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 276, 325
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 3 cut(s) 266, 299, 616
BsuRI GGCC 2 cut(s) 162, 407
BtrI CACGTC 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 6, 109, 214
Cfr13I GGNCC 3 cut(s) 160, 406, 567
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 648
CviAII CATG 3 cut(s) 103, 476, 710
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 4 cut(s) 120, 351, 488, 585
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoRII CCWGG 2 cut(s) 276, 325
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 106, 479, 713
FaiI YATR 8 cut(s) 14, 104, 264, 347, 477, 599, 711, 754
FaqI GGGAC 2 cut(s) 550, 652
FatI CATG 3 cut(s) 102, 475, 709
Fnu4HI GCNGC 5 cut(s) 210, 255, 285, 288, 630
Fsp4HI GCNGC 5 cut(s) 210, 255, 285, 288, 630
FspBI CTAG 3 cut(s) 5, 206, 272
GluI GCNGC 5 cut(s) 210, 255, 285, 288, 630
HaeIII GGCC 2 cut(s) 162, 407
HapII CCGG 3 cut(s) 249, 300, 570
HgaI GACGC 1 cut(s) 368
Hin1II CATG 3 cut(s) 106, 479, 713
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 484, 557, 583, 624, 745
HpaII CCGG 3 cut(s) 249, 300, 570
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 688
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 7 cut(s) 224, 254, 318, 432, 499, 552, 696
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 134, 209, 281
HpyF3I CTNAG 4 cut(s) 120, 351, 488, 585
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 3 cut(s) 106, 479, 713
LguI GCTCTTC 1 cut(s) 699
Lsp1109I GCAGC 3 cut(s) 266, 299, 616
MaeI CTAG 3 cut(s) 5, 206, 272
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 380, 461, 616
MboII GAAGA 4 cut(s) 105, 347, 520, 716
MlyI GAGTC 2 cut(s) 566, 577
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 3 cut(s) 249, 300, 570
MspR9I CCNGG 2 cut(s) 278, 327
Mva1269I GAATGC 2 cut(s) 130, 318
MvaI CCWGG 2 cut(s) 278, 327
MwoI GCNNNNNNNGC 4 cut(s) 125, 134, 209, 281
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 3 cut(s) 106, 479, 713
NmuCI GTSAC 2 cut(s) 380, 616
NspI RCATGY 1 cut(s) 713
NspV TTCGAA 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 699
PctI GAATGC 2 cut(s) 130, 318
PfeI GAWTC 3 cut(s) 484, 624, 745
PkrI GCNGC 5 cut(s) 211, 256, 286, 289, 631
PleI GAGTC 2 cut(s) 565, 577
PpsI GAGTC 2 cut(s) 565, 577
Psp6I CCWGG 2 cut(s) 276, 325
PspGI CCWGG 2 cut(s) 276, 325
PspPI GGNCC 3 cut(s) 160, 406, 567
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 5 cut(s) 210, 255, 285, 288, 630
Sau96I GGNCC 3 cut(s) 160, 406, 567
SchI GAGTC 2 cut(s) 566, 577
ScrFI CCNGG 2 cut(s) 278, 327
SfcI CTRYAG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 680
SinI GGWCC 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 28, 467
SmoI CTYRAG 2 cut(s) 28, 467
SsiI CCGC 2 cut(s) 210, 284
SspMI CTAG 3 cut(s) 5, 206, 272
StyD4I CCNGG 2 cut(s) 276, 325
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 680
TauI GCSGC 2 cut(s) 212, 287
TfiI GAWTC 3 cut(s) 484, 624, 745
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 2 cut(s) 380, 616
TseI GCWGC 3 cut(s) 254, 287, 629
Tsp45I GTSAC 2 cut(s) 380, 616
TspDTI ATGAA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 600
XceI RCATGY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 3 cut(s) 5, 206, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.