RchiOBHm_Chr1g0375221

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016559
Physical Location & Seq
Forward (+)
62723984 .. 62725255
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGGCAACCTTCAACAAGAAGCAGGTAAGGGTACCACCTTCAGTACCATTTCTTTGGGAAGAAATGCCAGGAATACCAAAAAAAGACTGGAAACCAACTGTTTCTTCAAACAGTGCAGCTCCAACCCCTCCAGTCAAGCTTATTGCATCGGTCCCGTTCATATGGGAAGAAAAGCCAGGAACGCCACTACCGTATTTCGCGGAATCGTCATCAGAATCAGCAATGCCTAAACCCATGATGCTCATCACTTACCCATCACCTCCAATATGCTCCCAGCACAATGATCATGGCGCTGAAGATTACAGTGATGGCAGTAATGAAAATGATGATGGAGAAGATGATATACAAAGTGTGTTCAAACTGGACATGGAAGCATTTGATTTTGAAACAGATGATTCATTTAGCTCGGCTCCTTCTCTCCTAGCAAACTGTCTTGTTTCATCATTGGCAATTTCCACTGCTGTTCCAGCGCCAGAAGATAAGAGTGATCAGACAGAGACAGACACACCTTCCTCACCATTGTCAGAAGCAGGCAGCAGTACAAGCAGTTATGCAACTGGAGCTTCGAGCCTGGTGGGTGGTGCTTTTTTGGAATGCCTTTTTCCACTGCTTCCTGCCAAAGCTGGATTTCTTGAAAAGGTTGGCCAATCAGACAACCACACAACTCCACAAGGATCAAAGACTAAATACTTTGATCGTGAATTTAATGGTAGCGTCATTCTGAGGCCAAGAACACTCGGAGAGCTGATACTGATGAGCCGAAAGAGTAGTTACAGGAGGAAAGCTGTTCAAATGAGGAAACAGAATCTATCAAAGGTAAACTCCATCCTTGCATCTACTTTTTCACCTTCTTTGTTTCCTCAACATATATTTAGTTGCCAAGCTACTACAGCAGTACATGAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

302

Amino Acids

32.81

Weight (kDa)

5.04

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51680
fragaria_vesca FvH4_7g28270
prunus_persica Prupe.2G283000_v2.0.a1
pyrus_communis pycom01g19790
rosa_chinensis RchiOBHm_Chr1g0375221
rosa_laevigata RLG00000026678
rosa_multiflora Rmu_sc0000554.1_g000028
rosa_roxburghii Rroxscaffold_4G00282930
rosa_rugosa Rorug01G0389300
rosa_samantha Rh1AG400000 Rh1BG364600 Rh1CG377600 Rh1DG395200
rosa_wichuraiana Rw1G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 200
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 2 cut(s) 24, 315
AfaI GTAC 4 cut(s) 33, 45, 541, 897
AgsI TTSAA 6 cut(s) 13, 108, 358, 386, 635, 791
AjnI CCWGG 3 cut(s) 67, 175, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 8 cut(s) 119, 139, 405, 563, 623, 745, 785, 884
AluI AGCT 8 cut(s) 119, 139, 405, 563, 623, 745, 785, 884
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 682
AoxI GGCC 2 cut(s) 643, 725
ApeKI GCWGC 2 cut(s) 116, 534
ApoI RAATTY 1 cut(s) 701
Asp718I GGTACC 1 cut(s) 31
AspLEI GCGC 2 cut(s) 293, 472
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 249, 507, 837
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 31
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BbvI GCAGC 2 cut(s) 128, 546
BccI CCATC 4 cut(s) 262, 302, 323, 833
BciT130I CCWGG 3 cut(s) 69, 177, 572
BclI TGATCA 2 cut(s) 283, 487
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 422, 907
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 2 cut(s) 294, 473
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 2 cut(s) 117, 535
BlsI GCNGC 2 cut(s) 118, 536
Bme1390I CCNGG 3 cut(s) 69, 177, 572
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 33, 153, 411
BmrFI CCNGG 3 cut(s) 69, 177, 572
BmsI GCATC 3 cut(s) 155, 228, 842
BpmI CTGGAG 2 cut(s) 114, 579
BsaBI GATNNNNATC 1 cut(s) 242
Bse1I ACTGG 4 cut(s) 92, 131, 366, 562
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 3 cut(s) 69, 177, 572
BseGI GGATG 1 cut(s) 825
BseJI GATNNNNATC 1 cut(s) 242
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 713
BseNI ACTGG 4 cut(s) 92, 131, 366, 562
BseXI GCAGC 2 cut(s) 128, 546
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 645, 727
BshNI GGYRCC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 2 cut(s) 645, 727
Bsp143I GATC 4 cut(s) 283, 487, 674, 694
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 645, 727
BspCNI CTCAG 1 cut(s) 714
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 3 cut(s) 33, 153, 411
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 4 cut(s) 92, 131, 366, 562
BssMI GATC 4 cut(s) 283, 487, 674, 694
Bst2UI CCWGG 3 cut(s) 69, 177, 572
Bst4CI ACNGT 5 cut(s) 100, 113, 192, 305, 431
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 722
BstF5I GGATG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 2 cut(s) 294, 473
BstHHI GCGC 2 cut(s) 293, 472
BstKTI GATC 4 cut(s) 286, 490, 677, 697
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 283, 487, 674, 694
BstMWI GCNNNNNNNGC 5 cut(s) 181, 467, 543, 560, 890
BstNI CCWGG 3 cut(s) 69, 177, 572
BstSCI CCNGG 3 cut(s) 67, 175, 570
BstSFI CTRYAG 1 cut(s) 888
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 128, 546
BstXI CCANNNNNNTGG 1 cut(s) 54
BsuRI GGCC 2 cut(s) 645, 727
BtsCI GGATG 1 cut(s) 825
BtsI GCAGTG 2 cut(s) 456, 605
BtsIMutI CAGTG 4 cut(s) 118, 310, 456, 605
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 532
CfoI GCGC 2 cut(s) 293, 472
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 703
Csp6I GTAC 4 cut(s) 32, 44, 540, 896
CviAII CATG 4 cut(s) 235, 287, 367, 899
CviQI GTAC 4 cut(s) 32, 44, 540, 896
DdeI CTNAG 1 cut(s) 722
DpnI GATC 4 cut(s) 285, 489, 676, 696
DpnII GATC 4 cut(s) 283, 487, 674, 694
EaeI YGGCCR 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 24, 315
EcoRII CCWGG 3 cut(s) 67, 175, 570
FaeI CATG 4 cut(s) 238, 290, 370, 902
FaqI GGGAC 1 cut(s) 137
FatI CATG 4 cut(s) 234, 286, 366, 898
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 2 cut(s) 283, 487
Fnu4HI GCNGC 2 cut(s) 117, 535
FokI GGATG 1 cut(s) 812
Fsp4HI GCNGC 2 cut(s) 117, 535
FspBI CTAG 2 cut(s) 422, 907
GlaI GCGC 2 cut(s) 292, 471
GluI GCNGC 2 cut(s) 117, 535
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 2 cut(s) 114, 579
HaeII RGCGCY 2 cut(s) 294, 473
HaeIII GGCC 2 cut(s) 645, 727
HgaI GACGC 1 cut(s) 703
HhaI GCGC 2 cut(s) 293, 472
Hin1II CATG 4 cut(s) 238, 290, 370, 902
Hin6I GCGC 2 cut(s) 291, 470
HinP1I GCGC 2 cut(s) 291, 470
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 203, 215, 395, 805
HphI GGTGA 3 cut(s) 249, 507, 837
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 6 cut(s) 214, 492, 526, 652, 723, 740
Hpy188III TCNNGA 2 cut(s) 632, 698
Hpy8I GTNNAC 1 cut(s) 820
HpyAV CCTTC 5 cut(s) 19, 48, 423, 519, 858
HpyCH4III ACNGT 5 cut(s) 100, 113, 192, 305, 431
HpyCH4V TGCA 4 cut(s) 116, 146, 554, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 467, 543, 560, 890
HpyF3I CTNAG 1 cut(s) 722
Hsp92II CATG 4 cut(s) 238, 290, 370, 902
HspAI GCGC 2 cut(s) 291, 470
KpnI GGTACC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 283, 487
Kzo9I GATC 4 cut(s) 283, 487, 674, 694
LmnI GCTCC 4 cut(s) 124, 275, 415, 560
Lsp1109I GCAGC 2 cut(s) 128, 546
LweI GCATC 3 cut(s) 155, 228, 842
MaeI CTAG 2 cut(s) 422, 907
MaeIII GTNAC 1 cut(s) 770
MalI GATC 4 cut(s) 285, 489, 676, 696
MboI GATC 4 cut(s) 283, 487, 674, 694
MboII GAAGA 6 cut(s) 71, 96, 179, 308, 347, 488
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 2 cut(s) 450, 701
MluNI TGGCCA 1 cut(s) 645
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 138, 270, 523, 717, 771, 789, 870
Mox20I TGGCCA 1 cut(s) 645
MscI TGGCCA 1 cut(s) 645
MseI TTAA 1 cut(s) 705
Msp20I TGGCCA 1 cut(s) 645
MspR9I CCNGG 3 cut(s) 69, 177, 572
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 3 cut(s) 69, 177, 572
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 181, 467, 543, 560, 890
NdeI CATATG 1 cut(s) 161
NdeII GATC 4 cut(s) 283, 487, 674, 694
NlaIII CATG 4 cut(s) 238, 290, 370, 902
NlaIV GGNNCC 3 cut(s) 33, 153, 411
NmeAIII GCCGAG 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 4 cut(s) 203, 215, 395, 805
PkrI GCNGC 2 cut(s) 118, 536
Psp6I CCWGG 3 cut(s) 67, 175, 570
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 3 cut(s) 67, 175, 570
PspN4I GGNNCC 3 cut(s) 33, 153, 411
PspPI GGNCC 1 cut(s) 151
RsaI GTAC 4 cut(s) 33, 45, 541, 897
RsaNI GTAC 4 cut(s) 32, 44, 540, 896
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 2 cut(s) 117, 535
Sau3AI GATC 4 cut(s) 283, 487, 674, 694
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 3 cut(s) 69, 177, 572
SfaNI GCATC 3 cut(s) 155, 228, 842
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 151
Sse9I AATT 2 cut(s) 450, 701
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 422, 907
StyD4I CCNGG 3 cut(s) 67, 175, 570
TaaI ACNGT 5 cut(s) 100, 113, 192, 305, 431
TaqI TCGA 1 cut(s) 566
TaqII GACCGA 1 cut(s) 139
TasI AATT 2 cut(s) 450, 701
TatI WGTACW 2 cut(s) 539, 895
TfiI GAWTC 4 cut(s) 203, 215, 395, 805
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 4 cut(s) 118, 310, 463, 612
TseI GCWGC 2 cut(s) 116, 534
TspDTI ATGAA 4 cut(s) 148, 333, 387, 429
TspRI CASTG 4 cut(s) 118, 310, 463, 612
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XspI CTAG 2 cut(s) 422, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.